Clone BS08162 Report

Search the DGRC for BS08162

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:81
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptgny-RA
Protein status:BS08162.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08162.3prime Sequence

855 bp (803 high quality bases) assembled on 2006-01-06

> BS08162.3prime
ATGGTCTAGAAAGCTTCTAACTTAACTTGCTGCTAAATTGTTGAACATTT
CCCCACAAGAAAAACAAGAAGAAGTGTCCACAGCTTGTAACCGAAATAAT
AAGGGGCCAAAGATCTGGATACTTTGTAGGTGCCGGAACGGTCAGAGAAG
CAACCACAACACTGATCATCAGAATCTGCGATATATTTGCAATGTACTTC
AGTGGATATTCGTTGCTGAGCTTCGACTTTGAATCAAAACATTTGAATAT
CAAATGAAAAGCCACAGTGGCCACTACGGCGGGCACCAACAATTCATCTC
TTGCTAGAAGAGGCAACATGCTGAATACGGTAACTTCCAGAAATAAAATC
ATTTCGTCGGGCCAGCACTTAAGTAGGAAAAGTGCTGGTAAAGCAGTCAG
CAAAATGGTCTTCTCGTGCACTTGAAATGAAAACAAGAAGAATGCCAGGC
TCGTGTTGAAAAGCGCTAATAGAAATCCGACATTAGTTCGCCTTCGAAAG
AGTAGTACATTTGTTGGCAAAGATGCAATTAACGTGCATGCAATGCACAC
AAGGGCCATTTGGTCATTGCTGATATGCTTCTTTAGTTTCCAAACTACGT
TGACGGCACACCAAACATTGGCCACCTTGTCCTCAAAAACTCCTCGGGCG
ACAGGAAACAGGCGATGGAGTACTTGAAGTACGGCCTGCAGAGATCCCAA
CCAAGGAACCCATAAAATAGCAAATGTTCCTAAGACAACGGCTGCTATCC
GTGAGATTTCAGCGATAAAAGAAGCAAAGCTTTTTTGGCTTACACATTCA
CCCAGAAGGAACGCAAAGAACGGCAAGCTGTGATACAGCTCCATTTGCTT
ATAAT

BS08162.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5091-PA 1428 CG5091-RA 590..1428 855..17 4195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
gny-RB 1521 CG5091-RB 636..1474 855..17 4195 100 Minus
gny-RA 2557 CG5091-RA 636..1474 855..17 4195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10381377..10381781 421..17 2025 100 Minus
2L 23513712 2L 10380911..10381111 781..581 1005 100 Minus
2L 23513712 2L 10381163..10381324 581..420 810 100 Minus
2L 23513712 2L 10380738..10380813 855..780 380 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:39:44 has no hits.

BS08162.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:34 Download gff for BS08162.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5091-PA 590..1428 17..855 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:33:12 Download gff for BS08162.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5091-PA 590..1428 17..855 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:55:00 Download gff for BS08162.3prime
Subject Subject Range Query Range Percent Splice Strand
gny-RA 636..1480 7..855 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:30 Download gff for BS08162.3prime
Subject Subject Range Query Range Percent Splice Strand
gny-RA 636..1480 7..855 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:30 Download gff for BS08162.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10380738..10380813 780..855 100 -> Minus
2L 10380913..10381110 582..779 100 -> Minus
2L 10381163..10381322 422..581 100 -> Minus
2L 10381377..10381787 7..421 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:55:00 Download gff for BS08162.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10380738..10380813 780..855 100 -> Minus
arm_2L 10380913..10381110 582..779 100 -> Minus
arm_2L 10381163..10381322 422..581 100 -> Minus
arm_2L 10381377..10381787 7..421 99   Minus

