Clone BS08158 Report

Search the DGRC for BS08158

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:81
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptSep5-RA
Protein status:BS08158.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08158.3prime Sequence

801 bp (799 high quality bases) assembled on 2006-01-06

> BS08158.3prime
ATGGTCTAGAAAGCTTCTACTTTTTCTTGCCCCTGCCCAAGGTGAGAGTG
TGCGAACCATTGGCCATCTGGAGCCTACGACGCTGTAGCTCCTGGCAATC
CTCTTCCAGCTGCCGACGGGCCTCTTCCAGTTGGGCCTTTTCCTCCAAAT
GCTCCCGTTTTAGCCGGTCGAACTTAGTATGCAATTCCTTCTCGTTGTCC
TTCAGCTCGTTCTCCTTCTGCTTGACCCGCTGAACGAACATTTGGCGCAC
TTCCTCCTCCTTGGCCTGTAGGCAAGCCAGATGGTCGGATCGCTTCGACT
CGAAGGTCTGTTGGAAGGAGACCGGCTGGTTGTTGCTGTCCACGTCCACA
AAGCCCATTTGTTGTAGGCGCCGCTGGCGGAAGAGCTCATAGTGGCGTGT
GTGAGTCTGTTCGCGCAGATCCTCCATGTTAGTGCGAATGAGCATCTCGC
GCAGCTTCACAAAGTCGCAGTGCGCCTCGTTTTCTATGTGCACCGCTCCC
CATGGATATTGGCGGGCACGAACCTGCTTTCCGGCCACCTTTACAAACTC
CGTACTGCCAACAACGGCAAAGGGTAGATGGCCGTTCATCGCAGCATTTG
TTTCGGACACGGTTTCGTCGTCCATGGGAAACTGGTATATGCTCACATTG
TTCCGCCGTAGTTCGTCCATTATGCGTTCCTTAAACCCCGACAGCTCCGA
CTTGGAGATGGTGTCGGCCTTCGCGATCACGGGAATGATGTTCACCCTAG
TGTCAAGCTGCTTCATGCACACCAAATCCATAGCTTTCAGACCATGGCCC
G

BS08158.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2916-PA 1269 Sep5-RA 485..1269 801..17 3925 100 Minus
CG2916-PB 1269 Sep5-RB 485..1269 801..17 3925 100 Minus
CG4173-PA 1260 Sep2-RA 796..893 481..384 315 92.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
Sep5-RB 1729 CG2916-RB 697..1481 801..17 3925 100 Minus
Sep5-RA 1704 CG2916-RA 757..1541 801..17 3925 100 Minus
Sep2-RB 1688 CG4173-RB 714..1473 774..15 865 75.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7960381..7961165 17..801 3925 100 Plus
3R 32079331 3R 20586344..20587103 15..774 860 74.2 Plus
Blast to na_te.dros performed on 2015-02-12 04:25:52 has no hits.

BS08158.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:25 Download gff for BS08158.3prime
Subject Subject Range Query Range Percent Splice Strand
Sep5-PA 485..1269 17..801 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:33:00 Download gff for BS08158.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2916-PB 485..1269 17..801 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:45:54 Download gff for BS08158.3prime
Subject Subject Range Query Range Percent Splice Strand
Sep5-RA 757..1552 5..801 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:15 Download gff for BS08158.3prime
Subject Subject Range Query Range Percent Splice Strand
Sep5-RA 757..1552 5..801 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:15 Download gff for BS08158.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7960370..7961165 5..801 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:45:54 Download gff for BS08158.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3847875..3848670 5..801 99   Plus

