Clone Sequence Records
BS08151.3prime Sequence
846 bp (822 high quality bases) assembled on 2006-01-06
> BS08151.3prime
ATGGTCTAGAAAGCTTTCAAACACTGTACAGGGTGGTGTTATCGGGATCC
ACCTGTACCGCCTGGACAATGAAGCGTTTGCGATCCAAGACATCGATGGG
TGCAGCCGGGTCGGTGCACTTGCACTGCGTCTCATCGAAGACGGTGCCGG
TGGTGCAGCTCTGGTTGTAGCGGCAAACGCAGGTGCAATTGTCGTCCACC
CAATACTTGTTCTCGGCCTGCTCCAGGCACTTGTCCCGGGCATCCGTGTT
GTGGCACTCGCAGCGGCACAAATCCTTGCGATACGACTGGTACACGTTGC
AGTCCTCCGCCTTCGTGCGACAATCGCAGCGGCACTGCGTATGCTGCTCC
ACGGTGATGATGGTGAACGGTCTGCGTCCGCTGGTGGCCGCCCGGTCCAC
CTTGCGCACCCGCAGCTGCACCTGCTCTACCTCCGTTGGCTGGCAGGAGA
TCAGCGTGGATCCGCAGCATCCATTGCATCGGCTGATCCGCGTGCACGCG
GGCATATAGTAGTAGTTCGCCTCGTCCTCCGCCGGTGGCTTCAGCTCCAC
GATCGTCGGTTGCGGGGAGCAGCTCGCCGGCGTTGCATTCCTCACGGTTG
ATTTCATGATGCTGCGCTTAAAGTTTTCCTTGGAGGAGGGCATCTCGCCG
GACACATCGTAGTCGGCGGTCACGTTGGTCAGCTCAGCGGACACGGACAG
TGGGAGCGTCAATGGTGTTCCGGCTTCCGCAGCTGCTCCTTGGCAGCAGC
TGCCCTCCAGTGCACCCGGCGCCGCACTGGGATCGTCCGCCTGGCGGAGC
AGGCGCACCTTGGTCTGCGTGGAGGAGGAGGACGTGGCGGCGGCGT
BS08151.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7103-PA | 978 | Pvf1-RA | 149..978 | 846..17 | 4150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf1-RB | 1804 | CG7103-RB | 384..1213 | 846..17 | 4150 | 100 | Minus |
Pvf1-RA | 1896 | CG7103-RA | 476..1305 | 846..17 | 4150 | 100 | Minus |
Pvf1-RC | 2783 | CG7103-RC | 476..1212 | 846..110 | 3685 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:55:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18840630..18841120 | 600..110 | 2455 | 100 | Minus |
X | 23542271 | X | 18838203..18838342 | 846..707 | 700 | 100 | Minus |
X | 23542271 | X | 18842218..18842310 | 109..17 | 465 | 100 | Minus |
X | 23542271 | X | 18840381..18840460 | 707..628 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:55:47 has no hits.
BS08151.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:09 Download gff for
BS08151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-PA | 149..978 | 17..846 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:40 Download gff for
BS08151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7103-PA | 149..978 | 17..846 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:34:23 Download gff for
BS08151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-RA | 476..1305 | 17..846 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:23 Download gff for
BS08151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-RA | 476..1305 | 17..846 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:23 Download gff for
BS08151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18838203..18838342 | 707..846 | 100 | -> | Minus |
X | 18840382..18840460 | 628..706 | 100 | -> | Minus |
X | 18840532..18840558 | 601..627 | 100 | -> | Minus |
X | 18840630..18841120 | 110..600 | 100 | -> | Minus |
X | 18842218..18842310 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:34:23 Download gff for
BS08151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18732236..18732375 | 707..846 | 100 | -> | Minus |
arm_X | 18734415..18734493 | 628..706 | 100 | -> | Minus |
arm_X | 18734565..18734591 | 601..627 | 100 | -> | Minus |
arm_X | 18734663..18735153 | 110..600 | 100 | -> | Minus |
arm_X | 18736251..18736343 | 17..109 | 100 | | Minus |
BS08151.5prime Sequence
897 bp (790 high quality bases) assembled on 2006-01-06
> BS08151.5prime
GAAGTTATCAGTCGACATGGCCATGTCCCGAATCCGAATTCTGAAGCCCA
TGCAGCATCCATTGCTCATCCTGCCAGTGCTCCTTCTCGTCCTGATCGTC
