Clone Sequence Records
BS08157.3prime Sequence
615 bp (614 high quality bases) assembled on 2006-01-06
> BS08157.3prime
ATGGTCTAGAAAGCTTTCACACATTGCTGTCCGTGCCCACGGCACCGGTG
AAGGAGAAGGGCTGGGCGTTGTTCACAATCCCCGCTCGATCGTTGGTTTG
GGCAGGTGTGTTTCCTCCGAAGGTTTGCTGAGCAGCTGCCCGCATGTCCT
CGGCGGATGCTTTCTTGCCTAACGCCATCATGCCGTAAACCACGCCAGTG
CCAAAGATCAGCCCACTGCCGAATAAGCTGGCCAGTCCAAAGCACAGAAT
AATGGGCGGAATGGCCATGGCAATGTAGAGCCCGGCACGGAAGTACAAGG
GCTTAGATTCCACCTTTTCCGCGATCTCGTTCACCTGCCCAAAGCAGACG
AAACAGCAGGGAGCCTCCAAGAGCATCACCACAAATCCTGCCACCATTTG
AAGGATGCCAGCCACCAGGCAGGATACGCTGAGCGTGATGATGGAGAACA
CATTCCACAGGCCGAAAAGAATGGCAAAGAAGGCGGCCACAATGCCCAGC
AATCGACTTCCATATTTGAGATACCACGGCTGCTCCGGTCCAATTGGATC
TTGTTGATTCGGCCGTGCCAGCAGACCCGTTATCTTTTCCGCAAACGACA
TGTCGACTGATAACT
BS08157.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6151-PA | 585 | CG6151-RA | 1..585 | 601..17 | 2925 | 100 | Minus |
CG6151-PB | 579 | CG6151-RB | 1..443 | 601..159 | 2215 | 100 | Minus |
CG6151-PC | 474 | CG6151-RC | 1..440 | 601..162 | 2200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fwe-RA | 1342 | CG6151-RA | 134..719 | 602..17 | 2930 | 100 | Minus |
fwe-RB | 3020 | CG6151-RB | 134..593 | 602..143 | 2225 | 99.1 | Minus |
fwe-RC | 2364 | CG6151-RC | 134..574 | 602..162 | 2205 | 100 | Minus |
fwe-RB | 3020 | CG6151-RB | 2253..2397 | 161..17 | 725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:41:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15813419..15813626 | 270..477 | 1040 | 100 | Plus |
3L | 28110227 | 3L | 15810704..15810848 | 17..161 | 725 | 100 | Plus |
3L | 28110227 | 3L | 15815936..15816057 | 478..599 | 610 | 100 | Plus |
3L | 28110227 | 3L | 15813246..15813353 | 162..269 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 15:41:47 has no hits.
BS08157.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:23 Download gff for
BS08157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6151-PA | 1..585 | 17..601 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:57 Download gff for
BS08157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6151-PA | 1..585 | 17..601 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:16:45 Download gff for
BS08157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fwe-RA | 125..719 | 17..611 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:06 Download gff for
BS08157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fwe-RA | 125..719 | 17..611 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:06 Download gff for
BS08157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15810704..15810848 | 17..161 | 100 | <- | Plus |
3L | 15813246..15813353 | 162..269 | 100 | <- | Plus |
3L | 15813419..15813626 | 270..477 | 100 | <- | Plus |
3L | 15815936..15816059 | 478..602 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:16:45 Download gff for
BS08157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15803804..15803948 | 17..161 | 100 | <- | Plus |
arm_3L | 15806346..15806453 | 162..269 | 100 | <- | Plus |
arm_3L | 15806519..15806726 | 270..477 | 100 | <- | Plus |
arm_3L | 15809036..15809159 | 478..602 | 99 | | Plus |
BS08157.5prime Sequence
615 bp (614 high quality bases) assembled on 2006-01-06
> BS08157.5prime
GAAGTTATCAGTCGACATGTCGTTTGCGGAAAAGATAACGGGTCTGCTGG
CACGGCCGAATCAACAAGATCCAATTGGACCGGAGCAGCCGTGGTATCTC
AAATATGGAAGTCGATTGCTGGGCATTGTGGCCGCCTTCTTTGCCATTCT
