Clone BS08174 Report

Search the DGRC for BS08174

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:81
Well:74
Vector:pDNR-Dual
Associated Gene/Transcriptrumi-RA
Protein status:BS08174.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08174.3prime Sequence

885 bp (837 high quality bases) assembled on 2006-01-06

> BS08174.3prime
ATGGTCTAGAAAGCTTCTACAGCTCATCCTTTTTAGGCCCTATGTAAATA
AGTTGATCCTCCGGCTTAACCTCGTATTGCAGCAGCTTCACATATCGCTT
GAGCAGCTTGCGCCAATAGCACTTGATGTCCTTCATGCGCAAATGCTCCC
AGATGAAGTCGTATCCACGCTGAGCGATCTCCTGGGCCAGCGCATCGTTT
TTCTTGAAAAAGGACAAGATGTGCTCGTACTCCTGCTGACTGGGGTAGCT
CTTGAGCGGCACATAGTGCACCCAGGGCTTTAGTTGGTCGTAGAAGAACT
CCTGCCACTCGTCGCCCACATGGAAGACCAGCGACTTGCAGAGGAACAAG
TGCTTCAGACGAAAACTGGCGGCCACACCGCGGAAATTGAACAAGTACTT
GTACTTGCAGTGGTCCTCGAAGGACACCTCATCAGCAGCCGGTGCGTCCA
GTGTATCCTTAGGCGACTTCCAGCCCTGATTTTTGGTGTATTGAGCCTCG
ACTAGCTCCGGATTGCGGCGCGAGAGCAGAATAAGAGAATCACGTTCGTC
CGAGGTGCGTGAACCGCGAAAGAAGCCCAGACTGCGTTTCTGTGACCAGG
GTATAGCTGCCGCTCGCTTCTCCAGCTTCTCGCGCATCTGATCCCAGCGT
CCAATGCCACGAGGATGGAGCTTGGTGGCCGGTCCTCCGGCCCAGAATGT
CCACGCTGGATACATGATGTCGCGGTACTCCTTTGTCTTGGAGAAGGAGA
AGACGGGACCACCAGCCGCGTTACCCCACGCCGCATTCAGCTGCGGATAG
TCCCTGGTATTGATGATCAAGTCCATGTCGGGCAGCGTAGCCACCAGCGG
CAGCAGGAAGTGTTCAATGGCCTCACAGCGGGCTG

BS08174.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG31152-PA 1236 CG31152-RA 368..1236 885..17 4320 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
rumi-RB 1530 CG31152-RB 437..1305 885..17 4330 99.9 Minus
rumi-RA 1534 CG31152-RA 441..1309 885..17 4330 99.9 Minus
CG31139-RC 1308 CG31139-RC 857..990 400..267 325 83.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22749239..22750107 17..885 4330 99.9 Plus
3R 32079331 3R 22748008..22748141 267..400 325 82.8 Plus
Blast to na_te.dros performed on 2015-02-06 11:08:36 has no hits.

BS08174.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:59 Download gff for BS08174.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31152-PA 368..1236 17..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:33:46 Download gff for BS08174.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31152-PA 368..1236 17..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:33:11 Download gff for BS08174.3prime
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 441..1309 17..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:46 Download gff for BS08174.3prime
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 441..1309 17..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:46 Download gff for BS08174.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22749239..22750107 17..885 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:33:11 Download gff for BS08174.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18574961..18575829 17..885 99   Plus

