Clone Sequence Records
BS08174.3prime Sequence
885 bp (837 high quality bases) assembled on 2006-01-06
> BS08174.3prime
ATGGTCTAGAAAGCTTCTACAGCTCATCCTTTTTAGGCCCTATGTAAATA
AGTTGATCCTCCGGCTTAACCTCGTATTGCAGCAGCTTCACATATCGCTT
GAGCAGCTTGCGCCAATAGCACTTGATGTCCTTCATGCGCAAATGCTCCC
AGATGAAGTCGTATCCACGCTGAGCGATCTCCTGGGCCAGCGCATCGTTT
TTCTTGAAAAAGGACAAGATGTGCTCGTACTCCTGCTGACTGGGGTAGCT
CTTGAGCGGCACATAGTGCACCCAGGGCTTTAGTTGGTCGTAGAAGAACT
CCTGCCACTCGTCGCCCACATGGAAGACCAGCGACTTGCAGAGGAACAAG
TGCTTCAGACGAAAACTGGCGGCCACACCGCGGAAATTGAACAAGTACTT
GTACTTGCAGTGGTCCTCGAAGGACACCTCATCAGCAGCCGGTGCGTCCA
GTGTATCCTTAGGCGACTTCCAGCCCTGATTTTTGGTGTATTGAGCCTCG
ACTAGCTCCGGATTGCGGCGCGAGAGCAGAATAAGAGAATCACGTTCGTC
CGAGGTGCGTGAACCGCGAAAGAAGCCCAGACTGCGTTTCTGTGACCAGG
GTATAGCTGCCGCTCGCTTCTCCAGCTTCTCGCGCATCTGATCCCAGCGT
CCAATGCCACGAGGATGGAGCTTGGTGGCCGGTCCTCCGGCCCAGAATGT
CCACGCTGGATACATGATGTCGCGGTACTCCTTTGTCTTGGAGAAGGAGA
AGACGGGACCACCAGCCGCGTTACCCCACGCCGCATTCAGCTGCGGATAG
TCCCTGGTATTGATGATCAAGTCCATGTCGGGCAGCGTAGCCACCAGCGG
CAGCAGGAAGTGTTCAATGGCCTCACAGCGGGCTG
BS08174.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31152-PA | 1236 | CG31152-RA | 368..1236 | 885..17 | 4320 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:08:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rumi-RB | 1530 | CG31152-RB | 437..1305 | 885..17 | 4330 | 99.9 | Minus |
rumi-RA | 1534 | CG31152-RA | 441..1309 | 885..17 | 4330 | 99.9 | Minus |
CG31139-RC | 1308 | CG31139-RC | 857..990 | 400..267 | 325 | 83.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22749239..22750107 | 17..885 | 4330 | 99.9 | Plus |
3R | 32079331 | 3R | 22748008..22748141 | 267..400 | 325 | 82.8 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:08:36 has no hits.
BS08174.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:59 Download gff for
BS08174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31152-PA | 368..1236 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:33:46 Download gff for
BS08174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31152-PA | 368..1236 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:33:11 Download gff for
BS08174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rumi-RA | 441..1309 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:46 Download gff for
BS08174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rumi-RA | 441..1309 | 17..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:46 Download gff for
BS08174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22749239..22750107 | 17..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:33:11 Download gff for
BS08174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18574961..18575829 | 17..885 | 99 | | Plus |
BS08174.5prime Sequence
893 bp (789 high quality bases) assembled on 2006-01-06
> BS08174.5prime
GAAGTTATCAGTCGACATGCTAATAAATCATTTAATAGTCGTATTATTAA
TTAGTTTGGTAGGAACAGGAGGTGCAGAAGATGACGGACTTTGCAGTGCC
GATCAAAAATCCTGTGCACAAAGTGAACCCGACCAAATAAACGAGGATGA
ATTTAGCTTCAAGATACGTCGCCAGATCGAAAAAGCCAATGCCGACTACA
AGCCGTGCAGCAGTGATCCCCAGGACAGCGACTGCTCCTGCCACGCAAAT
GTTCTGAAACGGGATCTCGCGCCCTACAAGTCAACAGGTGTCACCCGGCA
GATGATCGAGAGTTCAGCGCGTTACGGCACCAAATACAAGATCTACGGAC
ATCGCCTGTACCGGGATGCCAACTGCATGTTCCCAGCCCGCTGTGAGGGC
ATTGAACACTTCCTGCTGCCGCTGGTGGCTACGCTGCCCGACATGGACTT
