Clone Sequence Records
BS08149.3prime Sequence
886 bp (789 high quality bases) assembled on 2006-01-06
> BS08149.3prime
ATGGTCTAGAAAGCTTTCACACCTCCTCCTTCAGCACATGCTTCTTTTTC
TCGCTGACGTAGGGCACCTTCTTGCTCTTCTTGGTGTGCTTGCGCACATT
GGCCTCCTTGACCTGCTCCTTCTCCTTGACCGTGCGCATCTTCTTCTGTG
CATTGAGCACGTGACGCGGCACCTGGCGATGGCGCGCGATGCGCTTGATC
TGCGGATGAGCGGCATACTTTTGCTTCAGCGCCTCCTGGTAATTGAAATT
GACGCGCTCACGTGGACGGATGACGCCCAGCTTTTCGGAGGCATTCGCCT
TCCACATGCGGACGTTCATTTCGTCGGAGCCGGAGAAAACGTATCGATTA
TCGAGGGACCAGGCCACGCAGACCACATGCTGCATGCGTTTTGTGTGGTA
AATATCCCGCGAGTGACTGTGGTGGGCATTGTAGATCCGAATGGTCTTGT
CGTAGCTGGCCGAGACGAATTCCTTGCCAGTGGGCGAGTAGTCAACATCG
GTGACAGCGGAAACATGGTCAAAGTGAACCTTCAGCGGCGTTTGCAGCTT
GCGAGTGTCAAAGGTATAAAGGTTGCAATCCTCGTTGGCCACTGTGAAGT
TGAACGCCTCCATGGGATTCCACGCGAGCTTGTTGCTCTTCATGGTTAGG
ACGACCTTCCTTAGTGGCTGCGCCTCTCTCTGATCGTACAGGATAATGCT
GCGATCGCTGGCACAGCACGCCAGGATGCTTGTTTCCACGGGGTTATAGG
ATATGGTGTGAAGGGTATCGACGCCCCACTTCAATGTCTTCAAAGGATCG
TTGTGCCTTTCGTCCCAAATGGCGCATACCTCGCCACAGGTGGCGAACTT
GTTATCCCTGCGATTGTGCGAGATGCCGTGCAGTCC
BS08149.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7275-PA | 1341 | CG7275-RA | 472..1341 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7275-RA | 1495 | CG7275-RA | 573..1442 | 886..17 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:32:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15499953..15500508 | 572..17 | 2780 | 100 | Minus |
3L | 28110227 | 3L | 15499583..15499896 | 886..573 | 1570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 11:32:09 has no hits.
BS08149.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:05 Download gff for
BS08149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-PA | 472..1341 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:35 Download gff for
BS08149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-PA | 472..1341 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:41:06 Download gff for
BS08149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-RA | 573..1442 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:34:17 Download gff for
BS08149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-RA | 573..1442 | 17..886 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:34:17 Download gff for
BS08149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15499583..15499896 | 573..886 | 100 | -> | Minus |
3L | 15499953..15500508 | 17..572 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:41:06 Download gff for
BS08149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15492683..15492996 | 573..886 | 100 | -> | Minus |
arm_3L | 15493053..15493608 | 17..572 | 100 | | Minus |
BS08149.5prime Sequence
841 bp (782 high quality bases) assembled on 2006-01-06
> BS08149.5prime
GAAGTTATCAGTCGACATGAAGGTGAAAATGATTAGTCGCAATCCGGATA
ACTATGTCCGAGAAACCAAACTGCAACAGCACAAAATGCCCAGGAACTAC
GATCCTTCGCTGCATCCTTTGGAGGGTCCCAGGGAATACGTGCGTGCCCT
GAATGCCACCAAGTTGGATCGAGTATTTGCCAAACCCTTCGTCTGCAATT
TGAGCGGGCATCGCGATGGAGTCTCCTGCTTCGGAAAGCATCCCAAGCAA
CTTTCCACCTTGGCCACCGGCGCCTATGACGGCGAAGTGCGCATTTGGGA
CTTGGCGAATCGTATCAGCTCTCGGAACTTTGTGGCCCACGACGGTTTCG
TTCGCGGCATTGCTTACACCCAGAACGGAGGTCGCATTTTCACCGTGGGA
GATGATAAAACCATCAAGGTTTGGAAAGCAGAGGCTCCGGAAGTCGGCGA
GGATGAGGTGCCGGTGAACACTATACTGAGTAAATTTGGACTGCACGGCA