AGCGAGGCAGCGGCGGGCTCCTTGGTGTCCCCGAACAACAGGCAACCATC
GCAGAGGTTCTTCTACGCCGCCGCCACGTCCTCCTCCTCCACGCAGACCA
AGGTGCGCCTGCTCCGCCAGGCGGACGATCCCAGTGCGGCGCCGGGTGCA
CTGGAGGGCAGCTGCTGCCAAGGAGCAGCTGCGGAAGCCGGAACACCATT
GACGCTCCCACTGTCCGTGTCCGCTGAGCTGACCAACGTGACCGCCGACT
ACGATGTGTCCGGCGAGATGCCCTCCTCCAAGGAAAACTTTAAGCGCAGC
ATCATGAAATCAACCGTGAGGAATGCAACGCCGGCGAGCTGCTCCCCGCA
ACCGACGATCGTGGAGCTGAAGCCACCGGCGGAGGACGAGGCGAACTACT
ACTATATGCCCGCGTGCACGCGGATCAGCCGATGCAATGGATGCTGCGGA
TCCACGCTGATCTCCTGCCAGCCAACGGAGGTAGAGCAGGTGCAGCTGCG
GGTGCGCAAGGTGGACCGGGCGGCCACCAGCGGACGCAGACCGTTCACCA
TCATCACCGTGGAGCAGCATACGCAGTGCCGCTGCGATTGTCGCACGAAG
GCGGAGGACTGCAACGTGTACCAGTCGTATCGCAAGGATTTGTGCCGCTG
CGAGTGCCACAACACGGATGCCCGGGACAAGTGCCTGGAGCANGCCGAGA
ACAAGTATTGGGTGGACGACAATTGCACCTGCGTTTGCCGCTACAACCAG
AGCTGCACCACCGGCACCGTCTTCGATGAGACGCAGTGCAAGTGCAC
BS08151.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7103-PA | 978 | Pvf1-RA | 1..881 | 17..897 | 4386 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf1-RC | 2783 | CG7103-RC | 327..1208 | 16..897 | 4399 | 99.9 | Plus |
Pvf1-RA | 1896 | CG7103-RA | 327..1208 | 16..897 | 4399 | 99.9 | Plus |
Pvf1-RB | 1804 | CG7103-RB | 266..1116 | 47..897 | 4244 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18840630..18841116 | 411..897 | 2424 | 99.8 | Plus |
X | 23542271 | X | 18838054..18838342 | 16..304 | 1445 | 100 | Plus |
X | 23542271 | X | 18840381..18840460 | 304..383 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:59:56 has no hits.
BS08151.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:09 Download gff for
BS08151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:41 Download gff for
BS08151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7103-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:30:43 Download gff for
BS08151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-RA | 321..1208 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:44:02 Download gff for
BS08151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-RA | 321..1208 | 9..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:44:02 Download gff for
BS08151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18838048..18838342 | 9..304 | 98 | -> | Plus |
X | 18840382..18840460 | 305..383 | 100 | -> | Plus |
X | 18840532..18840558 | 384..410 | 100 | -> | Plus |
X | 18840630..18841116 | 411..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:30:43 Download gff for
BS08151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18732081..18732375 | 9..304 | 98 | -> | Plus |
arm_X | 18734415..18734493 | 305..383 | 100 | -> | Plus |
arm_X | 18734565..18734591 | 384..410 | 100 | -> | Plus |
arm_X | 18734663..18735149 | 411..897 | 99 | | Plus |
BS08151.complete Sequence
1010 bp (1010 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636114
> BS08151.complete
GAAGTTATCAGTCGACATGGCCATGTCCCGAATCCGAATTCTGAAGCCCA
TGCAGCATCCATTGCTCATCCTGCCAGTGCTCCTTCTCGTCCTGATCGTC
AGCGAGGCAGCGGCGGGCTCCTTGGTGTCCCCGAACAACAGGCAACCATC
GCAGAGGTTCTTCTACGCCGCCGCCACGTCCTCCTCCTCCACGCAGACCA
AGGTGCGCCTGCTCCGCCAGGCGGACGATCCCAGTGCGGCGCCGGGTGCA
CTGGAGGGCAGCTGCTGCCAAGGAGCAGCTGCGGAAGCCGGAACACCATT
GACGCTCCCACTGTCCGTGTCCGCTGAGCTGACCAACGTGACCGCCGACT
ACGATGTGTCCGGCGAGATGCCCTCCTCCAAGGAAAACTTTAAGCGCAGC
ATCATGAAATCAACCGTGAGGAATGCAACGCCGGCGAGCTGCTCCCCGCA
ACCGACGATCGTGGAGCTGAAGCCACCGGCGGAGGACGAGGCGAACTACT
ACTATATGCCCGCGTGCACGCGGATCAGCCGATGCAATGGATGCTGCGGA
TCCACGCTGATCTCCTGCCAGCCAACGGAGGTAGAGCAGGTGCAGCTGCG
GGTGCGCAAGGTGGACCGGGCGGCCACCAGCGGACGCAGACCGTTCACCA
