Clone BS08149 Report

Search the DGRC for BS08149

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:81
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG7275-RA
Protein status:BS08149.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08149.3prime Sequence

886 bp (789 high quality bases) assembled on 2006-01-06

> BS08149.3prime
ATGGTCTAGAAAGCTTTCACACCTCCTCCTTCAGCACATGCTTCTTTTTC
TCGCTGACGTAGGGCACCTTCTTGCTCTTCTTGGTGTGCTTGCGCACATT
GGCCTCCTTGACCTGCTCCTTCTCCTTGACCGTGCGCATCTTCTTCTGTG
CATTGAGCACGTGACGCGGCACCTGGCGATGGCGCGCGATGCGCTTGATC
TGCGGATGAGCGGCATACTTTTGCTTCAGCGCCTCCTGGTAATTGAAATT
GACGCGCTCACGTGGACGGATGACGCCCAGCTTTTCGGAGGCATTCGCCT
TCCACATGCGGACGTTCATTTCGTCGGAGCCGGAGAAAACGTATCGATTA
TCGAGGGACCAGGCCACGCAGACCACATGCTGCATGCGTTTTGTGTGGTA
AATATCCCGCGAGTGACTGTGGTGGGCATTGTAGATCCGAATGGTCTTGT
CGTAGCTGGCCGAGACGAATTCCTTGCCAGTGGGCGAGTAGTCAACATCG
GTGACAGCGGAAACATGGTCAAAGTGAACCTTCAGCGGCGTTTGCAGCTT
GCGAGTGTCAAAGGTATAAAGGTTGCAATCCTCGTTGGCCACTGTGAAGT
TGAACGCCTCCATGGGATTCCACGCGAGCTTGTTGCTCTTCATGGTTAGG
ACGACCTTCCTTAGTGGCTGCGCCTCTCTCTGATCGTACAGGATAATGCT
GCGATCGCTGGCACAGCACGCCAGGATGCTTGTTTCCACGGGGTTATAGG
ATATGGTGTGAAGGGTATCGACGCCCCACTTCAATGTCTTCAAAGGATCG
TTGTGCCTTTCGTCCCAAATGGCGCATACCTCGCCACAGGTGGCGAACTT
GTTATCCCTGCGATTGTGCGAGATGCCGTGCAGTCC

BS08149.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7275-PA 1341 CG7275-RA 472..1341 886..17 4350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7275-RA 1495 CG7275-RA 573..1442 886..17 4350 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15499953..15500508 572..17 2780 100 Minus
3L 28110227 3L 15499583..15499896 886..573 1570 100 Minus
Blast to na_te.dros performed on 2015-02-03 11:32:09 has no hits.

BS08149.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:05 Download gff for BS08149.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7275-PA 472..1341 17..886 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:35 Download gff for BS08149.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7275-PA 472..1341 17..886 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:41:06 Download gff for BS08149.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 573..1442 17..886 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:34:17 Download gff for BS08149.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 573..1442 17..886 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:34:17 Download gff for BS08149.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15499583..15499896 573..886 100 -> Minus
3L 15499953..15500508 17..572 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:41:06 Download gff for BS08149.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15492683..15492996 573..886 100 -> Minus
arm_3L 15493053..15493608 17..572 100   Minus