BS08158.5prime Sequence

936 bp (863 high quality bases) assembled on 2006-01-06

> BS08158.5prime
GAAGTTATCAGTCGACATGGTTCATTTAGTGACTGAAAAGAAGACGCAGG
AGGTGGCAACCAAAGTCCCCAGGCTCCTTCAACTCGGCGGCCACGTGGGG
TTCGACACCCTACCGGACCAGCTGGTCAACAAGAGCGTCCAGAATGGCTT
TAGCTTCAATATCCTATGCATCGGCGAGACCGCTCTCGGGAAATCCACTC
TCATGGACACACTGTTCAATACCAGTTTTGGATCTACACCGAGCCCGCAC
AACCTGCCCAATGTGAAGCTGAAGGCAAATACATACGAGCTGCAGGAGAG
CAACGTCCGCCTGAAGCTGACCGTCTGTGACACGATCGGATACGGAGATC
AGGTTAATAAAGCGGACAGCTACAAGGCTTTGGTGGAGTACGTGGACAGC
CAGTTTGAAGCGTATTTGCAGGAAGAGCTCAAGATCCAGCGAGCGATGGC
CAGTGCTCATGATGGACGCGTTCACGCCTGCCTGTACTTCATCTGTCCCA
CGGGCCATGGTCTGAAAGCTATGGATTTGGTGTGCATGAAGCAGCTTGAC
ACTAGGGTGAACATCATTCCCGTGATCGCGAAGGCCGACACCATCTCCAA
GTCGGAGCTGTCGGGGTTTAAGGAACGCATAATGGACGAACTACGGCGGA
ACAATGTGAGCATATACCAGTTTCCCATGGACGACGAAACCGTGTCCGAA
ACAAATGCTGCGATGAACGGCCATCTACCCTTTGCCGTTGTTGGCAGTAC
GGAGTTTGTAAAGGTGGCCGGAAAGCAGGTTCGTGCCCGCCAATATCCAT
GGGGAGCGGTGCACATAGAAAACGAGGCGCACTGCGACTTTGTGAAGCTG
CGCGAGATGCTCATTCGCACTAACATGGAGGATCTGCGCGAACAGACTCA
CACACGCCACTATGAGCTCTTCCGCCAGCGGCGCCT

BS08158.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2916-PA 1269 Sep5-RA 1..920 17..936 4600 100 Plus
CG2916-PB 1269 Sep5-RB 1..920 17..936 4600 100 Plus
CG4173-PA 1260 Sep2-RA 796..893 821..918 315 92.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
Sep5-RB 1729 CG2916-RB 209..1132 13..936 4605 99.9 Plus
Sep5-RA 1704 CG2916-RA 269..1192 13..936 4605 99.9 Plus
Sep2-RA 1562 CG4173-RA 148..988 88..928 970 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7960730..7961653 936..13 4605 99.9 Minus
3R 32079331 3R 20586703..20587458 928..173 795 73.7 Minus
Blast to na_te.dros performed on 2015-02-04 01:32:51 has no hits.

BS08158.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:26 Download gff for BS08158.5prime
Subject Subject Range Query Range Percent Splice Strand
Sep5-PA 1..920 17..936 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:33:02 Download gff for BS08158.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2916-PB 1..920 17..936 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:42:02 Download gff for BS08158.5prime
Subject Subject Range Query Range Percent Splice Strand
Sep5-RA 269..1192 13..936 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:17 Download gff for BS08158.5prime
Subject Subject Range Query Range Percent Splice Strand
Sep5-RA 269..1192 13..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:17 Download gff for BS08158.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7960730..7961653 13..936 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:42:02 Download gff for BS08158.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3848235..3849158 13..936 99   Minus

BS08158.complete Sequence

1301 bp (1301 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636117

> BS08158.complete
GAAGTTATCAGTCGACATGGTTCATTTAGTGACTGAAAAGAAGACGCAGG
AGGTGGCAACCAAAGTCCCCAGGCTCCTTCAACTCGGCGGCCACGTGGGG
TTCGACACCCTACCGGACCAGCTGGTCAACAAGAGCGTCCAGAATGGCTT
TAGCTTCAATATCCTATGCATCGGCGAGACCGCTCTCGGGAAATCCACTC
TCATGGACACACTGTTCAATACCAGTTTTGGATCTACACCGAGCCCGCAC
AACCTGCCCAATGTGAAGCTGAAGGCAAATACATACGAGCTGCAGGAGAG
CAACGTCCGCCTGAAGCTGACCGTCTGTGACACGATCGGATACGGAGATC
AGGTTAATAAAGCGGACAGCTACAAGGCTTTGGTGGAGTACGTGGACAGC
CAGTTTGAAGCGTATTTGCAGGAAGAGCTCAAGATCCAGCGAGCGATGGC
CAGTGCTCATGATGGACGCGTTCACGCCTGCCTGTACTTCATCTGTCCCA
CGGGCCATGGTCTGAAAGCTATGGATTTGGTGTGCATGAAGCAGCTTGAC
ACTAGGGTGAACATCATTCCCGTGATCGCGAAGGCCGACACCATCTCCAA
GTCGGAGCTGTCGGGGTTTAAGGAACGCATAATGGACGAACTACGGCGGA
ACAATGTGAGCATATACCAGTTTCCCATGGACGACGAAACCGTGTCCGAA
ACAAATGCTGCGATGAACGGCCATCTACCCTTTGCCGTTGTTGGCAGTAC
GGAGTTTGTAAAGGTGGCCGGAAAGCAGGTTCGTGCCCGCCAATATCCAT
GGGGAGCGGTGCACATAGAAAACGAGGCGCACTGCGACTTTGTGAAGCTG
CGCGAGATGCTCATTCGCACTAACATGGAGGATCTGCGCGAACAGACTCA
CACACGCCACTATGAGCTCTTCCGCCAGCGGCGCCTACAACAAATGGGCT
TTGTGGACGTGGACAGCAACAACCAGCCGGTCTCCTTCCAACAGACCTTC
GAGTCGAAGCGATCCGACCATCTGGCTTGCCTACAGGCCAAGGAGGAGGA
AGTGCGCCAAATGTTCGTTCAGCGGGTCAAGCAGAAGGAGAACGAGCTGA
AGGACAACGAGAAGGAATTGCATACTAAGTTCGACCGGCTAAAACGGGAG
CATTTGGAGGAAAAGGCCCAACTGGAAGAGGCCCGTCGGCAGCTGGAAGA
GGATTGCCAGGAGCTACAGCGTCGTAGGCTCCAGATGGCCAATGGTTCGC
ACACTCTCACCTTGGGCAGGGGCAAGAAAAAGTAGAAGCTTTCTAGACCA
T