TCATCACCGTGGAGCAGCATACGCAGTGCCGCTGCGATTGTCGCACGAAG
GCGGAGGACTGCAACGTGTACCAGTCGTATCGCAAGGATTTGTGCCGCTG
CGAGTGCCACAACACGGATGCCCGGGACAAGTGCCTGGAGCAGGCCGAGA
ACAAGTATTGGGTGGACGACAATTGCACCTGCGTTTGCCGCTACAACCAG
AGCTGCACCACCGGCACCGTCTTCGATGAGACGCAGTGCAAGTGCACCGA
CCCGGCTGCACCCATCGATGTCTTGGATCGCAAACGCTTCATTGTCCAGG
CGGTACAGGTGGATCCCGATAACACCACCCTGTACAGTGTTTGAAAGCTT
TCTAGACCAT
BS08151.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf1-RA | 978 | CG7103-PA | 1..978 | 17..994 | 4890 | 100 | Plus |
Pvf1-RB | 945 | CG7103-PB | 1..945 | 50..994 | 4725 | 100 | Plus |
Pvf1-RC | 903 | CG7103-PC | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf1-RA | 1896 | CG7103-RA | 327..1305 | 16..994 | 4895 | 100 | Plus |
Pvf1-RB | 1804 | CG7103-RB | 266..1213 | 47..994 | 4740 | 100 | Plus |
Pvf1-RC | 2783 | CG7103-RC | 327..1212 | 16..901 | 4430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18840630..18841120 | 411..901 | 2455 | 100 | Plus |
X | 23542271 | X | 18838054..18838342 | 16..304 | 1445 | 100 | Plus |
X | 23542271 | X | 18842218..18842310 | 902..994 | 465 | 100 | Plus |
X | 23542271 | X | 18840381..18840460 | 304..383 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:23:33 has no hits.
BS08151.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:12 Download gff for
BS08151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-RA | 1..978 | 17..994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:17 Download gff for
BS08151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-RA | 299..1283 | 9..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:17 Download gff for
BS08151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-RA | 328..1304 | 17..993 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:12 Download gff for
BS08151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-RA | 299..1283 | 9..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:41 Download gff for
BS08151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-RA | 328..1304 | 17..993 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:41 Download gff for
BS08151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18838055..18838342 | 17..304 | 100 | -> | Plus |
X | 18840382..18840460 | 305..383 | 100 | -> | Plus |
X | 18840532..18840558 | 384..410 | 100 | -> | Plus |
X | 18840630..18841120 | 411..901 | 100 | -> | Plus |
X | 18842218..18842309 | 902..993 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:17 Download gff for
BS08151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18732088..18732375 | 17..304 | 100 | -> | Plus |
arm_X | 18734415..18734493 | 305..383 | 100 | -> | Plus |
arm_X | 18734565..18734591 | 384..410 | 100 | -> | Plus |
arm_X | 18734663..18735153 | 411..901 | 100 | -> | Plus |
arm_X | 18736251..18736342 | 902..993 | 100 | | Plus |
BS08151.pep Sequence
Translation from 16 to 993
> BS08151.pep
MAMSRIRILKPMQHPLLILPVLLLVLIVSEAAAGSLVSPNNRQPSQRFFY
AAATSSSSTQTKVRLLRQADDPSAAPGALEGSCCQGAAAEAGTPLTLPLS
VSAELTNVTADYDVSGEMPSSKENFKRSIMKSTVRNATPASCSPQPTIVE
LKPPAEDEANYYYMPACTRISRCNGCCGSTLISCQPTEVEQVQLRVRKVD
RAATSGRRPFTIITVEQHTQCRCDCRTKAEDCNVYQSYRKDLCRCECHNT
DARDKCLEQAENKYWVDDNCTCVCRYNQSCTTGTVFDETQCKCTDPAAPI
DVLDRKRFIVQAVQVDPDNTTLYSV*
BS08151.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf1-PA | 325 | CG7103-PA | 1..325 | 1..325 | 1722 | 100 | Plus |
Pvf1-PB | 314 | CG7103-PB | 1..314 | 12..325 | 1670 | 100 | Plus |
Pvf1-PC | 300 | CG7103-PC | 1..295 | 1..295 | 1571 | 100 | Plus |