Clone BS08182 Report

Search the DGRC for BS08182

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:81
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG3021-RA
Protein status:BS08182.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08182.3prime Sequence

914 bp (833 high quality bases) assembled on 2006-01-06

> BS08182.3prime
ATGGTCTAGAAAGCTTTTAGCTAACCAGATTTGCGGCTTGAGCTTGCTGC
GTCTGTGCGTTTTTTTTCTTTAGGGGATTAGCGCTGAGGATGCGGGCCGA
ACCCAAACAAGCTGTGTCGTCATAGAATACGGCATATTGTCCTGGTGTAA
TAGCTCTTAAAGGAGCGTCCAACTCGACAAGAAAAGTGTTACTGGGAGAG
ATGCTCAGCTGACAGTCCACCAATGGTTTGGTGTGCTGGAATCGAAAGCG
ACACCTCAAGCTGCCAGTGTCCGAAAGAATCTGTTGGGACTTGGAACACA
GCCAGTTGGGCGGATCGACGGCTATGTGGGTGCTGAGAAGGGCGGGATGG
TTGTGGCCAGATGCCACATAGATGGTATTGCTTGCGGCCTCTTTCCTGGC
CACAAAATAGGGCTGAAGGAATGAGCTCAGACGGCACCGCTGGCCCACAG
TCCATTGATGGATGCCCTCGTGGTGGCCGACAACGGCTCCACTGTCGATG
TCTAGGAAGGGACCACGTTTGGAAGTGATGTACTCCTGTATGAAGTCCTT
GAAGTTGCGTTTGCCAACGAAACAAATGCCAGTGCTTTCCTTCTTTTTGG
CCAGTCGCTGGAAGCCAATCTTCTTGGCCAAGTCCTTGACCTGGCTCTTC
TGGAAGTCTCCCAAAGGGAACATCGTGCGTTGCAGAGCCTTTCGGGAAAT
ACCTGCCAAAAAGAATGTCTGGTCCTTGAACGTATCGGCGGGTATTAGCA
AGCGGGCGTCGTTGTTGGAGGCAATCCCCTCCAGGTAGTTGCCCAGACTA
TTCCGGGCGTAGTGACCCGTGGCCACGGCATCGTAGCCGAGATTTTCCAA
GGCGTGCTTGTGAAAGAGGTCAAACTTAATGTGGCGATTGCACAGGATGT
CCGGATTTGGTGTC

BS08182.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3021-PA 1170 CG3021-RA 273..1170 914..17 4490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3021-RA 1412 CG3021-RA 375..1272 914..17 4490 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1027633..1028150 534..17 2590 100 Minus
X 23542271 X 1027165..1027546 914..533 1910 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:59:00 has no hits.

BS08182.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:14 Download gff for BS08182.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3021-PA 273..1170 17..914 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:34:05 Download gff for BS08182.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3021-PA 273..1170 17..914 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:48:22 Download gff for BS08182.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3021-RA 375..1281 9..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:46 Download gff for BS08182.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3021-RA 375..1281 9..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:46 Download gff for BS08182.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1027165..1027546 533..914 100 -> Minus
X 1027635..1028159 9..532 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:48:22 Download gff for BS08182.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 921198..921579 533..914 100 -> Minus
arm_X 921668..922192 9..532 99   Minus

BS08182.5prime Sequence

806 bp (754 high quality bases) assembled on 2006-01-06

> BS08182.5prime
GAAGTTATCAGTCGACATGATTCGCAACGTAGTGGTGGGCGTGTCGGGCG
GCGTGGACAGCGCCGTTTCCGCCCACCTGCTGGCGGAGCAAGGATTCAAG
GTGCTGGGTGTGTTTATGCGCAACTGGGATGAGGCGGACGAAGTGGGTCG
CTGCAGTGGGGAGGCGGATCTGAAGGACGCCGAGTGGGCGTGCCGGCAGC
TCGGCGTGGAGCTGCGTCAGGTGAACTATGTGCGCGAGTACTGGACGGCG
GTGTTCAGCCAGTTTCTGGACGATTACCAAATGGGCTTGACACCAAATCC
GGACATCCTGTGCAATCGCCACATTAAGTTTGACCTCTTTCACAAGCACG
CCTTGGAAAATCTCGGCTACGATGCCGTGGCCACGGGTCACTACGCCCGG
AATAGTCTGGGCAACTACCTGGAGGGGATTGCCTCCAACAACGACGCCCG
CTTGCTAATACCCGCCGATACGTTCAAGGACCAGACATTCTTTTTGGCAG
GTATTTCCCGAAAGGCTCTGCAACGCACGATGTTCCCTTTGGGAGACTTC
CAGAAGAGCCAGGTCAAGGACTTGGCCAAGAAGATTGGCTTCCAGCGACT
GGCCAAAAAGAAGGAAAGCACTGGCATTTGTTTCGTTGGCAAACGCAACT
TCAAGGACTTCATACAGGAGTACATCACTTCCAAACGTGGTCCCTTCCTA
GACATCGACAGTGGAGCCGTTGTCGGCCACCACGAGGGCATCCATCAATG
GACTGTGGGCCAGCGGTGCCGTCTGAGCTCATTCCTTCAGCCCTATTTTG
TGGCCA

BS08182.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3021-PA 1170 CG3021-RA 1..790 17..806 3950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3021-RA 1412 CG3021-RA 103..892 17..806 3950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1026893..1027546 17..670 3270 100 Plus
X 23542271 X 1027633..1027770 669..806 690 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:03:38 has no hits.

