Clone Sequence Records
BS08180.3prime Sequence
916 bp (847 high quality bases) assembled on 2006-01-06
> BS08180.3prime
ATGGTCTAGAAAGCTTTTAGAACAGCAGCGTGCCCATGCCGCCCATTTCG
GACTGCTCCTTAACGAAAATCTCAAAGTATTGGTAGATGATGGTCACAGC
CAACAGGATACCCGTACCGGAGCCGATGGCCCCCAGGAAGTCGGCCATCA
CAGACAGAGCTCCGATGCAGAGACCACCGAAAGCAGCCGCCGTTGGGATG
TAGCGGTTGAGCTCGTGGATCATCGAGTTCTCGCGATGGCCACGCATCAC
CATGTGCTGCTCCTTCAGCTGCTTGGCAACATCCTTGGCTGAGCTGCCGG
ACACATCGATCCAGGTCTTGGAGAAGAAGGCGCACGAGCCCAACATGAAG
ACAATGTAGAGCAACGCGTGAATGGGGTCGGTCAGGATGTGGCCCACGCT
CTCTGGGGGCGAAAGATAGTAGCACAGACCACCGATGGGATAGGAGCGAG
CCGGGCCGCCGCCTCCAACATCAGCCCACACACCCAGAAGGTTAATGAAG
AAGTTGCCCTGGAACTTGACAGCCAGCATCTGGGAGATGACGTACAAGTT
GGACACGAGCGCAGACTGCAGGATGATGGGAATGTTGGAGGTGTAGAACA
GCTTGATGGGATAGCTGCTGTACTGGCCGCGGTAACGGGCGCTCTTGATG
GGTAGGTCCACGCGGAAGCCTTGGAAGTATATGACCACGGCGAACACCAG
CACGGTGGCCAGCAGGTTCATCAGATTGGGCAGGTTCTGGCGATAGAAGG
CCTCGCGCAGAGCGCGCACCTTATCGTTCCTGGTGGCCATCAGATGGAAC
AGGGCAATCACAGCGCCCTCGAACTCGGTACCGCGTCCCGTCGTCACGGT
GGTGGGGCTGAATGCCTTCCACACAATCGTCTCGCAAATGTTGGTGGCAA
TGAACAGGAAAATTCC
BS08180.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9539-PA | 1431 | Sec61alpha-RA | 532..1431 | 916..17 | 4475 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec61alpha-RB | 2128 | CG9539-RB | 777..1676 | 916..17 | 4485 | 99.9 | Minus |
| Sec61alpha-RA | 2019 | CG9539-RA | 668..1567 | 916..17 | 4485 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:48:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6477969..6478606 | 279..916 | 3175 | 99.8 | Plus |
| 2L | 23513712 | 2L | 6477634..6477897 | 17..280 | 1320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:48:42 has no hits.
BS08180.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:12 Download gff for
BS08180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9539-PA | 532..1431 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:34:03 Download gff for
BS08180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9539-PA | 532..1431 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:42:51 Download gff for
BS08180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 668..1573 | 9..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:45 Download gff for
BS08180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 668..1573 | 9..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:45 Download gff for
BS08180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6477628..6477897 | 9..280 | 98 | <- | Plus |
| 2L | 6477971..6478606 | 281..916 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:42:51 Download gff for
BS08180.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6477628..6477897 | 9..280 | 98 | <- | Plus |
| arm_2L | 6477971..6478606 | 281..916 | 99 | | Plus |
BS08180.5prime Sequence
970 bp (833 high quality bases) assembled on 2006-01-06
> BS08180.5prime
GAAGTTATCAGTCGACATGGGAATCAAGTTCCTGGAAGTTATCAAACCGT
TCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGATCCAATTC
AGGGAGAAAGTGCTATGGACTGCGATCACCCTGTTCATCTTCCTGGTGTG
CTGCCAGATCCCGCTTTTCGGTATCATGAGCTCAGACTCGGCGGATCCCT
TCTACTGGATCCGTGTGATCCTGGCCTCCAACCGTGGTACGCTCATGGAG
CTGGGTATCTCGCCCATCGTGACCTCTGGCCTCATTATGCAGCTGCTGGC
CGGAGCAAAGATCATTGAGGTCGGTGATACGCCCAAGGATCGTGCTCTGT
TCAACGGTGCTCAGAAGCTCTTCGGCATGGTGATCACCATTGGTCAGGCC
ATCGTCTATGTGATGACTGGCATGTACGGCGATCCGTCGGAGATCGGCGC
CGGTGTCTGCCTGCTGATCATCATCCAGCTGTTCGCCGCTGGTTTGATTG