BS08162.5prime Sequence

869 bp (834 high quality bases) assembled on 2006-01-06

> BS08162.5prime
GAAGTTATCAGTCGACATGAGATCCGAAATTTTGGCAAGCGCCTTTTTGG
GCCTGGCGGTTAGGTCGATTATCTCGCTGTACTCCTACTCCGGCTTCGAT
TCCCCGCCGATGCATGGCGACTACGAGGCCCAGCGCCACTGGCAAGAGAT
CACGGTCAATCTGGCAGTGGGGGAATGGTACACAAACAGCTCCAACAACG
ATCTTCAGTACTGGGGCCTGGATTATCCGCCTCTGACGGCCTACCACAGC
TATTTGGTGGGTCGCATAGGAGCATCCATTGACCCCCGCTTCGTCGAGCT
GCACAAGAGCAGGGGATTCGAGTCGAAGGAGCACAAACGCTTCATGCGCG
CAACAGTTGTTTCTGCTGACGTGCTCATCTATTTGCCGGCAATGTTGTTG
CTGGCCTATTCCCTAGATAAAGCCTTTCGAAGCGATGATAAATTGTTCCT
ATTCACGCTGGTGGCCGCGTATCCCGGACAAACACTCATCGACAATGGAC
ACTTTCAGTATAATAATATATCACTGGGCTTTGCCGCCGTGGCAATTGCC
GCAATCTTGCGAAGAAGATTCTACGCGGCTGCATTTTTCTTCACTTTAGC
CCTTAATTATAAGCAAATGGAGCTGTATCACAGCTTGCCGTTCTTTGCGT
TCCTTCTGGGTGAATGTGTAAGCCAAAAAAGCTTTGCTTCTTTTATCGCT
GAAATCTCACGGATAGCAGCCGTTGTCTTAGGAACATTTGCTATTTTATG
GGTTCCTTGGTTGGGATCTCTGCAGGCCGTACTTCAAGTACTCCATCGCC
TGTTTCCTGTCGCCCGAGGAGTTTTTGAGGACAAGGTGGCCAATGTTTGG
TGTGCCGTCAACGTAGTTT

BS08162.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5091-PA 1428 CG5091-RA 1..853 17..869 4265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
gny-RB 1521 CG5091-RB 47..899 17..869 4265 100 Plus
gny-RA 2557 CG5091-RA 47..899 17..869 4265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10380149..10380813 17..681 3325 100 Plus
2L 23513712 2L 10380911..10381100 680..869 950 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:03:14 has no hits.

BS08162.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:35 Download gff for BS08162.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5091-PA 1..853 17..869 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:33:13 Download gff for BS08162.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5091-PA 1..853 17..869 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:13:10 Download gff for BS08162.5prime
Subject Subject Range Query Range Percent Splice Strand
gny-RA 47..899 17..869 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:44:01 Download gff for BS08162.5prime
Subject Subject Range Query Range Percent Splice Strand
gny-RA 47..899 17..869 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:44:01 Download gff for BS08162.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10380149..10380813 17..681 100 -> Plus
2L 10380913..10381100 682..869 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:13:10 Download gff for BS08162.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10380149..10380813 17..681 100 -> Plus
arm_2L 10380913..10381100 682..869 100   Plus

BS08162.complete Sequence

1460 bp (1460 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636118

> BS08162.complete
GAAGTTATCAGTCGACATGAGATCCGAAATTTTGGCAAGCGCCTTTTTGG
GCCTGGCGGTTAGGTCGATTATCTCGCTGTACTCCTACTCCGGCTTCGAT
TCCCCGCCGATGCATGGCGACTACGAGGCCCAGCGCCACTGGCAAGAGAT
CACGGTCAATCTGGCAGTGGGGGAATGGTACACAAACAGCTCCAACAACG
ATCTTCAGTACTGGGGCCTGGATTATCCGCCTCTGACGGCCTACCACAGC
TATTTGGTGGGTCGCATAGGAGCATCCATTGACCCCCGCTTCGTCGAGCT
GCACAAGAGCAGGGGATTCGAGTCGAAGGAGCACAAACGCTTCATGCGCG
CAACAGTTGTTTCTGCTGACGTGCTCATCTATTTGCCGGCAATGTTGTTG
CTGGCCTATTCCCTAGATAAAGCCTTTCGAAGCGATGATAAATTGTTCCT
ATTCACGCTGGTGGCCGCGTATCCCGGACAAACACTCATCGACAATGGAC
ACTTTCAGTATAATAATATATCACTGGGCTTTGCCGCCGTGGCAATTGCC
GCAATCTTGCGAAGAAGATTCTACGCGGCTGCATTTTTCTTCACTTTAGC
CCTTAATTATAAGCAAATGGAGCTGTATCACAGCTTGCCGTTCTTTGCGT
TCCTTCTGGGTGAATGTGTAAGCCAAAAAAGCTTTGCTTCTTTTATCGCT
GAAATCTCACGGATAGCAGCCGTTGTCTTAGGAACATTTGCTATTTTATG
GGTTCCTTGGTTGGGATCTCTGCAGGCCGTACTTCAAGTACTCCATCGCC
TGTTTCCTGTCGCCCGAGGAGTTTTTGAGGACAAGGTGGCCAATGTTTGG
TGTGCCGTCAACGTAGTTTGGAAACTAAAGAAGCATATCAGCAATGACCA
AATGGCCCTTGTGTGCATTGCATGCACGTTAATTGCATCTTTGCCAACAA
ATGTACTACTCTTTCGAAGGCGAACTAATGTCGGATTTCTATTAGCGCTT
TTCAACACGAGCCTGGCATTCTTCTTGTTTTCATTTCAAGTGCACGAGAA
GACCATTTTGCTGACTGCTTTACCAGCACTTTTCCTACTTAAGTGCTGGC
CCGACGAAATGATTTTATTTCTGGAAGTTACCGTATTCAGCATGTTGCCT
CTTCTAGCAAGAGATGAATTGTTGGTGCCCGCCGTAGTGGCCACTGTGGC
TTTTCATTTGATATTCAAATGTTTTGATTCAAAGTCGAAGCTCAGCAACG
AATATCCACTGAAGTACATTGCAAATATATCGCAGATTCTGATGATCAGT
GTTGTGGTTGCTTCTCTGACCGTTCCGGCACCTACAAAGTATCCAGATCT
TTGGCCCCTTATTATTTCGGTTACAAGCTGTGGACACTTCTTCTTGTTTT
TCTTGTGGGGAAATGTTCAACAATTTAGCAGCAAGTTAAGTTAGAAGCTT
TCTAGACCAT

