Clone Sequence Records
BS08158.3prime Sequence
801 bp (799 high quality bases) assembled on 2006-01-06
> BS08158.3prime
ATGGTCTAGAAAGCTTCTACTTTTTCTTGCCCCTGCCCAAGGTGAGAGTG
TGCGAACCATTGGCCATCTGGAGCCTACGACGCTGTAGCTCCTGGCAATC
CTCTTCCAGCTGCCGACGGGCCTCTTCCAGTTGGGCCTTTTCCTCCAAAT
GCTCCCGTTTTAGCCGGTCGAACTTAGTATGCAATTCCTTCTCGTTGTCC
TTCAGCTCGTTCTCCTTCTGCTTGACCCGCTGAACGAACATTTGGCGCAC
TTCCTCCTCCTTGGCCTGTAGGCAAGCCAGATGGTCGGATCGCTTCGACT
CGAAGGTCTGTTGGAAGGAGACCGGCTGGTTGTTGCTGTCCACGTCCACA
AAGCCCATTTGTTGTAGGCGCCGCTGGCGGAAGAGCTCATAGTGGCGTGT
GTGAGTCTGTTCGCGCAGATCCTCCATGTTAGTGCGAATGAGCATCTCGC
GCAGCTTCACAAAGTCGCAGTGCGCCTCGTTTTCTATGTGCACCGCTCCC
CATGGATATTGGCGGGCACGAACCTGCTTTCCGGCCACCTTTACAAACTC
CGTACTGCCAACAACGGCAAAGGGTAGATGGCCGTTCATCGCAGCATTTG
TTTCGGACACGGTTTCGTCGTCCATGGGAAACTGGTATATGCTCACATTG
TTCCGCCGTAGTTCGTCCATTATGCGTTCCTTAAACCCCGACAGCTCCGA
CTTGGAGATGGTGTCGGCCTTCGCGATCACGGGAATGATGTTCACCCTAG
TGTCAAGCTGCTTCATGCACACCAAATCCATAGCTTTCAGACCATGGCCC
G
BS08158.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2916-PA | 1269 | Sep5-RA | 485..1269 | 801..17 | 3925 | 100 | Minus |
CG2916-PB | 1269 | Sep5-RB | 485..1269 | 801..17 | 3925 | 100 | Minus |
CG4173-PA | 1260 | Sep2-RA | 796..893 | 481..384 | 315 | 92.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:25:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sep5-RB | 1729 | CG2916-RB | 697..1481 | 801..17 | 3925 | 100 | Minus |
Sep5-RA | 1704 | CG2916-RA | 757..1541 | 801..17 | 3925 | 100 | Minus |
Sep2-RB | 1688 | CG4173-RB | 714..1473 | 774..15 | 865 | 75.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:25:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7960381..7961165 | 17..801 | 3925 | 100 | Plus |
3R | 32079331 | 3R | 20586344..20587103 | 15..774 | 860 | 74.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:25:52 has no hits.
BS08158.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:25 Download gff for
BS08158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep5-PA | 485..1269 | 17..801 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:33:00 Download gff for
BS08158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2916-PB | 485..1269 | 17..801 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:45:54 Download gff for
BS08158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep5-RA | 757..1552 | 5..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:15 Download gff for
BS08158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep5-RA | 757..1552 | 5..801 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:15 Download gff for
BS08158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7960370..7961165 | 5..801 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:45:54 Download gff for
BS08158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3847875..3848670 | 5..801 | 99 | | Plus |
BS08158.5prime Sequence
936 bp (863 high quality bases) assembled on 2006-01-06
> BS08158.5prime
GAAGTTATCAGTCGACATGGTTCATTTAGTGACTGAAAAGAAGACGCAGG
AGGTGGCAACCAAAGTCCCCAGGCTCCTTCAACTCGGCGGCCACGTGGGG
TTCGACACCCTACCGGACCAGCTGGTCAACAAGAGCGTCCAGAATGGCTT
TAGCTTCAATATCCTATGCATCGGCGAGACCGCTCTCGGGAAATCCACTC
TCATGGACACACTGTTCAATACCAGTTTTGGATCTACACCGAGCCCGCAC
AACCTGCCCAATGTGAAGCTGAAGGCAAATACATACGAGCTGCAGGAGAG
CAACGTCCGCCTGAAGCTGACCGTCTGTGACACGATCGGATACGGAGATC
AGGTTAATAAAGCGGACAGCTACAAGGCTTTGGTGGAGTACGTGGACAGC
