Clone Sequence Records
BS08169.3prime Sequence
893 bp (881 high quality bases) assembled on 2006-01-06
> BS08169.3prime
ATGGTCTAGAAAGCTTCTAGATGCCCTGGTTGATGCCTATTTTCGTCTTG
GTGAGGAGACCCTCGTCGCCCATGTCTGCATTGTAGCCAGGACGGTACTT
CATGCCGGGAGCATTGAACCAGACATCACGCCAGACTTTGCCGTCGTCAG
CGCTGCGCACCAGCTCCGGGACATCGAAACGCGGCACATTGAAGTAATTC
ATCAGATCGGGCTTCTCATGGCAGTACTTGATACGGGCTTCGCACCACTC
GGCCTCCAGCGGGAAACGCCAGTCGAGCATCTTCTTGTTGTGAATATCGG
CCTCAAACTGGTTGAAGTCGATGCGTTCGATATCCTCCACCACAACCTCA
GTCTCACCGCCGGCTGTCCAGTCGTAGATGAGCAGCTCGGCATGGGTGGA
GATGTCCTTGAGGTACTGCTGCTTGTACAGCTGCTCCAAATCGCTCAAGT
AGGCATCGCTGAACACCTTTGACTGCACCTCGTAGTCCACATTGCGTGCC
TTGATCTGCTTCTTCACGGCATCGACCGGCAGATCCAAGTAGATAACCAA
ATGCGGCTTCAGCAGCTCCCCGATGGTGTTCTGTCGGAGCTCATTATACA
CGGAACGCGCACCGCGTGACAGATAACCCTGCCGAAACATGGCCTCCATG
AAGACAAAGTCCGAGTAGGGGCTGCGCTCGAGGACAACACCCTGGCCGGT
GCTAAGGACGTGCTGCAGGGCATCAATGTACTGCGAATAGCGCAGCATGT
ACATGCGAATCTGGAACTGGGCAGCCAGATCGTGGCTGGGATCCAGGCAG
AAGTTGCGCACATCGTAGCTTCGGCAGCTGGGCGGCAACTGAGGATCCAA
CTTCCTCATGTCATAGCCGTACGAATTGATGTAGATTAGGTCC
BS08169.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6343-PA | 1224 | ND42-RA | 348..1224 | 893..17 | 4385 | 100 | Minus |
| CG6343-PB | 1224 | ND42-RB | 348..1224 | 893..17 | 4385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ND42-RC | 1423 | CG6343-RC | 465..1342 | 893..16 | 4390 | 100 | Minus |
| ND42-RB | 1618 | CG6343-RB | 660..1537 | 893..16 | 4390 | 100 | Minus |
| ND42-RA | 1379 | CG6343-RA | 421..1298 | 893..16 | 4390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:41:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22028368..22029149 | 893..112 | 3910 | 100 | Minus |
| 3R | 32079331 | 3R | 22029216..22029312 | 112..16 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 15:41:20 has no hits.
BS08169.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:49 Download gff for
BS08169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND42-PB | 348..1224 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:33:32 Download gff for
BS08169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6343-PB | 348..1224 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:16:41 Download gff for
BS08169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND42-RA | 421..1304 | 10..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:03 Download gff for
BS08169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND42-RA | 421..1304 | 10..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:03 Download gff for
BS08169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22028368..22029148 | 113..893 | 100 | -> | Minus |
| 3R | 22029216..22029318 | 10..112 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:16:41 Download gff for
BS08169.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17854938..17855040 | 10..112 | 98 | | Minus |
| arm_3R | 17854090..17854870 | 113..893 | 100 | -> | Minus |
BS08169.5prime Sequence
937 bp (845 high quality bases) assembled on 2006-01-06
> BS08169.5prime
GAAGTTATCAGTCGACATGACCGCCGTGTTCCGCGTAGGACTGGTGCGGC
TCGTCAGCCGCGCCACACAGTCGCCCAATCTACTCCAGGCGCAGACGAAT
GCCCTGCCTGCTGCCTTCCAGCAGCGATGCAGCATCTCCGGCAAGACGAT
GCGAGGTGGACCACGGGTGCCCAAGGCCGCCCCCTATCCGTACAAGACGA
AGAAGTACAGCGTGTTCAATGCTATTTTCGACAAGACCTCCAAGCGTTTT
