Clone Sequence Records
BS08165.3prime Sequence
756 bp (755 high quality bases) assembled on 2006-01-06
> BS08165.3prime
ATGGTCTAGAAAGCTTTCATTCTCTCTCGTCCTTCTCTGCCTTGTCCGCC
TTAGCGCTTGCCCGGGTGGCCTTCTTGTCCTCGTACATCTTTATTAGCTC
GCTTTTTGTGGGCATGGGCTTAATGTAGCCGTGTTGCACCAGGTACTTAA
TGGATACGGTTGTACACCCCAAAGTAAGGGCGTAGCGCAGGGGCGTGGCC
ACTTTATAGCACAGATAGGCGATGGCGTAGTGCCCCATATCCGAGCCCTG
CACCTTCTCAATGATGTTCTCGCTCAAGTGGATGTACTGCAGCAAAGCGG
GCACATCGACGCCACTCTTTGACAGGTAGTAGAAGCCTCCAAACCAGCCC
ACTGACGTGAGCACGTGCACCGGGATGAGCACGTACCAGTACTGTTTGTA
CATGTGCTTGAACTTGGCGAACAAACCCATGTTTGCCGCCTCGCCAAAGA
GTTCGCTGGAGGTGGTGCTGTTGGTGGCCTTCAAATCCTTGCCGCCGGCT
GACGAGTTGTTAATGGCGGGCGCTGGTGCAGCCGCCGCCGGGTTCGCCGA
CTTGTGGTTGAAGCGGATGTTGACGGTGGGCAGGAGCAGGTTACGGCGAT
TCGCGAGAGGCCAGGAATCACTAGCCAGACTTGTTGGACTAGTCTCGGAC
ATCGTCGACAGGCACCTTGAGTGGGCGCCACCGAACAGCCGCAAGGAGCA
GGCAAGCAATCGCTGGCGCGACAGAAAGACCACTGTTGCCATGTCGACTG
ATAACT
BS08165.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14613-PA | 726 | CG14613-RA | 1..726 | 742..17 | 3630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:42:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14613-RB | 1755 | CG14613-RB | 246..971 | 742..17 | 3630 | 100 | Minus |
CG14613-RA | 1539 | CG14613-RA | 246..971 | 742..17 | 3630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:42:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22471349..22471776 | 315..742 | 2140 | 100 | Plus |
X | 23542271 | X | 22470827..22470979 | 17..169 | 765 | 100 | Plus |
X | 23542271 | X | 22471141..22471289 | 168..316 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:42:26 has no hits.
BS08165.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:40 Download gff for
BS08165.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-PA | 1..726 | 17..742 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:33:20 Download gff for
BS08165.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-PA | 1..726 | 17..742 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:55:28 Download gff for
BS08165.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-RA | 240..971 | 17..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:58:57 Download gff for
BS08165.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-RA | 240..971 | 17..747 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:58:57 Download gff for
BS08165.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22470827..22470978 | 17..168 | 100 | <- | Plus |
X | 22471142..22471287 | 169..314 | 100 | <- | Plus |
X | 22471349..22471782 | 315..747 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:55:28 Download gff for
BS08165.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21872663..21872814 | 17..168 | 100 | <- | Plus |
arm_X | 21872978..21873123 | 169..314 | 100 | <- | Plus |
arm_X | 21873185..21873618 | 315..747 | 99 | | Plus |
BS08165.5prime Sequence
756 bp (721 high quality bases) assembled on 2006-01-06
> BS08165.5prime
GAAGTTATCAGTCGACATGGCAACAGTGGTCTTTCTGTCGCGCCAGCGAT
TGCTTGCCTGCTCCTTGCGGCTGTTCGGTGGCGCCCACTCAAGGTGCCTG
TCGACGATGTCCGAGACTAGTCCAACAAGTCTGGCTAGTGATTCCTGGCC
TCTCGCGAATCGCCGTAACCTGCTCCTGCCCACCGTCAACATCCGCTTCA
ACCACAAGTCGGCGAACCCGGCGGCGGCTGCACCAGCGCCCGCCATTAAC
AACTCGTCAGCCGGCGGCAAGGATTTGAAGGCCACCAACAGCACCACCTC
CAGCGAACTCTTTGGCGAGGCGGCAAACATGGGTTTGTTCGCCAAGTTCA
AGCACATGTACAAACAGTACTGGTACGTGCTCATCCCGGTGCACGTGCTC
ACGTCAGTGGGCTGGTTTGGAGGCTTCTACTACCTGTCAAAGAGTGGCGT
CGATGTGCCCGCTTTGCTGCAGTACATCCACTTGAGCGAGAACATCATTG
AGAAGGTGCAGGGCTCGGATATGGGGCACTACGCCATCGCCTATCTGTGC
TATAAAGTGGCCACGCCCCTGCGCTACGCCCTTACTTTGGGGTGTACAAC
CGTATCCATTAAGTACCTGGTGCAACACGGCTACATTAAGCCCATGCCCA
CAAAAAGCGAGCTAATAAAGATGTACGAGGACAAGAAGGCCACCCGGGCA
AGCGCTAAGGCGGACAAGGCAGAGAAGGACGAGAGAGAATGAAAGCTTTC
TAGACC
BS08165.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14613-PA | 726 | CG14613-RA | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14613-RB | 1755 | CG14613-RB | 246..971 | 17..742 | 3630 | 100 | Plus |
CG14613-RA | 1539 | CG14613-RA | 246..971 | 17..742 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22471349..22471776 | 444..17 | 2140 | 100 | Minus |
X | 23542271 | X | 22470827..22470979 | 742..590 | 765 | 100 | Minus |
X | 23542271 | X | 22471141..22471289 | 591..443 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:04:47 has no hits.