BS08174.5prime Sequence

893 bp (789 high quality bases) assembled on 2006-01-06

> BS08174.5prime
GAAGTTATCAGTCGACATGCTAATAAATCATTTAATAGTCGTATTATTAA
TTAGTTTGGTAGGAACAGGAGGTGCAGAAGATGACGGACTTTGCAGTGCC
GATCAAAAATCCTGTGCACAAAGTGAACCCGACCAAATAAACGAGGATGA
ATTTAGCTTCAAGATACGTCGCCAGATCGAAAAAGCCAATGCCGACTACA
AGCCGTGCAGCAGTGATCCCCAGGACAGCGACTGCTCCTGCCACGCAAAT
GTTCTGAAACGGGATCTCGCGCCCTACAAGTCAACAGGTGTCACCCGGCA
GATGATCGAGAGTTCAGCGCGTTACGGCACCAAATACAAGATCTACGGAC
ATCGCCTGTACCGGGATGCCAACTGCATGTTCCCAGCCCGCTGTGAGGGC
ATTGAACACTTCCTGCTGCCGCTGGTGGCTACGCTGCCCGACATGGACTT
GATCATCAATACCAGGGACTATCCGCAGCTGAATGCGGCGTGGGGTAACG
CGGCTGGTGGTCCCGTCTTCTCCTTCTCCAAGACAAAGGAGTACCGCGAC
ATCATGTATCCAGCGTGGACATTCTGGGCCGGAGGACCGGCCACCAAGCT
CCATCCTCGTGGCATTGGACGCTGGGATCAGATGCGCGAGAAGCTGGAGA
AGCGAGCGGCAGCTATACCCTGGTCACAGAAACGCAGTCTGGGCTTCTTT
CGCGGTTCACGCACCTCGGACGAACGTGATTCTCTTATTCTGCTCTCGCG
CCGCAATCCGGAGCTAGTCGAGGCTCAATACACCAAAAATCAGGGCTGGG
AGTCGCCTAAGGATACACTGGACGCACCGGCTGCTGATGAGGTGTCCTTC
GAGGACCACTGCAAGTACAAGTACTTGTTTCATTTCCGCGGTG

BS08174.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31152-PA 1236 CG31152-RA 1..877 17..893 4310 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
rumi-RA 1534 CG31152-RA 74..950 17..893 4340 99.7 Plus
rumi-RB 1530 CG31152-RB 74..946 17..893 4270 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22749598..22750338 893..153 3660 99.6 Minus
3R 32079331 3R 22750389..22750524 152..17 680 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:25:13 has no hits.

BS08174.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:00 Download gff for BS08174.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31152-PA 1..877 17..893 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:33:48 Download gff for BS08174.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31152-PA 1..877 17..893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:14:36 Download gff for BS08174.5prime
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 67..950 9..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:42:52 Download gff for BS08174.5prime
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 67..950 9..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:42:52 Download gff for BS08174.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22749598..22750338 153..893 99 <- Minus
3R 22750389..22750531 9..152 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:14:36 Download gff for BS08174.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18575320..18576060 153..893 99 <- Minus
arm_3R 18576111..18576253 9..152 97   Minus

BS08174.complete Sequence

1268 bp (1268 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636123

> BS08174.complete
GAAGTTATCAGTCGACATGCTAATAAATCATTTAATAGTCGTATTATTAA
TTAGTTTGGTAGGAACAGGAGGTGCAGAAGATGACGGACTTTGCAGTGCC
GATCAAAAATCCTGTGCACAAAGTGAACCCGACCAAATAAACGAGGATGA
ATTTAGCTTCAAGATACGTCGCCAGATCGAAAAAGCCAATGCCGACTACA
AGCCGTGCAGCAGTGATCCCCAGGACAGCGACTGCTCCTGCCACGCAAAT
GTTCTGAAACGGGATCTCGCGCCCTACAAGTCAACAGGTGTCACCCGGCA
GATGATCGAGAGTTCAGCGCGTTACGGCACCAAATACAAGATCTACGGAC
ATCGCCTGTACCGGGATGCCAACTGCATGTTCCCAGCCCGCTGTGAGGGC
ATTGAACACTTCCTGCTGCCGCTGGTGGCTACGCTGCCCGACATGGACTT
GATCATCAATACCAGGGACTATCCGCAGCTGAATGCGGCGTGGGGTAACG
CGGCTGGTGGTCCCGTCTTCTCCTTCTCCAAGACAAAGGAGTACCGCGAC
ATCATGTATCCAGCGTGGACATTCTGGGCCGGAGGACCGGCCACCAAGCT
CCATCCTCGTGGCATTGGACGCTGGGATCAGATGCGCGAGAAGCTGGAGA
AGCGAGCGGCAGCTATACCCTGGTCACAGAAACGCAGTCTGGGCTTCTTT
CGCGGTTCACGCACCTCGGACGAACGTGATTCTCTTATTCTGCTCTCGCG
CCGCAATCCGGAGCTAGTCGAGGCTCAATACACCAAAAATCAGGGCTGGA
AGTCGCCTAAGGATACACTGGACGCACCGGCTGCTGATGAGGTGTCCTTC
GAGGACCACTGCAAGTACAAGTACTTGTTCAATTTCCGCGGTGTGGCCGC
CAGTTTTCGTCTGAAGCACTTGTTCCTCTGCAAGTCGCTGGTCTTCCATG
TGGGCGACGAGTGGCAGGAGTTCTTCTACGACCAACTAAAGCCCTGGGTG
CACTATGTGCCGCTCAAGAGCTACCCCAGTCAGCAGGAGTACGAGCACAT
CTTGTCCTTTTTCAAGAAAAACGATGCGCTGGCCCAGGAGATCGCTCAGC
GTGGATACGACTTCATCTGGGAGCATTTGCGCATGAAGGACATCAAGTGC
TATTGGCGCAAGCTGCTCAAGCGATATGTGAAGCTGCTGCAATACGAGGT
TAAGCCGGAGGATCAACTTATTTACATAGGGCCTAAAAAGGATGAGCTGT
AGAAGCTTTCTAGACCAT

