Clone BS08156 Report

Search the DGRC for BS08156

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:81
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptUev1A-RA
Protein status:BS08156.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08156.5prime Sequence

468 bp (467 high quality bases) assembled on 2006-01-06

> BS08156.5prime
GAAGTTATCAGTCGACATGGCGAATACATCAAGTACCGGCGTTGTGGTGC
CACGGAATTTCCGCTTACTGGAGGAGCTGGATCAGGGCCAGAAGGGCGTG
GGCGATGGCACCATATCGTGGGGCCTGGAGAACGACGACGACATGACGCT
CACCTACTGGATCGGCATGATCATCGGTCCGCCTAGAACACCATTCGAGA
ATCGAATGTATTCACTAAAGATCGAGTGCGGCGAACGCTATCCGGATGAG
CCACCAACGCTCCGGTTTATAACTAAAGTAAACATTAACTGCATTAATCA
GAACAATGGCGTGGTTGATCATAGATCAGTTCAGATGTTGGCCAGATGGA
GTCGCGAGTACAATATAAAAACGATGCTGCAGGAAATCCGTAGGATTATG
ACCATGAAAGAGAACCTGAAGCTGGCACAGCCGCCAGAAGGTAGCTGTTT
TTAGAAGCTTTCTAGACC

BS08156.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG10640-PA 438 Uev1A-RA 1..438 17..454 2190 100 Plus
CG10640-PB 312 Uev1A-RB 1..312 143..454 1560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
Uev1A-RC 1189 CG10640-RC 27..464 17..454 2190 100 Plus
Uev1A-RA 1196 CG10640-RA 70..507 17..454 2190 100 Plus
Uev1A-RB 1609 CG10640-RB 207..618 43..454 2060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5364943..5365086 187..44 720 100 Minus
3L 28110227 3L 5363875..5364016 454..313 710 100 Minus
3L 28110227 3L 5364082..5364209 315..188 640 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:21:10 has no hits.

BS08156.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:22 Download gff for BS08156.5prime
Subject Subject Range Query Range Percent Splice Strand
Uev1A-PA 1..438 17..454 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:56 Download gff for BS08156.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10640-PA 1..438 17..454 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:29:14 Download gff for BS08156.5prime
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 66..507 9..454 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:51:19 Download gff for BS08156.5prime
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 66..507 9..454 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:51:19 Download gff for BS08156.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5363875..5364015 314..454 100 <- Minus
3L 5364084..5364209 188..313 100 <- Minus
3L 5364943..5365085 45..187 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:29:14 Download gff for BS08156.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5356975..5357115 314..454 100 <- Minus
arm_3L 5357184..5357309 188..313 100 <- Minus
arm_3L 5358043..5358185 45..187 100 <- Minus

BS08156.3prime Sequence

468 bp (467 high quality bases) assembled on 2006-01-06

> BS08156.3prime
ATGGTCTAGAAAGCTTCTAAAAACAGCTACCTTCTGGCGGCTGTGCCAGC
TTCAGGTTCTCTTTCATGGTCATAATCCTACGGATTTCCTGCAGCATCGT
TTTTATATTGTACTCGCGACTCCATCTGGCCAACATCTGAACTGATCTAT
GATCAACCACGCCATTGTTCTGATTAATGCAGTTAATGTTTACTTTAGTT
ATAAACCGGAGCGTTGGTGGCTCATCCGGATAGCGTTCGCCGCACTCGAT
CTTTAGTGAATACATTCGATTCTCGAATGGTGTTCTAGGCGGACCGATGA
TCATGCCGATCCAGTAGGTGAGCGTCATGTCGTCGTCGTTCTCCAGGCCC
CACGATATGGTGCCATCGCCCACGCCCTTCTGGCCCTGATCCAGCTCCTC
CAGTAAGCGGAAATTCCGTGGCACCACAACGCCGGTACTTGATGTATTCG
CCATGTCGACTGATAACT

BS08156.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG10640-PA 438 Uev1A-RA 1..438 454..17 2190 100 Minus
CG10640-PB 312 Uev1A-RB 1..312 328..17 1560 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
Uev1A-RC 1189 CG10640-RC 27..464 454..17 2190 100 Minus
Uev1A-RA 1196 CG10640-RA 70..507 454..17 2190 100 Minus
Uev1A-RB 1609 CG10640-RB 207..618 428..17 2060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5364943..5365086 284..427 720 100 Plus
3L 28110227 3L 5363875..5364016 17..158 710 100 Plus
3L 28110227 3L 5364082..5364209 156..283 640 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:05:41 has no hits.