GATCATCAATACCAGGGACTATCCGCAGCTGAATGCGGCGTGGGGTAACG
CGGCTGGTGGTCCCGTCTTCTCCTTCTCCAAGACAAAGGAGTACCGCGAC
ATCATGTATCCAGCGTGGACATTCTGGGCCGGAGGACCGGCCACCAAGCT
CCATCCTCGTGGCATTGGACGCTGGGATCAGATGCGCGAGAAGCTGGAGA
AGCGAGCGGCAGCTATACCCTGGTCACAGAAACGCAGTCTGGGCTTCTTT
CGCGGTTCACGCACCTCGGACGAACGTGATTCTCTTATTCTGCTCTCGCG
CCGCAATCCGGAGCTAGTCGAGGCTCAATACACCAAAAATCAGGGCTGGG
AGTCGCCTAAGGATACACTGGACGCACCGGCTGCTGATGAGGTGTCCTTC
GAGGACCACTGCAAGTACAAGTACTTGTTTCATTTCCGCGGTG
BS08174.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31152-PA | 1236 | CG31152-RA | 1..877 | 17..893 | 4310 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:25:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rumi-RA | 1534 | CG31152-RA | 74..950 | 17..893 | 4340 | 99.7 | Plus |
rumi-RB | 1530 | CG31152-RB | 74..946 | 17..893 | 4270 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22749598..22750338 | 893..153 | 3660 | 99.6 | Minus |
3R | 32079331 | 3R | 22750389..22750524 | 152..17 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:25:13 has no hits.
BS08174.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:00 Download gff for
BS08174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31152-PA | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:33:48 Download gff for
BS08174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31152-PA | 1..877 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:14:36 Download gff for
BS08174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rumi-RA | 67..950 | 9..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:42:52 Download gff for
BS08174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rumi-RA | 67..950 | 9..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:42:52 Download gff for
BS08174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22749598..22750338 | 153..893 | 99 | <- | Minus |
3R | 22750389..22750531 | 9..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:14:36 Download gff for
BS08174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18575320..18576060 | 153..893 | 99 | <- | Minus |
arm_3R | 18576111..18576253 | 9..152 | 97 | | Minus |
BS08174.complete Sequence
1268 bp (1268 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636123
> BS08174.complete
GAAGTTATCAGTCGACATGCTAATAAATCATTTAATAGTCGTATTATTAA
TTAGTTTGGTAGGAACAGGAGGTGCAGAAGATGACGGACTTTGCAGTGCC
GATCAAAAATCCTGTGCACAAAGTGAACCCGACCAAATAAACGAGGATGA
ATTTAGCTTCAAGATACGTCGCCAGATCGAAAAAGCCAATGCCGACTACA
AGCCGTGCAGCAGTGATCCCCAGGACAGCGACTGCTCCTGCCACGCAAAT
GTTCTGAAACGGGATCTCGCGCCCTACAAGTCAACAGGTGTCACCCGGCA
GATGATCGAGAGTTCAGCGCGTTACGGCACCAAATACAAGATCTACGGAC
ATCGCCTGTACCGGGATGCCAACTGCATGTTCCCAGCCCGCTGTGAGGGC
ATTGAACACTTCCTGCTGCCGCTGGTGGCTACGCTGCCCGACATGGACTT
GATCATCAATACCAGGGACTATCCGCAGCTGAATGCGGCGTGGGGTAACG
CGGCTGGTGGTCCCGTCTTCTCCTTCTCCAAGACAAAGGAGTACCGCGAC
ATCATGTATCCAGCGTGGACATTCTGGGCCGGAGGACCGGCCACCAAGCT
CCATCCTCGTGGCATTGGACGCTGGGATCAGATGCGCGAGAAGCTGGAGA
AGCGAGCGGCAGCTATACCCTGGTCACAGAAACGCAGTCTGGGCTTCTTT
CGCGGTTCACGCACCTCGGACGAACGTGATTCTCTTATTCTGCTCTCGCG
CCGCAATCCGGAGCTAGTCGAGGCTCAATACACCAAAAATCAGGGCTGGA
AGTCGCCTAAGGATACACTGGACGCACCGGCTGCTGATGAGGTGTCCTTC
GAGGACCACTGCAAGTACAAGTACTTGTTCAATTTCCGCGGTGTGGCCGC
CAGTTTTCGTCTGAAGCACTTGTTCCTCTGCAAGTCGCTGGTCTTCCATG
TGGGCGACGAGTGGCAGGAGTTCTTCTACGACCAACTAAAGCCCTGGGTG