BS08182.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:15 Download gff for BS08182.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3021-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:34:07 Download gff for BS08182.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3021-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:27:00 Download gff for BS08182.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3021-RA 103..891 17..805 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:37 Download gff for BS08182.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3021-RA 103..891 17..805 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:37 Download gff for BS08182.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1026893..1027546 17..670 100 -> Plus
X 1027635..1027769 671..805 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:27:00 Download gff for BS08182.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 920926..921579 17..670 100 -> Plus
arm_X 921668..921802 671..805 100   Plus

BS08182.complete Sequence

1202 bp (1202 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636125

> BS08182.complete
GAAGTTATCAGTCGACATGATTCGCAACGTAGTGGTGGGCGTGTCGGGCG
GCGTGGACAGCGCCGTTTCCGCCCACCTGCTGGCGGAGCAAGGATTCAAG
GTGCTGGGTGTGTTTATGCGCAACTGGGATGAGGCGGACGAAGTGGGTCG
CTGCAGTGGGGAGGCGGATCTGAAGGACGCCGAGTGGGCGTGCCGGCAGC
TCGGCGTGGAGCTGCGTCAGGTGAACTATGTGCGCGAGTACTGGACGGCG
GTGTTCAGCCAGTTTCTGGACGATTACCAAATGGGCTTGACACCAAATCC
GGACATCCTGTGCAATCGCCACATTAAGTTTGACCTCTTTCACAAGCACG
CCTTGGAAAATCTCGGCTACGATGCCGTGGCCACGGGTCACTACGCCCGG
AATAGTCTGGGCAACTACCTGGAGGGGATTGCCTCCAACAACGACGCCCG
CTTGCTAATACCCGCCGATACGTTCAAGGACCAGACATTCTTTTTGGCAG
GTATTTCCCGAAAGGCTCTGCAACGCACGATGTTCCCTTTGGGAGACTTC
CAGAAGAGCCAGGTCAAGGACTTGGCCAAGAAGATTGGCTTCCAGCGACT
GGCCAAAAAGAAGGAAAGCACTGGCATTTGTTTCGTTGGCAAACGCAACT
TCAAGGACTTCATACAGGAGTACATCACTTCCAAACGTGGTCCCTTCCTA
GACATCGACAGTGGAGCCGTTGTCGGCCACCACGAGGGCATCCATCAATG
GACTGTGGGCCAGCGGTGCCGTCTGAGCTCATTCCTTCAGCCCTATTTTG
TGGCCAGGAAAGAGGCCGCAAGCAATACCATCTATGTGGCATCTGGCCAC
AACCATCCCGCCCTTCTCAGCACCCACATAGCCGTCGATCCGCCCAACTG
GCTGTGTTCCAAGTCCCAACAGATTCTTTCGGACACTGGCAGCTTGAGGT
GTCGCTTTCGATTCCAGCACACCAAACCATTGGTGGACTGTCAGCTGAGC
ATCTCTCCCAGTAACACTTTTCTTGTCGAGTTGGACGCTCCTTTAAGAGC
TATTACACCAGGACAATATGCCGTATTCTATGACGACACAGCTTGTTTGG
GTTCGGCCCGCATCCTCAGCGCTAATCCCCTAAAGAAAAAAAACGCACAG
ACGCAGCAAGCTCAAGCCGCAAATCTGGTTAGCTAAAAGCTTTCTAGACC
AT

BS08182.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3021-RA 1170 CG3021-PA 1..1170 17..1186 5850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3021-RA 1412 CG3021-RA 103..1272 17..1186 5850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1026893..1027546 17..670 3270 100 Plus
X 23542271 X 1027633..1028150 669..1186 2590 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:23:54 has no hits.

BS08182.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:54 Download gff for BS08182.complete
Subject Subject Range Query Range Percent Splice Strand
CG3021-RA 1..1170 17..1186 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:56 Download gff for BS08182.complete
Subject Subject Range Query Range Percent Splice Strand
CG3021-RA 37..1215 17..1194 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:28 Download gff for BS08182.complete
Subject Subject Range Query Range Percent Splice Strand
CG3021-RA 103..1270 17..1184 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:54 Download gff for BS08182.complete
Subject Subject Range Query Range Percent Splice Strand
CG3021-RA 37..1215 17..1194 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:33 Download gff for BS08182.complete
Subject Subject Range Query Range Percent Splice Strand
CG3021-RA 103..1270 17..1184 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:33 Download gff for BS08182.complete
Subject Subject Range Query Range Percent Splice Strand
X 1026893..1027546 17..670 100 -> Plus
X 1027635..1028148 671..1184 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:28 Download gff for BS08182.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 920926..921579 17..670 100 -> Plus
arm_X 921668..922181 671..1184 100   Plus

BS08182.pep Sequence

Translation from 16 to 1185

> BS08182.pep
MIRNVVVGVSGGVDSAVSAHLLAEQGFKVLGVFMRNWDEADEVGRCSGEA
DLKDAEWACRQLGVELRQVNYVREYWTAVFSQFLDDYQMGLTPNPDILCN
RHIKFDLFHKHALENLGYDAVATGHYARNSLGNYLEGIASNNDARLLIPA
DTFKDQTFFLAGISRKALQRTMFPLGDFQKSQVKDLAKKIGFQRLAKKKE
STGICFVGKRNFKDFIQEYITSKRGPFLDIDSGAVVGHHEGIHQWTVGQR
CRLSSFLQPYFVARKEAASNTIYVASGHNHPALLSTHIAVDPPNWLCSKS
QQILSDTGSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQ
YAVFYDDTACLGSARILSANPLKKKNAQTQQAQAANLVS*

BS08182.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3021-PA 389 CG3021-PA 1..389 1..389 2043 100 Plus