BS08162.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
gny-RB 1428 CG5091-PB 1..1428 17..1444 7140 100 Plus
gny-RA 1428 CG5091-PA 1..1428 17..1444 7140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
gny-RB 1521 CG5091-RB 47..1474 17..1444 7140 100 Plus
gny-RA 2557 CG5091-RA 47..1474 17..1444 7140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10380149..10380813 17..681 3325 100 Plus
2L 23513712 2L 10381377..10381781 1040..1444 2025 100 Plus
2L 23513712 2L 10380911..10381111 680..880 1005 100 Plus
2L 23513712 2L 10381163..10381324 880..1041 810 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:14:27 has no hits.

BS08162.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:59 Download gff for BS08162.complete
Subject Subject Range Query Range Percent Splice Strand
CG5091-RA 1..1428 17..1444 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:03 Download gff for BS08162.complete
Subject Subject Range Query Range Percent Splice Strand
CG5091-RA 32..1465 17..1454 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:37 Download gff for BS08162.complete
Subject Subject Range Query Range Percent Splice Strand
gny-RA 47..1474 17..1444 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:59 Download gff for BS08162.complete
Subject Subject Range Query Range Percent Splice Strand
CG5091-RA 32..1465 17..1454 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:27 Download gff for BS08162.complete
Subject Subject Range Query Range Percent Splice Strand
gny-RA 47..1474 17..1444 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:27 Download gff for BS08162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10380149..10380813 17..681 100 -> Plus
2L 10380913..10381110 682..879 100 -> Plus
2L 10381163..10381322 880..1039 100 -> Plus
2L 10381377..10381781 1040..1444 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:37 Download gff for BS08162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10380149..10380813 17..681 100 -> Plus
arm_2L 10380913..10381110 682..879 100 -> Plus
arm_2L 10381163..10381322 880..1039 100 -> Plus
arm_2L 10381377..10381781 1040..1444 100   Plus

BS08162.pep Sequence

Translation from 16 to 1443

> BS08162.pep
MRSEILASAFLGLAVRSIISLYSYSGFDSPPMHGDYEAQRHWQEITVNLA
VGEWYTNSSNNDLQYWGLDYPPLTAYHSYLVGRIGASIDPRFVELHKSRG
FESKEHKRFMRATVVSADVLIYLPAMLLLAYSLDKAFRSDDKLFLFTLVA
AYPGQTLIDNGHFQYNNISLGFAAVAIAAILRRRFYAAAFFFTLALNYKQ
MELYHSLPFFAFLLGECVSQKSFASFIAEISRIAAVVLGTFAILWVPWLG
SLQAVLQVLHRLFPVARGVFEDKVANVWCAVNVVWKLKKHISNDQMALVC
IACTLIASLPTNVLLFRRRTNVGFLLALFNTSLAFFLFSFQVHEKTILLT
ALPALFLLKCWPDEMILFLEVTVFSMLPLLARDELLVPAVVATVAFHLIF
KCFDSKSKLSNEYPLKYIANISQILMISVVVASLTVPAPTKYPDLWPLII
SVTSCGHFFLFFLWGNVQQFSSKLS*

BS08162.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
gny-PB 475 CG5091-PB 1..475 1..475 2445 100 Plus
gny-PA 475 CG5091-PA 1..475 1..475 2445 100 Plus
xit-PA 511 CG4542-PA 21..498 30..472 367 28.4 Plus