TTTCGGCCTGTGGAATGTGTTCTCCATCATCACGCTCAGCGTATCCTGCC
TGGTGGCTGGCATCCTTCAAATGGTGGCAGGATTTGTGGTGATGCTCTTG
GAGGCTCCCTGCTGTTTCGTCTGCTTTGGGCAGGTGAACGAGATCGCGGA
AAAGGTGGAATCTAAGCCCTTGTACTTCCGTGCCGGGCTCTACATTGCCA
TGGCCATTCCGCCCATTATTCTGTGCTTTGGACTGGCCAGCTTATTCGGC
AGTGGGCTGATCTTTGGCACTGGCGTGGTTTACGGCATGATGGCGTTAGG
CAAGAAAGCATCCGCCGAGGACATGCGGGCAGCTGCTCAGCAAACCTTCG
GAGGAAACACACCTGCCCAAACCAACGATCGAGCGGGGATTGTGAACAAC
GCCCAGCCCTTCTCCTTCACCGGTGCCGTGGGCACGGACAGCAATGTGTG
AAAGCTTTCTAGACC
BS08157.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6151-PA | 585 | CG6151-RA | 1..585 | 17..601 | 2925 | 100 | Plus |
CG6151-PB | 579 | CG6151-RB | 1..443 | 17..459 | 2215 | 100 | Plus |
CG6151-PC | 474 | CG6151-RC | 1..440 | 17..456 | 2200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:53:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fwe-RA | 1342 | CG6151-RA | 134..719 | 16..601 | 2930 | 100 | Plus |
fwe-RB | 3020 | CG6151-RB | 134..593 | 16..475 | 2225 | 99.1 | Plus |
fwe-RC | 2364 | CG6151-RC | 134..574 | 16..456 | 2205 | 100 | Plus |
fwe-RB | 3020 | CG6151-RB | 2253..2397 | 457..601 | 725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:53:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15813419..15813626 | 348..141 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 15810704..15810848 | 601..457 | 725 | 100 | Minus |
3L | 28110227 | 3L | 15815936..15816057 | 140..19 | 610 | 100 | Minus |
3L | 28110227 | 3L | 15813246..15813353 | 456..349 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:53:05 has no hits.
BS08157.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:24 Download gff for
BS08157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6151-PA | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:59 Download gff for
BS08157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6151-PA | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:22:13 Download gff for
BS08157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fwe-RA | 125..719 | 7..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:33:39 Download gff for
BS08157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fwe-RA | 125..719 | 7..601 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:33:39 Download gff for
BS08157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15810704..15810848 | 457..601 | 100 | <- | Minus |
3L | 15813246..15813353 | 349..456 | 100 | <- | Minus |
3L | 15813419..15813626 | 141..348 | 100 | <- | Minus |
3L | 15815936..15816059 | 16..140 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:22:13 Download gff for
BS08157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15803804..15803948 | 457..601 | 100 | <- | Minus |
arm_3L | 15806346..15806453 | 349..456 | 100 | <- | Minus |
arm_3L | 15806519..15806726 | 141..348 | 100 | <- | Minus |
arm_3L | 15809036..15809159 | 16..140 | 99 | | Minus |
BS08157.complete Sequence
617 bp (617 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636116
> BS08157.complete
GAAGTTATCAGTCGACATGTCGTTTGCGGAAAAGATAACGGGTCTGCTGG
CACGGCCGAATCAACAAGATCCAATTGGACCGGAGCAGCCGTGGTATCTC
AAATATGGAAGTCGATTGCTGGGCATTGTGGCCGCCTTCTTTGCCATTCT
TTTCGGCCTGTGGAATGTGTTCTCCATCATCACGCTCAGCGTATCCTGCC
TGGTGGCTGGCATCCTTCAAATGGTGGCAGGATTTGTGGTGATGCTCTTG
GAGGCTCCCTGCTGTTTCGTCTGCTTTGGGCAGGTGAACGAGATCGCGGA
AAAGGTGGAATCTAAGCCCTTGTACTTCCGTGCCGGGCTCTACATTGCCA