BS08158.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
Sep5-RB 1269 CG2916-PB 1..1269 17..1285 6345 100 Plus
Sep5-RA 1269 CG2916-PA 1..1269 17..1285 6345 100 Plus
Sep2-RA 1260 CG4173-PA 63..1155 88..1180 1295 74.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
Sep5-RB 1729 CG2916-RB 209..1481 13..1285 6350 99.9 Plus
Sep5-RA 1704 CG2916-RA 269..1541 13..1285 6350 99.9 Plus
Sep2-RA 1562 CG4173-RA 148..1347 88..1287 1305 73.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7960381..7961653 1285..13 6350 99.9 Minus
3R 32079331 3R 20586344..20587458 1287..173 1150 73.5 Minus
Blast to na_te.dros performed on 2014-11-27 13:14:52 has no hits.

BS08158.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:58 Download gff for BS08158.complete
Subject Subject Range Query Range Percent Splice Strand
Sep5-RB 1..1269 17..1285 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:02 Download gff for BS08158.complete
Subject Subject Range Query Range Percent Splice Strand
Sep5-RB 210..1493 13..1297 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:14:20 Download gff for BS08158.complete
Subject Subject Range Query Range Percent Splice Strand
Sep5-RA 273..1541 17..1285 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:58 Download gff for BS08158.complete
Subject Subject Range Query Range Percent Splice Strand
Sep5-RB 210..1493 13..1297 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:06 Download gff for BS08158.complete
Subject Subject Range Query Range Percent Splice Strand
Sep5-RA 273..1541 17..1285 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:06 Download gff for BS08158.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7960381..7961649 17..1285 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:14:20 Download gff for BS08158.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3847886..3849154 17..1285 100   Minus

BS08158.pep Sequence

Translation from 16 to 1284

> BS08158.pep
MVHLVTEKKTQEVATKVPRLLQLGGHVGFDTLPDQLVNKSVQNGFSFNIL
CIGETALGKSTLMDTLFNTSFGSTPSPHNLPNVKLKANTYELQESNVRLK
LTVCDTIGYGDQVNKADSYKALVEYVDSQFEAYLQEELKIQRAMASAHDG
RVHACLYFICPTGHGLKAMDLVCMKQLDTRVNIIPVIAKADTISKSELSG
FKERIMDELRRNNVSIYQFPMDDETVSETNAAMNGHLPFAVVGSTEFVKV
AGKQVRARQYPWGAVHIENEAHCDFVKLREMLIRTNMEDLREQTHTRHYE
LFRQRRLQQMGFVDVDSNNQPVSFQQTFESKRSDHLACLQAKEEEVRQMF
VQRVKQKENELKDNEKELHTKFDRLKREHLEEKAQLEEARRQLEEDCQEL
QRRRLQMANGSHTLTLGRGKKK*

BS08158.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
Sep5-PB 422 CG2916-PB 1..422 1..422 2182 100 Plus
Sep5-PA 422 CG2916-PA 1..422 1..422 2182 100 Plus
Sep2-PA 419 CG4173-PA 16..419 19..422 1651 74.5 Plus
Sep2-PB 360 CG4173-PB 1..360 63..422 1463 73.9 Plus
pnut-PA 539 CG8705-PA 117..516 21..422 776 39.2 Plus