BS08149.5prime Sequence

841 bp (782 high quality bases) assembled on 2006-01-06

> BS08149.5prime
GAAGTTATCAGTCGACATGAAGGTGAAAATGATTAGTCGCAATCCGGATA
ACTATGTCCGAGAAACCAAACTGCAACAGCACAAAATGCCCAGGAACTAC
GATCCTTCGCTGCATCCTTTGGAGGGTCCCAGGGAATACGTGCGTGCCCT
GAATGCCACCAAGTTGGATCGAGTATTTGCCAAACCCTTCGTCTGCAATT
TGAGCGGGCATCGCGATGGAGTCTCCTGCTTCGGAAAGCATCCCAAGCAA
CTTTCCACCTTGGCCACCGGCGCCTATGACGGCGAAGTGCGCATTTGGGA
CTTGGCGAATCGTATCAGCTCTCGGAACTTTGTGGCCCACGACGGTTTCG
TTCGCGGCATTGCTTACACCCAGAACGGAGGTCGCATTTTCACCGTGGGA
GATGATAAAACCATCAAGGTTTGGAAAGCAGAGGCTCCGGAAGTCGGCGA
GGATGAGGTGCCGGTGAACACTATACTGAGTAAATTTGGACTGCACGGCA
TCTCGCACAATCGCAGGGATAACAAGTTCGCCACCTGTGGCGAGGTATGC
GCCATTTGGGACGAAAGGCACAACGATCCTTTGAAGACATTGAAGTGGGG
CGTCGATACCCTTCACACCATATCCTATAACCCCGTGGAAACAAGCATCC
TGGCGTGCTGTGCCAGCGATCGCAGCATTATCCTGTACGATCAGAGAGAG
GCGCAGCCACTAAGGAAGGTCGTCCTAACCATGAAGAGCAACAAGCTCGC
GTGGAATCCCATGGAGGCGTTCAACTTCACAGTGGCCAACGAGGATTGCA
ACCTTTATACCTTTGACACTCGCAAGCTGCAAACGCCGCTG

BS08149.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7275-PA 1341 CG7275-RA 1..825 17..841 4125 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7275-RA 1495 CG7275-RA 102..926 17..841 4125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15499182..15499896 87..801 3575 100 Plus
3L 28110227 3L 15499060..15499129 17..86 350 100 Plus
3L 28110227 3L 15499953..15499992 802..841 200 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:59:01 has no hits.

BS08149.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:06 Download gff for BS08149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7275-PA 1..825 17..841 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:36 Download gff for BS08149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7275-PA 1..825 17..841 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:52:07 Download gff for BS08149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 96..926 7..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:57:25 Download gff for BS08149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 96..926 7..841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:57:25 Download gff for BS08149.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15499054..15499129 7..86 95 -> Plus
3L 15499182..15499896 87..801 100 -> Plus
3L 15499953..15499992 802..841 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:52:07 Download gff for BS08149.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15492154..15492229 7..86 95 -> Plus
arm_3L 15492282..15492996 87..801 100 -> Plus
arm_3L 15493053..15493092 802..841 100   Plus

BS08149.complete Sequence

1373 bp (1373 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636113

> BS08149.complete
GAAGTTATCAGTCGACATGAAGGTGAAAATGATTAGTCGCAATCCGGATA
ACTATGTCCGAGAAACCAAACTGCAACAGCACAAAATGCCCAGGAACTAC
GATCCTTCGCTGCATCCTTTGGAGGGTCCCAGGGAATACGTGCGTGCCCT
GAATGCCACCAAGTTGGATCGAGTATTTGCCAAACCCTTCGTCTGCAATT
TGAGCGGGCATCGCGATGGAGTCTCCTGCTTCGGAAAGCATCCCAAGCAA
CTTTCCACCTTGGCCACCGGCGCCTATGACGGCGAAGTGCGCATTTGGGA
CTTGGCGAATCGTATCAGCTCTCGGAACTTTGTGGCCCACGACGGTTTCG
TTCGCGGCATTGCTTACACCCAGAACGGAGGTCGCATTTTCACCGTGGGA
GATGATAAAACCATCAAGGTTTGGAAAGCAGAGGCTCCGGAAGTCGGCGA
GGATGAGGTGCCGGTGAACACTATACTGAGTAAATTTGGACTGCACGGCA
TCTCGCACAATCGCAGGGATAACAAGTTCGCCACCTGTGGCGAGGTATGC
GCCATTTGGGACGAAAGGCACAACGATCCTTTGAAGACATTGAAGTGGGG
CGTCGATACCCTTCACACCATATCCTATAACCCCGTGGAAACAAGCATCC
TGGCGTGCTGTGCCAGCGATCGCAGCATTATCCTGTACGATCAGAGAGAG
GCGCAGCCACTAAGGAAGGTCGTCCTAACCATGAAGAGCAACAAGCTCGC
GTGGAATCCCATGGAGGCGTTCAACTTCACAGTGGCCAACGAGGATTGCA
ACCTTTATACCTTTGACACTCGCAAGCTGCAAACGCCGCTGAAGGTTCAC
TTTGACCATGTTTCCGCTGTCACCGATGTTGACTACTCGCCCACTGGCAA
GGAATTCGTCTCGGCCAGCTACGACAAGACCATTCGGATCTACAATGCCC
ACCACAGTCACTCGCGGGATATTTACCACACAAAACGCATGCAGCATGTG
GTCTGCGTGGCCTGGTCCCTCGATAATCGATACGTTTTCTCCGGCTCCGA
CGAAATGAACGTCCGCATGTGGAAGGCGAATGCCTCCGAAAAGCTGGGCG
TCATCCGTCCACGTGAGCGCGTCAATTTCAATTACCAGGAGGCGCTGAAG
CAAAAGTATGCCGCTCATCCGCAGATCAAGCGCATCGCGCGCCATCGCCA
GGTGCCGCGTCACGTGCTCAATGCACAGAAGAAGATGCGCACGGTCAAGG
AGAAGGAGCAGGTCAAGGAGGCCAATGTGCGCAAGCACACCAAGAAGAGC
AAGAAGGTGCCCTACGTCAGCGAGAAAAAGAAGCATGTGCTGAAGGAGGA
GGTGTGAAAGCTTTCTAGACCAT