TGGCCATTCCGCCCATTATTCTGTGCTTTGGACTGGCCAGCTTATTCGGC
AGTGGGCTGATCTTTGGCACTGGCGTGGTTTACGGCATGATGGCGTTAGG
CAAGAAAGCATCCGCCGAGGACATGCGGGCAGCTGCTCAGCAAACCTTCG
GAGGAAACACACCTGCCCAAACCAACGATCGAGCGGGGATTGTGAACAAC
GCCCAGCCCTTCTCCTTCACCGGTGCCGTGGGCACGGACAGCAATGTGTG
AAAGCTTTCTAGACCAT
BS08157.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:08:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fwe-RA | 585 | CG6151-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
fwe-RB | 579 | CG6151-PB | 1..459 | 17..475 | 2220 | 98.9 | Plus |
fwe-RC | 474 | CG6151-PC | 1..440 | 17..456 | 2200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fwe-RA | 1342 | CG6151-RA | 134..719 | 16..601 | 2930 | 100 | Plus |
fwe-RB | 3020 | CG6151-RB | 134..593 | 16..475 | 2225 | 98.9 | Plus |
fwe-RC | 2364 | CG6151-RC | 134..574 | 16..456 | 2205 | 100 | Plus |
fwe-RB | 3020 | CG6151-RB | 2253..2397 | 457..601 | 725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:08:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15813419..15813626 | 348..141 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 15810704..15810848 | 601..457 | 725 | 100 | Minus |
3L | 28110227 | 3L | 15815936..15816057 | 140..19 | 610 | 100 | Minus |
3L | 28110227 | 3L | 15813246..15813353 | 456..349 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:08:17 has no hits.
BS08157.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:14 Download gff for
BS08157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6151-RA | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:20 Download gff for
BS08157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6151-RA | 124..718 | 7..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:28 Download gff for
BS08157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fwe-RA | 135..718 | 17..600 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:14 Download gff for
BS08157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6151-RA | 124..718 | 7..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:57 Download gff for
BS08157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fwe-RA | 135..718 | 17..600 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:57 Download gff for
BS08157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15810705..15810848 | 457..600 | 100 | <- | Minus |
3L | 15813246..15813353 | 349..456 | 100 | <- | Minus |
3L | 15813419..15813626 | 141..348 | 100 | <- | Minus |
3L | 15815936..15816058 | 17..140 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:28 Download gff for
BS08157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15803805..15803948 | 457..600 | 100 | <- | Minus |
arm_3L | 15806346..15806453 | 349..456 | 100 | <- | Minus |
arm_3L | 15806519..15806726 | 141..348 | 100 | <- | Minus |
arm_3L | 15809036..15809158 | 17..140 | 99 | | Minus |
BS08157.pep Sequence
Translation from 16 to 600
> BS08157.pep
MSFAEKITGLLARPNQQDPIGPEQPWYLKYGSRLLGIVAAFFAILFGLWN
VFSIITLSVSCLVAGILQMVAGFVVMLLEAPCCFVCFGQVNEIAEKVESK
PLYFRAGLYIAMAIPPIILCFGLASLFGSGLIFGTGVVYGMMALGKKASA
EDMRAAAQQTFGGNTPAQTNDRAGIVNNAQPFSFTGAVGTDSNV*
BS08157.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fwe-PA | 194 | CG6151-PA | 1..194 | 1..194 | 998 | 100 | Plus |
fwe-PB | 192 | CG6151-PB | 1..157 | 1..157 | 793 | 98.7 | Plus |
fwe-PC | 157 | CG6151-PC | 1..146 | 1..146 | 754 | 100 | Plus |