CACTATGTGCCGCTCAAGAGCTACCCCAGTCAGCAGGAGTACGAGCACAT
CTTGTCCTTTTTCAAGAAAAACGATGCGCTGGCCCAGGAGATCGCTCAGC
GTGGATACGACTTCATCTGGGAGCATTTGCGCATGAAGGACATCAAGTGC
TATTGGCGCAAGCTGCTCAAGCGATATGTGAAGCTGCTGCAATACGAGGT
TAAGCCGGAGGATCAACTTATTTACATAGGGCCTAAAAAGGATGAGCTGT
AGAAGCTTTCTAGACCAT
BS08174.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rumi-RA | 1236 | CG31152-PA | 1..1236 | 17..1252 | 6180 | 100 | Plus |
rumi-RB | 951 | CG31152-PB | 1..951 | 302..1252 | 4755 | 100 | Plus |
CG31139-RC | 939 | CG31139-PC | 541..674 | 869..1002 | 325 | 82.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rumi-RA | 1534 | CG31152-RA | 74..1309 | 17..1252 | 6180 | 100 | Plus |
rumi-RB | 1530 | CG31152-RB | 74..1305 | 17..1252 | 6085 | 99.7 | Plus |
CG31139-RC | 1308 | CG31139-RC | 857..990 | 869..1002 | 325 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22749239..22750338 | 1252..153 | 5500 | 100 | Minus |
3R | 32079331 | 3R | 22750389..22750524 | 152..17 | 680 | 100 | Minus |
3R | 32079331 | 3R | 22748008..22748141 | 1002..869 | 325 | 82.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:01:41 has no hits.
BS08174.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:05 Download gff for
BS08174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rumi-RA | 1..1236 | 17..1252 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:10 Download gff for
BS08174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rumi-RA | 31..1273 | 9..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:29 Download gff for
BS08174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rumi-RA | 74..1309 | 17..1252 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:05 Download gff for
BS08174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rumi-RA | 31..1273 | 9..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:15 Download gff for
BS08174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rumi-RA | 74..1309 | 17..1252 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:15 Download gff for
BS08174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22749239..22750338 | 153..1252 | 100 | <- | Minus |
3R | 22750389..22750524 | 17..152 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:29 Download gff for
BS08174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18574961..18576060 | 153..1252 | 100 | <- | Minus |
arm_3R | 18576111..18576246 | 17..152 | 100 | | Minus |
BS08174.pep Sequence
Translation from 16 to 1251
> BS08174.pep
MLINHLIVVLLISLVGTGGAEDDGLCSADQKSCAQSEPDQINEDEFSFKI
RRQIEKANADYKPCSSDPQDSDCSCHANVLKRDLAPYKSTGVTRQMIESS
ARYGTKYKIYGHRLYRDANCMFPARCEGIEHFLLPLVATLPDMDLIINTR
DYPQLNAAWGNAAGGPVFSFSKTKEYRDIMYPAWTFWAGGPATKLHPRGI
GRWDQMREKLEKRAAAIPWSQKRSLGFFRGSRTSDERDSLILLSRRNPEL
VEAQYTKNQGWKSPKDTLDAPAADEVSFEDHCKYKYLFNFRGVAASFRLK
HLFLCKSLVFHVGDEWQEFFYDQLKPWVHYVPLKSYPSQQEYEHILSFFK
KNDALAQEIAQRGYDFIWEHLRMKDIKCYWRKLLKRYVKLLQYEVKPEDQ
LIYIGPKKDEL*
BS08174.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rumi-PA | 411 | CG31152-PA | 1..411 | 1..411 | 2222 | 100 | Plus |
rumi-PB | 316 | CG31152-PB | 1..316 | 96..411 | 1724 | 100 | Plus |
CG31139-PA | 397 | CG31139-PA | 22..389 | 26..408 | 952 | 47.4 | Plus |
CG31139-PC | 312 | CG31139-PC | 1..304 | 96..408 | 870 | 50.6 | Plus |