Clone BS08151 Report

Search the DGRC for BS08151

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:81
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptPvf1-RA
Protein status:BS08151.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08151.3prime Sequence

846 bp (822 high quality bases) assembled on 2006-01-06

> BS08151.3prime
ATGGTCTAGAAAGCTTTCAAACACTGTACAGGGTGGTGTTATCGGGATCC
ACCTGTACCGCCTGGACAATGAAGCGTTTGCGATCCAAGACATCGATGGG
TGCAGCCGGGTCGGTGCACTTGCACTGCGTCTCATCGAAGACGGTGCCGG
TGGTGCAGCTCTGGTTGTAGCGGCAAACGCAGGTGCAATTGTCGTCCACC
CAATACTTGTTCTCGGCCTGCTCCAGGCACTTGTCCCGGGCATCCGTGTT
GTGGCACTCGCAGCGGCACAAATCCTTGCGATACGACTGGTACACGTTGC
AGTCCTCCGCCTTCGTGCGACAATCGCAGCGGCACTGCGTATGCTGCTCC
ACGGTGATGATGGTGAACGGTCTGCGTCCGCTGGTGGCCGCCCGGTCCAC
CTTGCGCACCCGCAGCTGCACCTGCTCTACCTCCGTTGGCTGGCAGGAGA
TCAGCGTGGATCCGCAGCATCCATTGCATCGGCTGATCCGCGTGCACGCG
GGCATATAGTAGTAGTTCGCCTCGTCCTCCGCCGGTGGCTTCAGCTCCAC
GATCGTCGGTTGCGGGGAGCAGCTCGCCGGCGTTGCATTCCTCACGGTTG
ATTTCATGATGCTGCGCTTAAAGTTTTCCTTGGAGGAGGGCATCTCGCCG
GACACATCGTAGTCGGCGGTCACGTTGGTCAGCTCAGCGGACACGGACAG
TGGGAGCGTCAATGGTGTTCCGGCTTCCGCAGCTGCTCCTTGGCAGCAGC
TGCCCTCCAGTGCACCCGGCGCCGCACTGGGATCGTCCGCCTGGCGGAGC
AGGCGCACCTTGGTCTGCGTGGAGGAGGAGGACGTGGCGGCGGCGT

BS08151.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7103-PA 978 Pvf1-RA 149..978 846..17 4150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf1-RB 1804 CG7103-RB 384..1213 846..17 4150 100 Minus
Pvf1-RA 1896 CG7103-RA 476..1305 846..17 4150 100 Minus
Pvf1-RC 2783 CG7103-RC 476..1212 846..110 3685 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18840630..18841120 600..110 2455 100 Minus
X 23542271 X 18838203..18838342 846..707 700 100 Minus
X 23542271 X 18842218..18842310 109..17 465 100 Minus
X 23542271 X 18840381..18840460 707..628 400 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:55:47 has no hits.

BS08151.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:09 Download gff for BS08151.3prime
Subject Subject Range Query Range Percent Splice Strand
Pvf1-PA 149..978 17..846 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:40 Download gff for BS08151.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7103-PA 149..978 17..846 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:34:23 Download gff for BS08151.3prime
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 476..1305 17..846 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:23 Download gff for BS08151.3prime
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 476..1305 17..846 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:23 Download gff for BS08151.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18838203..18838342 707..846 100 -> Minus
X 18840382..18840460 628..706 100 -> Minus
X 18840532..18840558 601..627 100 -> Minus
X 18840630..18841120 110..600 100 -> Minus
X 18842218..18842310 17..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:34:23 Download gff for BS08151.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18732236..18732375 707..846 100 -> Minus
arm_X 18734415..18734493 628..706 100 -> Minus
arm_X 18734565..18734591 601..627 100 -> Minus
arm_X 18734663..18735153 110..600 100 -> Minus
arm_X 18736251..18736343 17..109 100   Minus

