Clone BS08165 Report

Search the DGRC for BS08165

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:81
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG14613-RA
Protein status:BS08165.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08165.3prime Sequence

756 bp (755 high quality bases) assembled on 2006-01-06

> BS08165.3prime
ATGGTCTAGAAAGCTTTCATTCTCTCTCGTCCTTCTCTGCCTTGTCCGCC
TTAGCGCTTGCCCGGGTGGCCTTCTTGTCCTCGTACATCTTTATTAGCTC
GCTTTTTGTGGGCATGGGCTTAATGTAGCCGTGTTGCACCAGGTACTTAA
TGGATACGGTTGTACACCCCAAAGTAAGGGCGTAGCGCAGGGGCGTGGCC
ACTTTATAGCACAGATAGGCGATGGCGTAGTGCCCCATATCCGAGCCCTG
CACCTTCTCAATGATGTTCTCGCTCAAGTGGATGTACTGCAGCAAAGCGG
GCACATCGACGCCACTCTTTGACAGGTAGTAGAAGCCTCCAAACCAGCCC
ACTGACGTGAGCACGTGCACCGGGATGAGCACGTACCAGTACTGTTTGTA
CATGTGCTTGAACTTGGCGAACAAACCCATGTTTGCCGCCTCGCCAAAGA
GTTCGCTGGAGGTGGTGCTGTTGGTGGCCTTCAAATCCTTGCCGCCGGCT
GACGAGTTGTTAATGGCGGGCGCTGGTGCAGCCGCCGCCGGGTTCGCCGA
CTTGTGGTTGAAGCGGATGTTGACGGTGGGCAGGAGCAGGTTACGGCGAT
TCGCGAGAGGCCAGGAATCACTAGCCAGACTTGTTGGACTAGTCTCGGAC
ATCGTCGACAGGCACCTTGAGTGGGCGCCACCGAACAGCCGCAAGGAGCA
GGCAAGCAATCGCTGGCGCGACAGAAAGACCACTGTTGCCATGTCGACTG
ATAACT

BS08165.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14613-PA 726 CG14613-RA 1..726 742..17 3630 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14613-RB 1755 CG14613-RB 246..971 742..17 3630 100 Minus
CG14613-RA 1539 CG14613-RA 246..971 742..17 3630 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22471349..22471776 315..742 2140 100 Plus
X 23542271 X 22470827..22470979 17..169 765 100 Plus
X 23542271 X 22471141..22471289 168..316 745 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:42:26 has no hits.

BS08165.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:40 Download gff for BS08165.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14613-PA 1..726 17..742 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:33:20 Download gff for BS08165.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14613-PA 1..726 17..742 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:55:28 Download gff for BS08165.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14613-RA 240..971 17..747 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:58:57 Download gff for BS08165.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14613-RA 240..971 17..747 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:58:57 Download gff for BS08165.3prime
Subject Subject Range Query Range Percent Splice Strand
X 22470827..22470978 17..168 100 <- Plus
X 22471142..22471287 169..314 100 <- Plus
X 22471349..22471782 315..747 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:55:28 Download gff for BS08165.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21872663..21872814 17..168 100 <- Plus
arm_X 21872978..21873123 169..314 100 <- Plus
arm_X 21873185..21873618 315..747 99   Plus

BS08165.5prime Sequence

756 bp (721 high quality bases) assembled on 2006-01-06

> BS08165.5prime
GAAGTTATCAGTCGACATGGCAACAGTGGTCTTTCTGTCGCGCCAGCGAT
TGCTTGCCTGCTCCTTGCGGCTGTTCGGTGGCGCCCACTCAAGGTGCCTG
TCGACGATGTCCGAGACTAGTCCAACAAGTCTGGCTAGTGATTCCTGGCC
TCTCGCGAATCGCCGTAACCTGCTCCTGCCCACCGTCAACATCCGCTTCA
ACCACAAGTCGGCGAACCCGGCGGCGGCTGCACCAGCGCCCGCCATTAAC
AACTCGTCAGCCGGCGGCAAGGATTTGAAGGCCACCAACAGCACCACCTC
CAGCGAACTCTTTGGCGAGGCGGCAAACATGGGTTTGTTCGCCAAGTTCA
AGCACATGTACAAACAGTACTGGTACGTGCTCATCCCGGTGCACGTGCTC
ACGTCAGTGGGCTGGTTTGGAGGCTTCTACTACCTGTCAAAGAGTGGCGT
CGATGTGCCCGCTTTGCTGCAGTACATCCACTTGAGCGAGAACATCATTG
AGAAGGTGCAGGGCTCGGATATGGGGCACTACGCCATCGCCTATCTGTGC
TATAAAGTGGCCACGCCCCTGCGCTACGCCCTTACTTTGGGGTGTACAAC
CGTATCCATTAAGTACCTGGTGCAACACGGCTACATTAAGCCCATGCCCA
CAAAAAGCGAGCTAATAAAGATGTACGAGGACAAGAAGGCCACCCGGGCA
AGCGCTAAGGCGGACAAGGCAGAGAAGGACGAGAGAGAATGAAAGCTTTC
TAGACC

BS08165.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14613-PA 726 CG14613-RA 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14613-RB 1755 CG14613-RB 246..971 17..742 3630 100 Plus
CG14613-RA 1539 CG14613-RA 246..971 17..742 3630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22471349..22471776 444..17 2140 100 Minus
X 23542271 X 22470827..22470979 742..590 765 100 Minus
X 23542271 X 22471141..22471289 591..443 745 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:04:47 has no hits.