CAGTTTGAAGCGTATTTGCAGGAAGAGCTCAAGATCCAGCGAGCGATGGC
CAGTGCTCATGATGGACGCGTTCACGCCTGCCTGTACTTCATCTGTCCCA
CGGGCCATGGTCTGAAAGCTATGGATTTGGTGTGCATGAAGCAGCTTGAC
ACTAGGGTGAACATCATTCCCGTGATCGCGAAGGCCGACACCATCTCCAA
GTCGGAGCTGTCGGGGTTTAAGGAACGCATAATGGACGAACTACGGCGGA
ACAATGTGAGCATATACCAGTTTCCCATGGACGACGAAACCGTGTCCGAA
ACAAATGCTGCGATGAACGGCCATCTACCCTTTGCCGTTGTTGGCAGTAC
GGAGTTTGTAAAGGTGGCCGGAAAGCAGGTTCGTGCCCGCCAATATCCAT
GGGGAGCGGTGCACATAGAAAACGAGGCGCACTGCGACTTTGTGAAGCTG
CGCGAGATGCTCATTCGCACTAACATGGAGGATCTGCGCGAACAGACTCA
CACACGCCACTATGAGCTCTTCCGCCAGCGGCGCCT
BS08158.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2916-PA | 1269 | Sep5-RA | 1..920 | 17..936 | 4600 | 100 | Plus |
CG2916-PB | 1269 | Sep5-RB | 1..920 | 17..936 | 4600 | 100 | Plus |
CG4173-PA | 1260 | Sep2-RA | 796..893 | 821..918 | 315 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sep5-RB | 1729 | CG2916-RB | 209..1132 | 13..936 | 4605 | 99.9 | Plus |
Sep5-RA | 1704 | CG2916-RA | 269..1192 | 13..936 | 4605 | 99.9 | Plus |
Sep2-RA | 1562 | CG4173-RA | 148..988 | 88..928 | 970 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:32:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7960730..7961653 | 936..13 | 4605 | 99.9 | Minus |
3R | 32079331 | 3R | 20586703..20587458 | 928..173 | 795 | 73.7 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:32:51 has no hits.
BS08158.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:26 Download gff for
BS08158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep5-PA | 1..920 | 17..936 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:33:02 Download gff for
BS08158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2916-PB | 1..920 | 17..936 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:42:02 Download gff for
BS08158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep5-RA | 269..1192 | 13..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:17 Download gff for
BS08158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep5-RA | 269..1192 | 13..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:17 Download gff for
BS08158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7960730..7961653 | 13..936 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:42:02 Download gff for
BS08158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3848235..3849158 | 13..936 | 99 | | Minus |
BS08158.complete Sequence
1301 bp (1301 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636117
> BS08158.complete
GAAGTTATCAGTCGACATGGTTCATTTAGTGACTGAAAAGAAGACGCAGG
AGGTGGCAACCAAAGTCCCCAGGCTCCTTCAACTCGGCGGCCACGTGGGG
TTCGACACCCTACCGGACCAGCTGGTCAACAAGAGCGTCCAGAATGGCTT
TAGCTTCAATATCCTATGCATCGGCGAGACCGCTCTCGGGAAATCCACTC
TCATGGACACACTGTTCAATACCAGTTTTGGATCTACACCGAGCCCGCAC
AACCTGCCCAATGTGAAGCTGAAGGCAAATACATACGAGCTGCAGGAGAG
CAACGTCCGCCTGAAGCTGACCGTCTGTGACACGATCGGATACGGAGATC
AGGTTAATAAAGCGGACAGCTACAAGGCTTTGGTGGAGTACGTGGACAGC
CAGTTTGAAGCGTATTTGCAGGAAGAGCTCAAGATCCAGCGAGCGATGGC
CAGTGCTCATGATGGACGCGTTCACGCCTGCCTGTACTTCATCTGTCCCA
CGGGCCATGGTCTGAAAGCTATGGATTTGGTGTGCATGAAGCAGCTTGAC
ACTAGGGTGAACATCATTCCCGTGATCGCGAAGGCCGACACCATCTCCAA
GTCGGAGCTGTCGGGGTTTAAGGAACGCATAATGGACGAACTACGGCGGA
ACAATGTGAGCATATACCAGTTTCCCATGGACGACGAAACCGTGTCCGAA
ACAAATGCTGCGATGAACGGCCATCTACCCTTTGCCGTTGTTGGCAGTAC
GGAGTTTGTAAAGGTGGCCGGAAAGCAGGTTCGTGCCCGCCAATATCCAT
GGGGAGCGGTGCACATAGAAAACGAGGCGCACTGCGACTTTGTGAAGCTG