BS08151.5prime Sequence

897 bp (790 high quality bases) assembled on 2006-01-06

> BS08151.5prime
GAAGTTATCAGTCGACATGGCCATGTCCCGAATCCGAATTCTGAAGCCCA
TGCAGCATCCATTGCTCATCCTGCCAGTGCTCCTTCTCGTCCTGATCGTC
AGCGAGGCAGCGGCGGGCTCCTTGGTGTCCCCGAACAACAGGCAACCATC
GCAGAGGTTCTTCTACGCCGCCGCCACGTCCTCCTCCTCCACGCAGACCA
AGGTGCGCCTGCTCCGCCAGGCGGACGATCCCAGTGCGGCGCCGGGTGCA
CTGGAGGGCAGCTGCTGCCAAGGAGCAGCTGCGGAAGCCGGAACACCATT
GACGCTCCCACTGTCCGTGTCCGCTGAGCTGACCAACGTGACCGCCGACT
ACGATGTGTCCGGCGAGATGCCCTCCTCCAAGGAAAACTTTAAGCGCAGC
ATCATGAAATCAACCGTGAGGAATGCAACGCCGGCGAGCTGCTCCCCGCA
ACCGACGATCGTGGAGCTGAAGCCACCGGCGGAGGACGAGGCGAACTACT
ACTATATGCCCGCGTGCACGCGGATCAGCCGATGCAATGGATGCTGCGGA
TCCACGCTGATCTCCTGCCAGCCAACGGAGGTAGAGCAGGTGCAGCTGCG
GGTGCGCAAGGTGGACCGGGCGGCCACCAGCGGACGCAGACCGTTCACCA
TCATCACCGTGGAGCAGCATACGCAGTGCCGCTGCGATTGTCGCACGAAG
GCGGAGGACTGCAACGTGTACCAGTCGTATCGCAAGGATTTGTGCCGCTG
CGAGTGCCACAACACGGATGCCCGGGACAAGTGCCTGGAGCANGCCGAGA
ACAAGTATTGGGTGGACGACAATTGCACCTGCGTTTGCCGCTACAACCAG
AGCTGCACCACCGGCACCGTCTTCGATGAGACGCAGTGCAAGTGCAC

BS08151.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7103-PA 978 Pvf1-RA 1..881 17..897 4386 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf1-RC 2783 CG7103-RC 327..1208 16..897 4399 99.9 Plus
Pvf1-RA 1896 CG7103-RA 327..1208 16..897 4399 99.9 Plus
Pvf1-RB 1804 CG7103-RB 266..1116 47..897 4244 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18840630..18841116 411..897 2424 99.8 Plus
X 23542271 X 18838054..18838342 16..304 1445 100 Plus
X 23542271 X 18840381..18840460 304..383 400 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:59:56 has no hits.

BS08151.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:09 Download gff for BS08151.5prime
Subject Subject Range Query Range Percent Splice Strand
Pvf1-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:41 Download gff for BS08151.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7103-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:30:43 Download gff for BS08151.5prime
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 321..1208 9..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:44:02 Download gff for BS08151.5prime
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 321..1208 9..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:44:02 Download gff for BS08151.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18838048..18838342 9..304 98 -> Plus
X 18840382..18840460 305..383 100 -> Plus
X 18840532..18840558 384..410 100 -> Plus
X 18840630..18841116 411..897 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:30:43 Download gff for BS08151.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18732081..18732375 9..304 98 -> Plus
arm_X 18734415..18734493 305..383 100 -> Plus
arm_X 18734565..18734591 384..410 100 -> Plus
arm_X 18734663..18735149 411..897 99   Plus