GACGAGAACTCCAAGGTGATCTGTGTGGAGGGACCCATCGCGGCCGGCAA
GTCAAAGTTCGCCAAGGAACTGGCTGAGGAGCTGGACATGGAGTACTATC
CGGCAGTTGATCTGGACCTAATCTACATCAATTCGTACGGCTATGACATG
AGGAAGTTGGATCCTCAGTTGCCGCCCAGCTGCCGAAGCTACGATGTGCG
CAACTTCTGCCTGGATCCCAGCCACGATCTGGCTGCCCAGTTCCAGATTC
GCATGTACATGCTGCGCTATTCGCAGTACATTGATGCCCTGCAGCACGTC
CTTAGCACCGGCCAGGGTGTTGTCCTCGAGCGCAGCCCCTACTCGGACTT
TGTCTTCATGGAGGCCATGTTTCGGCAGGGTTATCTGTCACGCGGTGCGC
GTTCCGTGTATAATGAGCTCCGACAGAACACCATCGGGGAGCTGCTGAAG
CCGCATTTGGTTATCTACTTGGATCTGCCGGTCGATGCCGTGAAGAAGCA
GATCAAGGCACGCAATGTGGACTACGAGGTGCAGTCAAAGGTGTTCAGCG
ATGCCTACTTGAGCGATTTGGAGCAGCTGTACAAGCAGCAGTACCTCAAG
GACATCTCCACCCATGCCGAGCTGCTCATCTACGACTGGACAGCCGGCGG
TGAGACTGAAGTTGTGGTGGAGGATATCGAACGCATC
BS08169.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6343-PA | 1224 | ND42-RA | 1..921 | 17..937 | 4580 | 99.8 | Plus |
| CG6343-PB | 1224 | ND42-RB | 1..921 | 17..937 | 4580 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ND42-RC | 1423 | CG6343-RC | 118..1038 | 17..937 | 4590 | 99.9 | Plus |
| ND42-RB | 1618 | CG6343-RB | 313..1233 | 17..937 | 4590 | 99.9 | Plus |
| ND42-RA | 1379 | CG6343-RA | 74..994 | 17..937 | 4590 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:02:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22028021..22028941 | 17..937 | 4590 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:02:44 has no hits.
BS08169.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:50 Download gff for
BS08169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND42-PB | 1..921 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:33:33 Download gff for
BS08169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6343-PB | 1..921 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:13:06 Download gff for
BS08169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND42-RA | 74..994 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:08 Download gff for
BS08169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND42-RA | 74..994 | 17..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:08 Download gff for
BS08169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22028016..22028941 | 8..937 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:13:06 Download gff for
BS08169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17853738..17854663 | 8..937 | 99 | | Plus |
BS08169.complete Sequence
1256 bp (1256 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636121
> BS08169.complete
GAAGTTATCAGTCGACATGACCGCCGTGTTCCGCGTAGGACTGGTGCGGC
TCGTCAGCCGCGCCACACAGTCGCCCAATCTACTCCAGGCGCAGACGAAT
GCCCTGCCTGCTGCCTTCCAGCAGCGATGCAGCATCTCCGGCAAGACGAT
GCGAGGTGGACCACGGGTGCCCAAGGCCGCCCCCTATCCGTACAAGACGA
AGAAGTACAGCGTGTTCAATGCTATTTTCGACAAGACCTCCAAGCGTTTT
GACGAGAACTCCAAGGTGATCTGTGTGGAGGGACCCATCGCGGCCGGCAA
GTCAAAGTTCGCCAAGGAACTGGCTGAGGAGCTGGACATGGAGTACTATC
CGGCAGTTGATCTGGACCTAATCTACATCAATTCGTACGGCTATGACATG
AGGAAGTTGGATCCTCAGTTGCCGCCCAGCTGCCGAAGCTACGATGTGCG
CAACTTCTGCCTGGATCCCAGCCACGATCTGGCTGCCCAGTTCCAGATTC
GCATGTACATGCTGCGCTATTCGCAGTACATTGATGCCCTGCAGCACGTC
CTTAGCACCGGCCAGGGTGTTGTCCTCGAGCGCAGCCCCTACTCGGACTT
TGTCTTCATGGAGGCCATGTTTCGGCAGGGTTATCTGTCACGCGGTGCGC
GTTCCGTGTATAATGAGCTCCGACAGAACACCATCGGGGAGCTGCTGAAG
CCGCATTTGGTTATCTACTTGGATCTGCCGGTCGATGCCGTGAAGAAGCA
GATCAAGGCACGCAATGTGGACTACGAGGTGCAGTCAAAGGTGTTCAGCG