TGCTGCTGCTGGACGAGCTCCTGCAGAAGGGCTATGGACTGGGATCGGGA
ATTTCCCTGTTCATTGCCACCAACATTTGCGAGACGATTGTGTGGAAGGC
ATTCAGCCCCACCACCGTGACGACGGGACGCGGTACCGAGTTCGAGGGCG
CTGTGATTGCCCTGTTCCATCTGATGGCCACCAGGAACGATAAGGTGCGC
GCTCTGCGCGAGGCCTTCTATCGCCAGAACCTGCCCAATCTGATGAACCT
GCTGGCCACCGTGCTGGTGTTCGCCGTGGTCATATACTTCCAAGGCTTCC
GCGTGGACCTACCCATCAAGAGCGCCCGTTACCGCGGCCAGTACAGCAGC
TATCCCATCAAGCTGTTCTACACCTCCAACATTCCCATCATCCTGCAGTC
TGCGCTCGTGTCCAACTTGTACGTCATCTCCCAGATGCTGGCTGTCAAGT
TCCAGGCAACTTCTTCATTA
BS08180.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9539-PA | 1431 | Sec61alpha-RA | 1..940 | 17..956 | 4700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:52:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec61alpha-RB | 2128 | CG9539-RB | 246..1200 | 17..970 | 4750 | 99.9 | Plus |
| Sec61alpha-RA | 2019 | CG9539-RA | 137..1091 | 17..970 | 4750 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6478183..6479064 | 970..90 | 4360 | 99.9 | Minus |
| 2L | 23513712 | 2L | 6480034..6480101 | 91..24 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:52:38 has no hits.
BS08180.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:13 Download gff for
BS08180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9539-PA | 1..954 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:34:04 Download gff for
BS08180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9539-PA | 1..954 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:22:10 Download gff for
BS08180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 128..1090 | 8..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:32:02 Download gff for
BS08180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 128..1090 | 8..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:32:02 Download gff for
BS08180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6478184..6479062 | 92..969 | 99 | <- | Minus |
| 2L | 6480034..6480101 | 24..91 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:22:10 Download gff for
BS08180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6478184..6479062 | 92..969 | 99 | <- | Minus |
| arm_2L | 6480034..6480101 | 24..91 | 100 | <- | Minus |
BS08180.complete Sequence
1463 bp (1463 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636124
> BS08180.complete
GAAGTTATCAGTCGACATGGGAATCAAGTTCCTGGAAGTTATCAAACCGT
TCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGATCCAATTC
AGGGAGAAAGTGCTATGGACTGCGATCACCCTGTTCATCTTCCTGGTGTG
CTGCCAGATCCCGCTTTTCGGTATCATGAGCTCAGACTCGGCGGATCCCT
TCTACTGGATCCGTGTGATCCTGGCCTCCAACCGTGGTACGCTCATGGAG
CTGGGTATCTCGCCCATCGTGACCTCTGGCCTCATTATGCAGCTGCTGGC
CGGAGCAAAGATCATTGAGGTCGGTGATACGCCCAAGGATCGTGCTCTGT
TCAACGGTGCTCAGAAGCTCTTCGGCATGGTGATCACCATTGGTCAGGCC
ATCGTCTATGTGATGACTGGCATGTACGGCGATCCGTCGGAGATCGGCGC
CGGTGTCTGCCTGCTGATCATCATCCAGCTGTTCGCCGCTGGTTTGATTG
TGCTGCTGCTGGACGAGCTCCTGCAGAAGGGCTATGGACTGGGATCGGGA
ATTTCCCTGTTCATTGCCACCAACATTTGCGAGACGATTGTGTGGAAGGC
ATTCAGCCCCACCACCGTGACGACGGGACGCGGTACCGAGTTCGAGGGCG
CTGTGATTGCCCTGTTCCATCTGATGGCCACCAGGAACGATAAGGTGCGC
GCTCTGCGCGAGGCCTTCTATCGCCAGAACCTGCCCAATCTGATGAACCT
GCTGGCCACCGTGCTGGTGTTCGCCGTGGTCATATACTTCCAAGGCTTCC
GCGTGGACCTACCCATCAAGAGCGCCCGTTACCGCGGCCAGTACAGCAGC
TATCCCATCAAGCTGTTCTACACCTCCAACATTCCCATCATCCTGCAGTC
TGCGCTCGTGTCCAACTTGTACGTCATCTCCCAGATGCTGGCTGTCAAGT
TCCAGGGCAACTTCTTCATTAACCTTCTGGGTGTGTGGGCTGATGTTGGA
GGCGGCGGCCCGGCTCGCTCCTATCCCATCGGTGGTCTGTGCTACTATCT