BS08151.complete Sequence

1010 bp (1010 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636114

> BS08151.complete
GAAGTTATCAGTCGACATGGCCATGTCCCGAATCCGAATTCTGAAGCCCA
TGCAGCATCCATTGCTCATCCTGCCAGTGCTCCTTCTCGTCCTGATCGTC
AGCGAGGCAGCGGCGGGCTCCTTGGTGTCCCCGAACAACAGGCAACCATC
GCAGAGGTTCTTCTACGCCGCCGCCACGTCCTCCTCCTCCACGCAGACCA
AGGTGCGCCTGCTCCGCCAGGCGGACGATCCCAGTGCGGCGCCGGGTGCA
CTGGAGGGCAGCTGCTGCCAAGGAGCAGCTGCGGAAGCCGGAACACCATT
GACGCTCCCACTGTCCGTGTCCGCTGAGCTGACCAACGTGACCGCCGACT
ACGATGTGTCCGGCGAGATGCCCTCCTCCAAGGAAAACTTTAAGCGCAGC
ATCATGAAATCAACCGTGAGGAATGCAACGCCGGCGAGCTGCTCCCCGCA
ACCGACGATCGTGGAGCTGAAGCCACCGGCGGAGGACGAGGCGAACTACT
ACTATATGCCCGCGTGCACGCGGATCAGCCGATGCAATGGATGCTGCGGA
TCCACGCTGATCTCCTGCCAGCCAACGGAGGTAGAGCAGGTGCAGCTGCG
GGTGCGCAAGGTGGACCGGGCGGCCACCAGCGGACGCAGACCGTTCACCA
TCATCACCGTGGAGCAGCATACGCAGTGCCGCTGCGATTGTCGCACGAAG
GCGGAGGACTGCAACGTGTACCAGTCGTATCGCAAGGATTTGTGCCGCTG
CGAGTGCCACAACACGGATGCCCGGGACAAGTGCCTGGAGCAGGCCGAGA
ACAAGTATTGGGTGGACGACAATTGCACCTGCGTTTGCCGCTACAACCAG
AGCTGCACCACCGGCACCGTCTTCGATGAGACGCAGTGCAAGTGCACCGA
CCCGGCTGCACCCATCGATGTCTTGGATCGCAAACGCTTCATTGTCCAGG
CGGTACAGGTGGATCCCGATAACACCACCCTGTACAGTGTTTGAAAGCTT
TCTAGACCAT

BS08151.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf1-RA 978 CG7103-PA 1..978 17..994 4890 100 Plus
Pvf1-RB 945 CG7103-PB 1..945 50..994 4725 100 Plus
Pvf1-RC 903 CG7103-PC 1..885 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf1-RA 1896 CG7103-RA 327..1305 16..994 4895 100 Plus
Pvf1-RB 1804 CG7103-RB 266..1213 47..994 4740 100 Plus
Pvf1-RC 2783 CG7103-RC 327..1212 16..901 4430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18840630..18841120 411..901 2455 100 Plus
X 23542271 X 18838054..18838342 16..304 1445 100 Plus
X 23542271 X 18842218..18842310 902..994 465 100 Plus
X 23542271 X 18840381..18840460 304..383 400 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:23:33 has no hits.

BS08151.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:12 Download gff for BS08151.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 1..978 17..994 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:17 Download gff for BS08151.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 299..1283 9..994 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:17 Download gff for BS08151.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 328..1304 17..993 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:12 Download gff for BS08151.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 299..1283 9..994 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:41 Download gff for BS08151.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 328..1304 17..993 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:41 Download gff for BS08151.complete
Subject Subject Range Query Range Percent Splice Strand
X 18838055..18838342 17..304 100 -> Plus
X 18840382..18840460 305..383 100 -> Plus
X 18840532..18840558 384..410 100 -> Plus
X 18840630..18841120 411..901 100 -> Plus
X 18842218..18842309 902..993 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:17 Download gff for BS08151.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18732088..18732375 17..304 100 -> Plus
arm_X 18734415..18734493 305..383 100 -> Plus
arm_X 18734565..18734591 384..410 100 -> Plus
arm_X 18734663..18735153 411..901 100 -> Plus
arm_X 18736251..18736342 902..993 100   Plus

BS08151.pep Sequence

Translation from 16 to 993

> BS08151.pep
MAMSRIRILKPMQHPLLILPVLLLVLIVSEAAAGSLVSPNNRQPSQRFFY
AAATSSSSTQTKVRLLRQADDPSAAPGALEGSCCQGAAAEAGTPLTLPLS
VSAELTNVTADYDVSGEMPSSKENFKRSIMKSTVRNATPASCSPQPTIVE
LKPPAEDEANYYYMPACTRISRCNGCCGSTLISCQPTEVEQVQLRVRKVD
RAATSGRRPFTIITVEQHTQCRCDCRTKAEDCNVYQSYRKDLCRCECHNT
DARDKCLEQAENKYWVDDNCTCVCRYNQSCTTGTVFDETQCKCTDPAAPI
DVLDRKRFIVQAVQVDPDNTTLYSV*

BS08151.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf1-PA 325 CG7103-PA 1..325 1..325 1722 100 Plus
Pvf1-PB 314 CG7103-PB 1..314 12..325 1670 100 Plus
Pvf1-PC 300 CG7103-PC 1..295 1..295 1571 100 Plus