ATGCCTACTTGAGCGATTTGGAGCAGCTGTACAAGCAGCAGTACCTCAAG
GACATCTCCACCCATGCCGAGCTGCTCATCTACGACTGGACAGCCGGCGG
TGAGACTGAGGTTGTGGTGGAGGATATCGAACGCATCGACTTCAACCAGT
TTGAGGCCGATATTCACAACAAGAAGATGCTCGACTGGCGTTTCCCGCTG
GAGGCCGAGTGGTGCGAAGCCCGTATCAAGTACTGCCATGAGAAGCCCGA
TCTGATGAATTACTTCAATGTGCCGCGTTTCGATGTCCCGGAGCTGGTGC
GCAGCGCTGACGACGGCAAAGTCTGGCGTGATGTCTGGTTCAATGCTCCC
GGCATGAAGTACCGTCCTGGCTACAATGCAGACATGGGCGACGAGGGTCT
CCTCACCAAGACGAAAATAGGCATCAACCAGGGCATCTAGAAGCTTTCTA
GACCAT
BS08169.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ND42-RC | 1224 | CG6343-PC | 1..1224 | 17..1240 | 6120 | 100 | Plus |
| ND42-RB | 1224 | CG6343-PB | 1..1224 | 17..1240 | 6120 | 100 | Plus |
| ND42-RA | 1224 | CG6343-PA | 1..1224 | 17..1240 | 6120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ND42-RC | 1423 | CG6343-RC | 118..1342 | 17..1241 | 6125 | 100 | Plus |
| ND42-RB | 1618 | CG6343-RB | 313..1537 | 17..1241 | 6125 | 100 | Plus |
| ND42-RA | 1379 | CG6343-RA | 74..1298 | 17..1241 | 6125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22028021..22029149 | 17..1145 | 5645 | 100 | Plus |
| 3R | 32079331 | 3R | 22029216..22029312 | 1145..1241 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:43:03 has no hits.
BS08169.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:03 Download gff for
BS08169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND42-RB | 1..1224 | 17..1240 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:07 Download gff for
BS08169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND42-RB | 231..1466 | 8..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:10 Download gff for
BS08169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND42-RA | 74..1297 | 17..1240 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:03 Download gff for
BS08169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND42-RB | 231..1466 | 8..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:16 Download gff for
BS08169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND42-RA | 74..1297 | 17..1240 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:16 Download gff for
BS08169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22028021..22029148 | 17..1144 | 100 | -> | Plus |
| 3R | 22029216..22029311 | 1145..1240 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:10 Download gff for
BS08169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17853743..17854870 | 17..1144 | 100 | -> | Plus |
| arm_3R | 17854938..17855033 | 1145..1240 | 100 | | Plus |
BS08169.pep Sequence
Translation from 16 to 1239
> BS08169.pep
MTAVFRVGLVRLVSRATQSPNLLQAQTNALPAAFQQRCSISGKTMRGGPR
VPKAAPYPYKTKKYSVFNAIFDKTSKRFDENSKVICVEGPIAAGKSKFAK
ELAEELDMEYYPAVDLDLIYINSYGYDMRKLDPQLPPSCRSYDVRNFCLD
PSHDLAAQFQIRMYMLRYSQYIDALQHVLSTGQGVVLERSPYSDFVFMEA
MFRQGYLSRGARSVYNELRQNTIGELLKPHLVIYLDLPVDAVKKQIKARN
VDYEVQSKVFSDAYLSDLEQLYKQQYLKDISTHAELLIYDWTAGGETEVV
VEDIERIDFNQFEADIHNKKMLDWRFPLEAEWCEARIKYCHEKPDLMNYF
NVPRFDVPELVRSADDGKVWRDVWFNAPGMKYRPGYNADMGDEGLLTKTK
IGINQGI*
BS08169.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ND42-PC | 407 | CG6343-PC | 1..407 | 1..407 | 2146 | 100 | Plus |
| ND42-PB | 407 | CG6343-PB | 1..407 | 1..407 | 2146 | 100 | Plus |
| ND42-PA | 407 | CG6343-PA | 1..407 | 1..407 | 2146 | 100 | Plus |