BS08165.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:41 Download gff for
BS08165.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-PA | 1..726 | 17..742 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:33:21 Download gff for
BS08165.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-PA | 1..726 | 17..742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:27:18 Download gff for
BS08165.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-RA | 240..971 | 12..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:24 Download gff for
BS08165.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-RA | 240..971 | 12..742 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:24 Download gff for
BS08165.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22470827..22470978 | 591..742 | 100 | <- | Minus |
X | 22471142..22471287 | 445..590 | 100 | <- | Minus |
X | 22471349..22471782 | 12..444 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:27:18 Download gff for
BS08165.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21872663..21872814 | 591..742 | 100 | <- | Minus |
arm_X | 21872978..21873123 | 445..590 | 100 | <- | Minus |
arm_X | 21873185..21873618 | 12..444 | 99 | | Minus |
BS08165.complete Sequence
758 bp (758 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636119
> BS08165.complete
GAAGTTATCAGTCGACATGGCAACAGTGGTCTTTCTGTCGCGCCAGCGAT
TGCTTGCCTGCTCCTTGCGGCTGTTCGGTGGCGCCCACTCAAGGTGCCTG
TCGACGATGTCCGAGACTAGTCCAACAAGTCTGGCTAGTGATTCCTGGCC
TCTCGCGAATCGCCGTAACCTGCTCCTGCCCACCGTCAACATCCGCTTCA
ACCACAAGTCGGCGAACCCGGCGGCGGCTGCACCAGCGCCCGCCATTAAC
AACTCGTCAGCCGGCGGCAAGGATTTGAAGGCCACCAACAGCACCACCTC
CAGCGAACTCTTTGGCGAGGCGGCAAACATGGGTTTGTTCGCCAAGTTCA
AGCACATGTACAAACAGTACTGGTACGTGCTCATCCCGGTGCACGTGCTC
ACGTCAGTGGGCTGGTTTGGAGGCTTCTACTACCTGTCAAAGAGTGGCGT
CGATGTGCCCGCTTTGCTGCAGTACATCCACTTGAGCGAGAACATCATTG
AGAAGGTGCAGGGCTCGGATATGGGGCACTACGCCATCGCCTATCTGTGC
TATAAAGTGGCCACGCCCCTGCGCTACGCCCTTACTTTGGGGTGTACAAC
CGTATCCATTAAGTACCTGGTGCAACACGGCTACATTAAGCCCATGCCCA
CAAAAAGCGAGCTAATAAAGATGTACGAGGACAAGAAGGCCACCCGGGCA
AGCGCTAAGGCGGACAAGGCAGAGAAGGACGAGAGAGAATGAAAGCTTTC
TAGACCAT
BS08165.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14613-RB | 726 | CG14613-PB | 1..726 | 17..742 | 3630 | 100 | Plus |
CG14613-RA | 726 | CG14613-PA | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14613-RB | 1755 | CG14613-RB | 246..971 | 17..742 | 3630 | 100 | Plus |
CG14613-RA | 1539 | CG14613-RA | 246..971 | 17..742 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22471349..22471776 | 444..17 | 2140 | 100 | Minus |
X | 23542271 | X | 22470827..22470979 | 742..590 | 765 | 100 | Minus |
X | 23542271 | X | 22471141..22471289 | 591..443 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:42:08 has no hits.
BS08165.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:01 Download gff for
BS08165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-RA | 1..726 | 17..742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:05 Download gff for
BS08165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-RA | 194..925 | 12..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:49 Download gff for
BS08165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-RA | 246..970 | 17..741 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:02 Download gff for
BS08165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-RA | 194..925 | 12..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:06 Download gff for
BS08165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14613-RA | 246..970 | 17..741 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:06 Download gff for
BS08165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22470828..22470978 | 591..741 | 100 | <- | Minus |
X | 22471142..22471287 | 445..590 | 100 | <- | Minus |
X | 22471349..22471776 | 17..444 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:49 Download gff for
BS08165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21872664..21872814 | 591..741 | 100 | <- | Minus |
arm_X | 21872978..21873123 | 445..590 | 100 | <- | Minus |
arm_X | 21873185..21873612 | 17..444 | 100 | | Minus |
BS08165.pep Sequence
Translation from 16 to 741
> BS08165.pep
MATVVFLSRQRLLACSLRLFGGAHSRCLSTMSETSPTSLASDSWPLANRR
NLLLPTVNIRFNHKSANPAAAAPAPAINNSSAGGKDLKATNSTTSSELFG
EAANMGLFAKFKHMYKQYWYVLIPVHVLTSVGWFGGFYYLSKSGVDVPAL
LQYIHLSENIIEKVQGSDMGHYAIAYLCYKVATPLRYALTLGCTTVSIKY
LVQHGYIKPMPTKSELIKMYEDKKATRASAKADKAEKDERE*
BS08165.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14613-PB | 241 | CG14613-PB | 1..241 | 1..241 | 1248 | 100 | Plus |
CG14613-PA | 241 | CG14613-PA | 1..241 | 1..241 | 1248 | 100 | Plus |
CG15403-PA | 200 | CG15403-PA | 78..200 | 91..212 | 161 | 31.2 | Plus |