Clone Sequence Records
BS08173.3prime Sequence
978 bp (746 high quality bases) assembled on 2006-01-06
> BS08173.3prime
ATGGTCTAGAAAGCTTTTACGGACACTTCCGCTCGACTTGGCTCTTGCCG
GCCTCTTCGTACTCCTGCGACGATATCCACATCTGTTGGAAAGTACCTAT
GCTGGCTAGAATAGAGCCGCCAATCCAGGCTCCAAATCTTCGCTCCACGC
TGCCATTGGCAGAAATCATTTTTAGGCGCGTATTTGAGGGGGCACGCAGC
TGGAGATCGCGATTTAGGCGCTCCGGAAAGCCTTGCAGAAGGGTATTGCC
ACCAGTAACGACAACTGAGCCGAAAAGTGACAGCCGCACATCCGCATCAC
ACATGCCCACACTGGTGGACGCCAATTGGCCAGCTCCCAGCATTGCATTG
TCAAAGAGACTCTCGGCTATCTTGAACCGCTCAGAGCCAAAGTCCTGATG
ATAACCATTAGGAAACTCATAGTGTACCGTCGGGATTTGAGCAGCAACCC
GTTCGTCGAACGGATTTTCTAGGACCTGCAGCACATTCATCTGAAAGTCT
TGCATCATGAGCTGCAACATGTAGTTTTGCCACGACTGAGTTAGGTTCTC
TGGCAGTTTGCGCAGCGTGAAGCGTCCGTTGTCGCGCTCCTTAACAACGT
CTTTGGAGGCAATCTTGTATACCGGCGACAGATCAATGCCGTGCTTCTCC
AGATGCTGGCGGCACTGTCGTGAAAGGAAGTCTCCACCCAGGGGTGACTT
AACCACCGCCTGGGATAGGACATAGCCCTCATGGACGGGAACGGCCGAGG
TGTGGGTGGCTCCACTATCGACAACCAAAGCGGTGGCCCGCCCGCTGGAG
AAGGCAGCCAGAACGGCGTTCTTTACCAGAAAGAAGGCTGGAACATTGTA
CTTCTCGAACATAAGCTCGGTTAGCTTCTCGCGGTTGTTGCGGACATTCC
ACGATGCCTCGGAAAAGAGCACGGGATGGTATTCCGGCTCCGACTGAATG
ACATTGGCGTAAGCATAATCAATAACCT
BS08173.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6546-PA | 1278 | Bap55-RA | 317..1278 | 978..17 | 4785 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bap55-RA | 1473 | CG6546-RA | 440..1401 | 978..17 | 4795 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17429718..17430445 | 251..978 | 3625 | 99.9 | Plus |
| 2R | 25286936 | 2R | 17429425..17429661 | 17..253 | 1185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:39:27 has no hits.
BS08173.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:57 Download gff for
BS08173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-PA | 317..1278 | 17..978 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:33:44 Download gff for
BS08173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6546-PA | 317..1278 | 17..978 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:54:56 Download gff for
BS08173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 440..1401 | 17..978 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:02:18 Download gff for
BS08173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 440..1401 | 17..978 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:02:18 Download gff for
BS08173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17429425..17429660 | 17..252 | 100 | <- | Plus |
| 2R | 17429720..17430445 | 253..978 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:54:56 Download gff for
BS08173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13316930..13317165 | 17..252 | 100 | <- | Plus |
| arm_2R | 13317225..13317950 | 253..978 | 99 | | Plus |
BS08173.5prime Sequence
930 bp (854 high quality bases) assembled on 2006-01-06
> BS08173.5prime
GAAGTTATCAGTCGACATGAGTGGCGGCACCATGCTATATGGCGGCGACG
AGATCGGCGCCCTGGTCTTCGATCCTGGACATCATTCCTTGCGAGTGGGC
TACGCACAGGAGGATTCGCCCAAGGCGGAGATACCCTCGGTTGTGGGGAT
TGGAGCAGCTCCAGAGACCAATCTCGATCCGGAAACTAAAACAGACAACA
ATGCCACGCCAAATAATGCTGACCAGCGCAAGTTCTATGTGGACACCAAC
TACGTGACCGTTCCCCGTTCCAATATGGAGGTGCAGACCTATATGAAAGA
CGGCATGATTGACAACTGGGACCTGTTTGAGAAGGTTATTGATTATGCCT