CGCGAGATGCTCATTCGCACTAACATGGAGGATCTGCGCGAACAGACTCA
CACACGCCACTATGAGCTCTTCCGCCAGCGGCGCCTACAACAAATGGGCT
TTGTGGACGTGGACAGCAACAACCAGCCGGTCTCCTTCCAACAGACCTTC
GAGTCGAAGCGATCCGACCATCTGGCTTGCCTACAGGCCAAGGAGGAGGA
AGTGCGCCAAATGTTCGTTCAGCGGGTCAAGCAGAAGGAGAACGAGCTGA
AGGACAACGAGAAGGAATTGCATACTAAGTTCGACCGGCTAAAACGGGAG
CATTTGGAGGAAAAGGCCCAACTGGAAGAGGCCCGTCGGCAGCTGGAAGA
GGATTGCCAGGAGCTACAGCGTCGTAGGCTCCAGATGGCCAATGGTTCGC
ACACTCTCACCTTGGGCAGGGGCAAGAAAAAGTAGAAGCTTTCTAGACCA
T
BS08158.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sep5-RB | 1269 | CG2916-PB | 1..1269 | 17..1285 | 6345 | 100 | Plus |
Sep5-RA | 1269 | CG2916-PA | 1..1269 | 17..1285 | 6345 | 100 | Plus |
Sep2-RA | 1260 | CG4173-PA | 63..1155 | 88..1180 | 1295 | 74.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sep5-RB | 1729 | CG2916-RB | 209..1481 | 13..1285 | 6350 | 99.9 | Plus |
Sep5-RA | 1704 | CG2916-RA | 269..1541 | 13..1285 | 6350 | 99.9 | Plus |
Sep2-RA | 1562 | CG4173-RA | 148..1347 | 88..1287 | 1305 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7960381..7961653 | 1285..13 | 6350 | 99.9 | Minus |
3R | 32079331 | 3R | 20586344..20587458 | 1287..173 | 1150 | 73.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:14:52 has no hits.
BS08158.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:58 Download gff for
BS08158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep5-RB | 1..1269 | 17..1285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:02 Download gff for
BS08158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep5-RB | 210..1493 | 13..1297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:14:20 Download gff for
BS08158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep5-RA | 273..1541 | 17..1285 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:58 Download gff for
BS08158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep5-RB | 210..1493 | 13..1297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:06 Download gff for
BS08158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep5-RA | 273..1541 | 17..1285 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:06 Download gff for
BS08158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7960381..7961649 | 17..1285 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:14:20 Download gff for
BS08158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3847886..3849154 | 17..1285 | 100 | | Minus |
BS08158.pep Sequence
Translation from 16 to 1284
> BS08158.pep
MVHLVTEKKTQEVATKVPRLLQLGGHVGFDTLPDQLVNKSVQNGFSFNIL
CIGETALGKSTLMDTLFNTSFGSTPSPHNLPNVKLKANTYELQESNVRLK
LTVCDTIGYGDQVNKADSYKALVEYVDSQFEAYLQEELKIQRAMASAHDG
RVHACLYFICPTGHGLKAMDLVCMKQLDTRVNIIPVIAKADTISKSELSG
FKERIMDELRRNNVSIYQFPMDDETVSETNAAMNGHLPFAVVGSTEFVKV
AGKQVRARQYPWGAVHIENEAHCDFVKLREMLIRTNMEDLREQTHTRHYE
LFRQRRLQQMGFVDVDSNNQPVSFQQTFESKRSDHLACLQAKEEEVRQMF
VQRVKQKENELKDNEKELHTKFDRLKREHLEEKAQLEEARRQLEEDCQEL
QRRRLQMANGSHTLTLGRGKKK*
BS08158.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sep5-PB | 422 | CG2916-PB | 1..422 | 1..422 | 2182 | 100 | Plus |
Sep5-PA | 422 | CG2916-PA | 1..422 | 1..422 | 2182 | 100 | Plus |
Sep2-PA | 419 | CG4173-PA | 16..419 | 19..422 | 1651 | 74.5 | Plus |
Sep2-PB | 360 | CG4173-PB | 1..360 | 63..422 | 1463 | 73.9 | Plus |
pnut-PA | 539 | CG8705-PA | 117..516 | 21..422 | 776 | 39.2 | Plus |