TCTCGCACAATCGCAGGGATAACAAGTTCGCCACCTGTGGCGAGGTATGC
GCCATTTGGGACGAAAGGCACAACGATCCTTTGAAGACATTGAAGTGGGG
CGTCGATACCCTTCACACCATATCCTATAACCCCGTGGAAACAAGCATCC
TGGCGTGCTGTGCCAGCGATCGCAGCATTATCCTGTACGATCAGAGAGAG
GCGCAGCCACTAAGGAAGGTCGTCCTAACCATGAAGAGCAACAAGCTCGC
GTGGAATCCCATGGAGGCGTTCAACTTCACAGTGGCCAACGAGGATTGCA
ACCTTTATACCTTTGACACTCGCAAGCTGCAAACGCCGCTG
BS08149.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7275-PA | 1341 | CG7275-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7275-RA | 1495 | CG7275-RA | 102..926 | 17..841 | 4125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15499182..15499896 | 87..801 | 3575 | 100 | Plus |
3L | 28110227 | 3L | 15499060..15499129 | 17..86 | 350 | 100 | Plus |
3L | 28110227 | 3L | 15499953..15499992 | 802..841 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:59:01 has no hits.
BS08149.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:06 Download gff for
BS08149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-PA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:36 Download gff for
BS08149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-PA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:52:07 Download gff for
BS08149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-RA | 96..926 | 7..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:57:25 Download gff for
BS08149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-RA | 96..926 | 7..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:57:25 Download gff for
BS08149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15499054..15499129 | 7..86 | 95 | -> | Plus |
3L | 15499182..15499896 | 87..801 | 100 | -> | Plus |
3L | 15499953..15499992 | 802..841 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:52:07 Download gff for
BS08149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15492154..15492229 | 7..86 | 95 | -> | Plus |
arm_3L | 15492282..15492996 | 87..801 | 100 | -> | Plus |
arm_3L | 15493053..15493092 | 802..841 | 100 | | Plus |
BS08149.complete Sequence
1373 bp (1373 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636113
> BS08149.complete
GAAGTTATCAGTCGACATGAAGGTGAAAATGATTAGTCGCAATCCGGATA
ACTATGTCCGAGAAACCAAACTGCAACAGCACAAAATGCCCAGGAACTAC
GATCCTTCGCTGCATCCTTTGGAGGGTCCCAGGGAATACGTGCGTGCCCT
GAATGCCACCAAGTTGGATCGAGTATTTGCCAAACCCTTCGTCTGCAATT
TGAGCGGGCATCGCGATGGAGTCTCCTGCTTCGGAAAGCATCCCAAGCAA
CTTTCCACCTTGGCCACCGGCGCCTATGACGGCGAAGTGCGCATTTGGGA
CTTGGCGAATCGTATCAGCTCTCGGAACTTTGTGGCCCACGACGGTTTCG
TTCGCGGCATTGCTTACACCCAGAACGGAGGTCGCATTTTCACCGTGGGA
GATGATAAAACCATCAAGGTTTGGAAAGCAGAGGCTCCGGAAGTCGGCGA
GGATGAGGTGCCGGTGAACACTATACTGAGTAAATTTGGACTGCACGGCA
TCTCGCACAATCGCAGGGATAACAAGTTCGCCACCTGTGGCGAGGTATGC
GCCATTTGGGACGAAAGGCACAACGATCCTTTGAAGACATTGAAGTGGGG
CGTCGATACCCTTCACACCATATCCTATAACCCCGTGGAAACAAGCATCC
TGGCGTGCTGTGCCAGCGATCGCAGCATTATCCTGTACGATCAGAGAGAG
GCGCAGCCACTAAGGAAGGTCGTCCTAACCATGAAGAGCAACAAGCTCGC
GTGGAATCCCATGGAGGCGTTCAACTTCACAGTGGCCAACGAGGATTGCA
ACCTTTATACCTTTGACACTCGCAAGCTGCAAACGCCGCTGAAGGTTCAC
TTTGACCATGTTTCCGCTGTCACCGATGTTGACTACTCGCCCACTGGCAA
GGAATTCGTCTCGGCCAGCTACGACAAGACCATTCGGATCTACAATGCCC
ACCACAGTCACTCGCGGGATATTTACCACACAAAACGCATGCAGCATGTG
GTCTGCGTGGCCTGGTCCCTCGATAATCGATACGTTTTCTCCGGCTCCGA
CGAAATGAACGTCCGCATGTGGAAGGCGAATGCCTCCGAAAAGCTGGGCG