ACGCCAATGTCATTCAGTCGGAGCCGGAATACCATCCCGTGCTCTTTTCC
GAGGCATCGTGGAATGTCCGCAACAACCGCGAGAAGCTAACCGAGCTTAT
GTTCGAGAAGTACAATGTTCCAGCCTTCTTTCTGGTAAAGAACGCCGTTC
TGGCTGCCTTCTCCAGCGGGCGGGCCACCGCTTTGGTTGTCGATAGTGGA
GCCACCCACACCTCGGCCGTTCCCGTCCATGAGGGCTATGTCCTATCCCA
GGCGGTGGTTAAGTCACCCCTGGGTGGAGACTTCCTTTCACGACAGTGCC
GCCAGCATCTGGAGAAGCACGGCATTGATCTGTCGCCGGTATACAAGATT
GCCTCCAAAGACGTTGTTAAGGAGCGCGACAACGGACGCTTCACGCTGCG
CAAACTGCCAGAGAACCTAACTCAGTCGTGGCAAAACTACATGTTGCAGC
TCATGATGCAAGACTTTCAGATGAATGTGCTGCANGTCCTAGAAAATCCG
TTCGACGAACGGGGTGCTGCTCAAATCCCGACGGTACACTATGAGTTTCC
TAATGGTTATCATCAGGACTTTGGCTCTGA
BS08173.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6546-PA | 1278 | Bap55-RA | 1..914 | 17..930 | 4526 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bap55-RA | 1473 | CG6546-RA | 124..1037 | 17..930 | 4544 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17429848..17430562 | 930..216 | 3549 | 99.7 | Minus |
| 2R | 25286936 | 2R | 17430642..17430840 | 215..17 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:30:27 has no hits.
BS08173.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:58 Download gff for
BS08173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:33:45 Download gff for
BS08173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6546-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:41:40 Download gff for
BS08173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 124..1036 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:58 Download gff for
BS08173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 124..1036 | 17..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:58 Download gff for
BS08173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17429849..17430562 | 216..929 | 99 | <- | Minus |
| 2R | 17430642..17430840 | 17..215 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:41:40 Download gff for
BS08173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13317354..13318067 | 216..929 | 99 | <- | Minus |
| arm_2R | 13318147..13318345 | 17..215 | 100 | | Minus |
BS08173.complete Sequence
1310 bp (1310 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636122
> BS08173.complete
GAAGTTATCAGTCGACATGAGTGGCGGCACCATGCTATATGGCGGCGACG
AGATCGGCGCCCTGGTCTTCGATCCTGGACATCATTCCTTGCGAGTGGGC
TACGCACAGGAGGATTCGCCCAAGGCGGAGATACCCTCGGTTGTGGGGAT
TGGAGCAGCTCCAGAGACCAATCTCGATCCGGAAACTAAAACAGACAACA
ATGCCACGCCAAATAATGCTGACCAGCGCAAGTTCTATGTGGACACCAAC
TACGTGACCGTTCCCCGTTCCAATATGGAGGTGCAGACCTATATGAAAGA
CGGCATGATTGACAACTGGGACCTGTTTGAGAAGGTTATTGATTATGCCT
ACGCCAATGTCATTCAGTCGGAGCCGGAATACCATCCCGTGCTCTTTTCC
GAGGCATCGTGGAATGTCCGCAACAACCGCGAGAAGCTAACCGAGCTTAT
GTTCGAGAAGTACAATGTTCCAGCCTTCTTTCTGGTAAAGAACGCCGTTC
TGGCTGCCTTCTCCAGCGGGCGGGCCACCGCTTTGGTTGTCGATAGTGGA
GCCACCCACACCTCGGCCGTTCCCGTCCATGAGGGCTATGTCCTATCCCA
GGCGGTGGTTAAGTCACCCCTGGGTGGAGACTTCCTTTCACGACAGTGCC
GCCAGCATCTGGAGAAGCACGGCATTGATCTGTCGCCGGTATACAAGATT
GCCTCCAAAGACGTTGTTAAGGAGCGCGACAACGGACGCTTCACGCTGCG
CAAACTGCCAGAGAACCTAACTCAGTCGTGGCAAAACTACATGTTGCAGC
TCATGATGCAAGACTTTCAGATGAATGTGCTGCAGGTCCTAGAAAATCCG
TTCGACGAACGGGTTGCTGCTCAAATCCCGACGGTACACTATGAGTTTCC
TAATGGTTATCATCAGGACTTTGGCTCTGAGCGGTTCAAGATAGCCGAGA
GTCTCTTTGACAATGCAATGCTGGGAGCTGGCCAATTGGCGTCCACCAGT