BS08165.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:41 Download gff for BS08165.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14613-PA 1..726 17..742 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:33:21 Download gff for BS08165.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14613-PA 1..726 17..742 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:27:18 Download gff for BS08165.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14613-RA 240..971 12..742 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:24 Download gff for BS08165.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14613-RA 240..971 12..742 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:24 Download gff for BS08165.5prime
Subject Subject Range Query Range Percent Splice Strand
X 22470827..22470978 591..742 100 <- Minus
X 22471142..22471287 445..590 100 <- Minus
X 22471349..22471782 12..444 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:27:18 Download gff for BS08165.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21872663..21872814 591..742 100 <- Minus
arm_X 21872978..21873123 445..590 100 <- Minus
arm_X 21873185..21873618 12..444 99   Minus

BS08165.complete Sequence

758 bp (758 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636119

> BS08165.complete
GAAGTTATCAGTCGACATGGCAACAGTGGTCTTTCTGTCGCGCCAGCGAT
TGCTTGCCTGCTCCTTGCGGCTGTTCGGTGGCGCCCACTCAAGGTGCCTG
TCGACGATGTCCGAGACTAGTCCAACAAGTCTGGCTAGTGATTCCTGGCC
TCTCGCGAATCGCCGTAACCTGCTCCTGCCCACCGTCAACATCCGCTTCA
ACCACAAGTCGGCGAACCCGGCGGCGGCTGCACCAGCGCCCGCCATTAAC
AACTCGTCAGCCGGCGGCAAGGATTTGAAGGCCACCAACAGCACCACCTC
CAGCGAACTCTTTGGCGAGGCGGCAAACATGGGTTTGTTCGCCAAGTTCA
AGCACATGTACAAACAGTACTGGTACGTGCTCATCCCGGTGCACGTGCTC
ACGTCAGTGGGCTGGTTTGGAGGCTTCTACTACCTGTCAAAGAGTGGCGT
CGATGTGCCCGCTTTGCTGCAGTACATCCACTTGAGCGAGAACATCATTG
AGAAGGTGCAGGGCTCGGATATGGGGCACTACGCCATCGCCTATCTGTGC
TATAAAGTGGCCACGCCCCTGCGCTACGCCCTTACTTTGGGGTGTACAAC
CGTATCCATTAAGTACCTGGTGCAACACGGCTACATTAAGCCCATGCCCA
CAAAAAGCGAGCTAATAAAGATGTACGAGGACAAGAAGGCCACCCGGGCA
AGCGCTAAGGCGGACAAGGCAGAGAAGGACGAGAGAGAATGAAAGCTTTC
TAGACCAT

BS08165.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14613-RB 726 CG14613-PB 1..726 17..742 3630 100 Plus
CG14613-RA 726 CG14613-PA 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14613-RB 1755 CG14613-RB 246..971 17..742 3630 100 Plus
CG14613-RA 1539 CG14613-RA 246..971 17..742 3630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22471349..22471776 444..17 2140 100 Minus
X 23542271 X 22470827..22470979 742..590 765 100 Minus
X 23542271 X 22471141..22471289 591..443 745 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:42:08 has no hits.

BS08165.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:01 Download gff for BS08165.complete
Subject Subject Range Query Range Percent Splice Strand
CG14613-RA 1..726 17..742 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:05 Download gff for BS08165.complete
Subject Subject Range Query Range Percent Splice Strand
CG14613-RA 194..925 12..742 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:49 Download gff for BS08165.complete
Subject Subject Range Query Range Percent Splice Strand
CG14613-RA 246..970 17..741 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:02 Download gff for BS08165.complete
Subject Subject Range Query Range Percent Splice Strand
CG14613-RA 194..925 12..742 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:06 Download gff for BS08165.complete
Subject Subject Range Query Range Percent Splice Strand
CG14613-RA 246..970 17..741 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:06 Download gff for BS08165.complete
Subject Subject Range Query Range Percent Splice Strand
X 22470828..22470978 591..741 100 <- Minus
X 22471142..22471287 445..590 100 <- Minus
X 22471349..22471776 17..444 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:49 Download gff for BS08165.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21872664..21872814 591..741 100 <- Minus
arm_X 21872978..21873123 445..590 100 <- Minus
arm_X 21873185..21873612 17..444 100   Minus

BS08165.pep Sequence

Translation from 16 to 741

> BS08165.pep
MATVVFLSRQRLLACSLRLFGGAHSRCLSTMSETSPTSLASDSWPLANRR
NLLLPTVNIRFNHKSANPAAAAPAPAINNSSAGGKDLKATNSTTSSELFG
EAANMGLFAKFKHMYKQYWYVLIPVHVLTSVGWFGGFYYLSKSGVDVPAL
LQYIHLSENIIEKVQGSDMGHYAIAYLCYKVATPLRYALTLGCTTVSIKY
LVQHGYIKPMPTKSELIKMYEDKKATRASAKADKAEKDERE*

BS08165.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14613-PB 241 CG14613-PB 1..241 1..241 1248 100 Plus
CG14613-PA 241 CG14613-PA 1..241 1..241 1248 100 Plus
CG15403-PA 200 CG15403-PA 78..200 91..212 161 31.2 Plus