BS08149.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7275-RA 1341 CG7275-PA 1..1341 17..1357 6705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7275-RA 1495 CG7275-RA 102..1442 17..1357 6705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15499182..15499896 87..801 3575 100 Plus
3L 28110227 3L 15499953..15500508 802..1357 2780 100 Plus
3L 28110227 3L 15499060..15499129 17..86 350 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:02:23 has no hits.

BS08149.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:10 Download gff for BS08149.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 1..1341 17..1357 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:15 Download gff for BS08149.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 91..1437 7..1357 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:10 Download gff for BS08149.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 102..1441 17..1356 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:11 Download gff for BS08149.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 91..1437 7..1357 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:09 Download gff for BS08149.complete
Subject Subject Range Query Range Percent Splice Strand
CG7275-RA 102..1441 17..1356 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:09 Download gff for BS08149.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15499060..15499129 17..86 100 -> Plus
3L 15499182..15499896 87..801 100 -> Plus
3L 15499953..15500507 802..1356 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:10 Download gff for BS08149.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15492160..15492229 17..86 100 -> Plus
arm_3L 15492282..15492996 87..801 100 -> Plus
arm_3L 15493053..15493607 802..1356 100   Plus

BS08149.pep Sequence

Translation from 16 to 1356

> BS08149.pep
MKVKMISRNPDNYVRETKLQQHKMPRNYDPSLHPLEGPREYVRALNATKL
DRVFAKPFVCNLSGHRDGVSCFGKHPKQLSTLATGAYDGEVRIWDLANRI
SSRNFVAHDGFVRGIAYTQNGGRIFTVGDDKTIKVWKAEAPEVGEDEVPV
NTILSKFGLHGISHNRRDNKFATCGEVCAIWDERHNDPLKTLKWGVDTLH
TISYNPVETSILACCASDRSIILYDQREAQPLRKVVLTMKSNKLAWNPME
AFNFTVANEDCNLYTFDTRKLQTPLKVHFDHVSAVTDVDYSPTGKEFVSA
SYDKTIRIYNAHHSHSRDIYHTKRMQHVVCVAWSLDNRYVFSGSDEMNVR
MWKANASEKLGVIRPRERVNFNYQEALKQKYAAHPQIKRIARHRQVPRHV
LNAQKKMRTVKEKEQVKEANVRKHTKKSKKVPYVSEKKKHVLKEEV*

BS08149.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7275-PA 446 CG7275-PA 1..446 1..446 2379 100 Plus
Poc1-PA 391 CG10191-PA 13..300 61..355 203 24.4 Plus
Poc1-PB 403 CG10191-PB 13..300 61..355 203 24.4 Plus
CG3436-PC 347 CG3436-PC 91..340 59..306 167 26.3 Plus
CG3436-PA 347 CG3436-PA 91..340 59..306 167 26.3 Plus