GTGGGCATGTGTGATGCGGATGTGCGGCTGTCACTTTTCGGCTCAGTTGT
CGTTACTGGTGGCAATACCCTTCTGCAAGGCTTTCCGGAGCGCCTAAATC
GCGATCTCCAGCTGCGTGCCCCCTCAAATACGCGCCTAAAAATGATTTCT
GCCAATGGCAGCGTGGAGCGAAGATTTGGAGCCTGGATTGGCGGCTCTAT
TCTAGCCAGCATAGGTACTTTCCAACAGATGTGGATATCGTCGCAGGAGT
ACGAAGAGGCCGGCAAGAGCCAAGTCGAGCGGAAGTGTCCGTAAAAGCTT
TCTAGACCAT
BS08173.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bap55-RA | 1278 | CG6546-PA | 1..1278 | 17..1294 | 6390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bap55-RA | 1473 | CG6546-RA | 124..1401 | 17..1294 | 6390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17429718..17430562 | 1060..216 | 4225 | 100 | Minus |
| 2R | 25286936 | 2R | 17429425..17429661 | 1294..1058 | 1185 | 100 | Minus |
| 2R | 25286936 | 2R | 17430642..17430840 | 215..17 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:39:38 has no hits.
BS08173.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:04 Download gff for
BS08173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 1..1278 | 17..1294 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:08 Download gff for
BS08173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 96..1373 | 17..1294 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:16 Download gff for
BS08173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 124..1399 | 17..1292 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:04 Download gff for
BS08173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 96..1373 | 17..1294 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:52 Download gff for
BS08173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 124..1399 | 17..1292 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:52 Download gff for
BS08173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17429427..17429660 | 1059..1292 | 100 | <- | Minus |
| 2R | 17429720..17430562 | 216..1058 | 100 | <- | Minus |
| 2R | 17430642..17430840 | 17..215 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:16 Download gff for
BS08173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13316932..13317165 | 1059..1292 | 100 | <- | Minus |
| arm_2R | 13317225..13318067 | 216..1058 | 100 | <- | Minus |
| arm_2R | 13318147..13318345 | 17..215 | 100 | | Minus |
BS08173.pep Sequence
Translation from 16 to 1293
> BS08173.pep
MSGGTMLYGGDEIGALVFDPGHHSLRVGYAQEDSPKAEIPSVVGIGAAPE
TNLDPETKTDNNATPNNADQRKFYVDTNYVTVPRSNMEVQTYMKDGMIDN
WDLFEKVIDYAYANVIQSEPEYHPVLFSEASWNVRNNREKLTELMFEKYN
VPAFFLVKNAVLAAFSSGRATALVVDSGATHTSAVPVHEGYVLSQAVVKS
PLGGDFLSRQCRQHLEKHGIDLSPVYKIASKDVVKERDNGRFTLRKLPEN
LTQSWQNYMLQLMMQDFQMNVLQVLENPFDERVAAQIPTVHYEFPNGYHQ
DFGSERFKIAESLFDNAMLGAGQLASTSVGMCDADVRLSLFGSVVVTGGN
TLLQGFPERLNRDLQLRAPSNTRLKMISANGSVERRFGAWIGGSILASIG
TFQQMWISSQEYEEAGKSQVERKCP*
BS08173.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bap55-PA | 425 | CG6546-PA | 1..425 | 1..425 | 2214 | 100 | Plus |
| Act87E-PC | 376 | CG18290-PC | 4..375 | 11..424 | 581 | 32.9 | Plus |
| Act87E-PB | 376 | CG18290-PB | 4..375 | 11..424 | 581 | 32.9 | Plus |
| Act87E-PA | 376 | CG18290-PA | 4..375 | 11..424 | 581 | 32.9 | Plus |
| Act42A-PA | 376 | CG12051-PA | 4..375 | 11..424 | 577 | 32.2 | Plus |