TTCGCCCCCAGAGAGCGTGGGCCACATCCTGACCGACCCCATTCACGCGT
TGCTCTACATTGTCTTCATGTTGGGCTCGTGCGCCTTCTTCTCCAAGACC
TGGATCGATGTGTCCGGCAGCTCAGCCAAGGATGTTGCCAAGCAGCTGAA
GGAGCAGCACATGGTGATGCGTGGCCATCGCGAGAACTCGATGATCCACG
AGCTCAACCGCTACATCCCAACGGCGGCTGCTTTCGGTGGTCTCTGCATC
GGAGCTCTGTCTGTGATGGCCGACTTCCTGGGGGCCATCGGCTCCGGTAC
GGGTATCCTGTTGGCTGTGACCATCATCTACCAATACTTTGAGATTTTCG
TTAAGGAGCAGTCCGAAATGGGCGGCATGGGCACGCTGCTGTTCTAAAAG
CTTTCTAGACCAT
BS08180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec61alpha-RB | 1431 | CG9539-PB | 1..1431 | 17..1447 | 7155 | 100 | Plus |
| Sec61alpha-RA | 1431 | CG9539-PA | 1..1431 | 17..1447 | 7155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec61alpha-RB | 2128 | CG9539-RB | 246..1676 | 17..1447 | 7155 | 100 | Plus |
| Sec61alpha-RA | 2019 | CG9539-RA | 137..1567 | 17..1447 | 7155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:16:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6477969..6479064 | 1185..90 | 5480 | 100 | Minus |
| 2L | 23513712 | 2L | 6477634..6477897 | 1447..1184 | 1320 | 100 | Minus |
| 2L | 23513712 | 2L | 6480034..6480101 | 91..24 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:16:03 has no hits.
BS08180.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:53 Download gff for
BS08180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 1..1431 | 17..1447 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:54 Download gff for
BS08180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 151..1596 | 8..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:00 Download gff for
BS08180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 137..1565 | 17..1445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:53 Download gff for
BS08180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 151..1596 | 8..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:20 Download gff for
BS08180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec61alpha-RA | 137..1565 | 17..1445 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:20 Download gff for
BS08180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6477636..6477897 | 1184..1445 | 100 | <- | Minus |
| 2L | 6477971..6479062 | 92..1183 | 100 | <- | Minus |
| 2L | 6480034..6480106 | 17..91 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:00 Download gff for
BS08180.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6477636..6477897 | 1184..1445 | 100 | <- | Minus |
| arm_2L | 6477971..6479062 | 92..1183 | 100 | <- | Minus |
| arm_2L | 6480034..6480106 | 17..91 | 94 | | Minus |
BS08180.pep Sequence
Translation from 16 to 1446
> BS08180.pep
MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPL
FGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKII
EVGDTPKDRALFNGAQKLFGMVITIGQAIVYVMTGMYGDPSEIGAGVCLL
IIIQLFAAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTT
VTTGRGTEFEGAVIALFHLMATRNDKVRALREAFYRQNLPNLMNLLATVL
VFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN
LYVISQMLAVKFQGNFFINLLGVWADVGGGGPARSYPIGGLCYYLSPPES
VGHILTDPIHALLYIVFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQHMV
MRGHRENSMIHELNRYIPTAAAFGGLCIGALSVMADFLGAIGSGTGILLA
VTIIYQYFEIFVKEQSEMGGMGTLLF*
BS08180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec61alpha-PB | 476 | CG9539-PB | 1..476 | 1..476 | 2430 | 100 | Plus |
| Sec61alpha-PA | 476 | CG9539-PA | 1..476 | 1..476 | 2430 | 100 | Plus |