TCATCCGTCCACGTGAGCGCGTCAATTTCAATTACCAGGAGGCGCTGAAG
CAAAAGTATGCCGCTCATCCGCAGATCAAGCGCATCGCGCGCCATCGCCA
GGTGCCGCGTCACGTGCTCAATGCACAGAAGAAGATGCGCACGGTCAAGG
AGAAGGAGCAGGTCAAGGAGGCCAATGTGCGCAAGCACACCAAGAAGAGC
AAGAAGGTGCCCTACGTCAGCGAGAAAAAGAAGCATGTGCTGAAGGAGGA
GGTGTGAAAGCTTTCTAGACCAT
BS08149.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:02:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7275-RA | 1341 | CG7275-PA | 1..1341 | 17..1357 | 6705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:02:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7275-RA | 1495 | CG7275-RA | 102..1442 | 17..1357 | 6705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15499182..15499896 | 87..801 | 3575 | 100 | Plus |
3L | 28110227 | 3L | 15499953..15500508 | 802..1357 | 2780 | 100 | Plus |
3L | 28110227 | 3L | 15499060..15499129 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:02:23 has no hits.
BS08149.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:10 Download gff for
BS08149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-RA | 1..1341 | 17..1357 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:15 Download gff for
BS08149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-RA | 91..1437 | 7..1357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:10 Download gff for
BS08149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-RA | 102..1441 | 17..1356 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:11 Download gff for
BS08149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-RA | 91..1437 | 7..1357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:09 Download gff for
BS08149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7275-RA | 102..1441 | 17..1356 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:09 Download gff for
BS08149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15499060..15499129 | 17..86 | 100 | -> | Plus |
3L | 15499182..15499896 | 87..801 | 100 | -> | Plus |
3L | 15499953..15500507 | 802..1356 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:10 Download gff for
BS08149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15492160..15492229 | 17..86 | 100 | -> | Plus |
arm_3L | 15492282..15492996 | 87..801 | 100 | -> | Plus |
arm_3L | 15493053..15493607 | 802..1356 | 100 | | Plus |
BS08149.pep Sequence
Translation from 16 to 1356
> BS08149.pep
MKVKMISRNPDNYVRETKLQQHKMPRNYDPSLHPLEGPREYVRALNATKL
DRVFAKPFVCNLSGHRDGVSCFGKHPKQLSTLATGAYDGEVRIWDLANRI
SSRNFVAHDGFVRGIAYTQNGGRIFTVGDDKTIKVWKAEAPEVGEDEVPV
NTILSKFGLHGISHNRRDNKFATCGEVCAIWDERHNDPLKTLKWGVDTLH
TISYNPVETSILACCASDRSIILYDQREAQPLRKVVLTMKSNKLAWNPME
AFNFTVANEDCNLYTFDTRKLQTPLKVHFDHVSAVTDVDYSPTGKEFVSA
SYDKTIRIYNAHHSHSRDIYHTKRMQHVVCVAWSLDNRYVFSGSDEMNVR
MWKANASEKLGVIRPRERVNFNYQEALKQKYAAHPQIKRIARHRQVPRHV
LNAQKKMRTVKEKEQVKEANVRKHTKKSKKVPYVSEKKKHVLKEEV*
BS08149.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7275-PA | 446 | CG7275-PA | 1..446 | 1..446 | 2379 | 100 | Plus |
Poc1-PA | 391 | CG10191-PA | 13..300 | 61..355 | 203 | 24.4 | Plus |
Poc1-PB | 403 | CG10191-PB | 13..300 | 61..355 | 203 | 24.4 | Plus |
CG3436-PC | 347 | CG3436-PC | 91..340 | 59..306 | 167 | 26.3 | Plus |
CG3436-PA | 347 | CG3436-PA | 91..340 | 59..306 | 167 | 26.3 | Plus |