BS08156.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:20 Download gff for BS08156.3prime
Subject Subject Range Query Range Percent Splice Strand
Uev1A-PA 1..438 17..454 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:54 Download gff for BS08156.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10640-PA 1..438 17..454 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:27:56 Download gff for BS08156.3prime
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 66..507 17..462 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:49:06 Download gff for BS08156.3prime
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 66..507 17..462 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:49:06 Download gff for BS08156.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5364943..5365085 284..426 100 <- Plus
3L 5363875..5364015 17..157 100 <- Plus
3L 5364084..5364209 158..283 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:27:56 Download gff for BS08156.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5356975..5357115 17..157 100 <- Plus
arm_3L 5357184..5357309 158..283 100 <- Plus
arm_3L 5358043..5358185 284..426 100 <- Plus

BS08156.complete Sequence

470 bp (470 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636115

> BS08156.complete
GAAGTTATCAGTCGACATGGCGAATACATCAAGTACCGGCGTTGTGGTGC
CACGGAATTTCCGCTTACTGGAGGAGCTGGATCAGGGCCAGAAGGGCGTG
GGCGATGGCACCATATCGTGGGGCCTGGAGAACGACGACGACATGACGCT
CACCTACTGGATCGGCATGATCATCGGTCCGCCTAGAACACCATTCGAGA
ATCGAATGTATTCACTAAAGATCGAGTGCGGCGAACGCTATCCGGATGAG
CCACCAACGCTCCGGTTTATAACTAAAGTAAACATTAACTGCATTAATCA
GAACAATGGCGTGGTTGATCATAGATCAGTTCAGATGTTGGCCAGATGGA
GTCGCGAGTACAATATAAAAACGATGCTGCAGGAAATCCGTAGGATTATG
ACCATGAAAGAGAACCTGAAGCTGGCACAGCCGCCAGAAGGTAGCTGTTT
TTAGAAGCTTTCTAGACCAT

BS08156.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
Uev1A-RC 438 CG10640-PC 1..438 17..454 2190 100 Plus
Uev1A-RA 438 CG10640-PA 1..438 17..454 2190 100 Plus
Uev1A-RB 312 CG10640-PB 1..312 143..454 1560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
Uev1A-RC 1189 CG10640-RC 27..464 17..454 2190 100 Plus
Uev1A-RA 1196 CG10640-RA 70..507 17..454 2190 100 Plus
Uev1A-RB 1609 CG10640-RB 207..618 43..454 2060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5364943..5365086 187..44 720 100 Minus
3L 28110227 3L 5363875..5364016 454..313 710 100 Minus
3L 28110227 3L 5364082..5364209 315..188 640 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:16:45 has no hits.

BS08156.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:13 Download gff for BS08156.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 1..438 17..454 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:18 Download gff for BS08156.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 66..507 9..454 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:59 Download gff for BS08156.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 70..507 17..454 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:13 Download gff for BS08156.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 66..507 9..454 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:32 Download gff for BS08156.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 70..507 17..454 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:32 Download gff for BS08156.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5363875..5364015 314..454 100 <- Minus
3L 5364084..5364209 188..313 100 <- Minus
3L 5364943..5365085 45..187 100 <- Minus
3L 5366129..5366156 17..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:59 Download gff for BS08156.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5356975..5357115 314..454 100 <- Minus
arm_3L 5357184..5357309 188..313 100 <- Minus
arm_3L 5358043..5358185 45..187 100 <- Minus
arm_3L 5359229..5359256 17..44 100   Minus

BS08156.pep Sequence

Translation from 16 to 453

> BS08156.pep
MANTSSTGVVVPRNFRLLEELDQGQKGVGDGTISWGLENDDDMTLTYWIG
MIIGPPRTPFENRMYSLKIECGERYPDEPPTLRFITKVNINCINQNNGVV
DHRSVQMLARWSREYNIKTMLQEIRRIMTMKENLKLAQPPEGSCF*

BS08156.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
Uev1A-PC 145 CG10640-PC 1..145 1..145 777 100 Plus
Uev1A-PA 145 CG10640-PA 1..145 1..145 777 100 Plus
Uev1A-PB 103 CG10640-PB 1..103 43..145 557 100 Plus
Ubc6-PC 151 CG2013-PC 30..114 42..129 140 33.7 Plus
Ubc6-PA 151 CG2013-PA 30..114 42..129 140 33.7 Plus