BS08174.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
rumi-RA 1236 CG31152-PA 1..1236 17..1252 6180 100 Plus
rumi-RB 951 CG31152-PB 1..951 302..1252 4755 100 Plus
CG31139-RC 939 CG31139-PC 541..674 869..1002 325 82.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
rumi-RA 1534 CG31152-RA 74..1309 17..1252 6180 100 Plus
rumi-RB 1530 CG31152-RB 74..1305 17..1252 6085 99.7 Plus
CG31139-RC 1308 CG31139-RC 857..990 869..1002 325 82.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22749239..22750338 1252..153 5500 100 Minus
3R 32079331 3R 22750389..22750524 152..17 680 100 Minus
3R 32079331 3R 22748008..22748141 1002..869 325 82.8 Minus
Blast to na_te.dros performed on 2014-11-27 14:01:41 has no hits.

BS08174.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:05 Download gff for BS08174.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 1..1236 17..1252 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:10 Download gff for BS08174.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 31..1273 9..1252 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:29 Download gff for BS08174.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 74..1309 17..1252 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:05 Download gff for BS08174.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 31..1273 9..1252 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:15 Download gff for BS08174.complete
Subject Subject Range Query Range Percent Splice Strand
rumi-RA 74..1309 17..1252 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:15 Download gff for BS08174.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22749239..22750338 153..1252 100 <- Minus
3R 22750389..22750524 17..152 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:29 Download gff for BS08174.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18574961..18576060 153..1252 100 <- Minus
arm_3R 18576111..18576246 17..152 100   Minus

BS08174.pep Sequence

Translation from 16 to 1251

> BS08174.pep
MLINHLIVVLLISLVGTGGAEDDGLCSADQKSCAQSEPDQINEDEFSFKI
RRQIEKANADYKPCSSDPQDSDCSCHANVLKRDLAPYKSTGVTRQMIESS
ARYGTKYKIYGHRLYRDANCMFPARCEGIEHFLLPLVATLPDMDLIINTR
DYPQLNAAWGNAAGGPVFSFSKTKEYRDIMYPAWTFWAGGPATKLHPRGI
GRWDQMREKLEKRAAAIPWSQKRSLGFFRGSRTSDERDSLILLSRRNPEL
VEAQYTKNQGWKSPKDTLDAPAADEVSFEDHCKYKYLFNFRGVAASFRLK
HLFLCKSLVFHVGDEWQEFFYDQLKPWVHYVPLKSYPSQQEYEHILSFFK
KNDALAQEIAQRGYDFIWEHLRMKDIKCYWRKLLKRYVKLLQYEVKPEDQ
LIYIGPKKDEL*

BS08174.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
rumi-PA 411 CG31152-PA 1..411 1..411 2222 100 Plus
rumi-PB 316 CG31152-PB 1..316 96..411 1724 100 Plus
CG31139-PA 397 CG31139-PA 22..389 26..408 952 47.4 Plus
CG31139-PC 312 CG31139-PC 1..304 96..408 870 50.6 Plus