Clone Sequence Records
BS08182.3prime Sequence
914 bp (833 high quality bases) assembled on 2006-01-06
> BS08182.3prime
ATGGTCTAGAAAGCTTTTAGCTAACCAGATTTGCGGCTTGAGCTTGCTGC
GTCTGTGCGTTTTTTTTCTTTAGGGGATTAGCGCTGAGGATGCGGGCCGA
ACCCAAACAAGCTGTGTCGTCATAGAATACGGCATATTGTCCTGGTGTAA
TAGCTCTTAAAGGAGCGTCCAACTCGACAAGAAAAGTGTTACTGGGAGAG
ATGCTCAGCTGACAGTCCACCAATGGTTTGGTGTGCTGGAATCGAAAGCG
ACACCTCAAGCTGCCAGTGTCCGAAAGAATCTGTTGGGACTTGGAACACA
GCCAGTTGGGCGGATCGACGGCTATGTGGGTGCTGAGAAGGGCGGGATGG
TTGTGGCCAGATGCCACATAGATGGTATTGCTTGCGGCCTCTTTCCTGGC
CACAAAATAGGGCTGAAGGAATGAGCTCAGACGGCACCGCTGGCCCACAG
TCCATTGATGGATGCCCTCGTGGTGGCCGACAACGGCTCCACTGTCGATG
TCTAGGAAGGGACCACGTTTGGAAGTGATGTACTCCTGTATGAAGTCCTT
GAAGTTGCGTTTGCCAACGAAACAAATGCCAGTGCTTTCCTTCTTTTTGG
CCAGTCGCTGGAAGCCAATCTTCTTGGCCAAGTCCTTGACCTGGCTCTTC
TGGAAGTCTCCCAAAGGGAACATCGTGCGTTGCAGAGCCTTTCGGGAAAT
ACCTGCCAAAAAGAATGTCTGGTCCTTGAACGTATCGGCGGGTATTAGCA
AGCGGGCGTCGTTGTTGGAGGCAATCCCCTCCAGGTAGTTGCCCAGACTA
TTCCGGGCGTAGTGACCCGTGGCCACGGCATCGTAGCCGAGATTTTCCAA
GGCGTGCTTGTGAAAGAGGTCAAACTTAATGTGGCGATTGCACAGGATGT
CCGGATTTGGTGTC
BS08182.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3021-PA | 1170 | CG3021-RA | 273..1170 | 914..17 | 4490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:59:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3021-RA | 1412 | CG3021-RA | 375..1272 | 914..17 | 4490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:58:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1027633..1028150 | 534..17 | 2590 | 100 | Minus |
X | 23542271 | X | 1027165..1027546 | 914..533 | 1910 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:59:00 has no hits.
BS08182.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:14 Download gff for
BS08182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3021-PA | 273..1170 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:34:05 Download gff for
BS08182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3021-PA | 273..1170 | 17..914 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:48:22 Download gff for
BS08182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3021-RA | 375..1281 | 9..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:46 Download gff for
BS08182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3021-RA | 375..1281 | 9..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:46 Download gff for
BS08182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1027165..1027546 | 533..914 | 100 | -> | Minus |
X | 1027635..1028159 | 9..532 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:48:22 Download gff for
BS08182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 921198..921579 | 533..914 | 100 | -> | Minus |
arm_X | 921668..922192 | 9..532 | 99 | | Minus |
BS08182.5prime Sequence
806 bp (754 high quality bases) assembled on 2006-01-06
> BS08182.5prime
GAAGTTATCAGTCGACATGATTCGCAACGTAGTGGTGGGCGTGTCGGGCG
GCGTGGACAGCGCCGTTTCCGCCCACCTGCTGGCGGAGCAAGGATTCAAG
GTGCTGGGTGTGTTTATGCGCAACTGGGATGAGGCGGACGAAGTGGGTCG
CTGCAGTGGGGAGGCGGATCTGAAGGACGCCGAGTGGGCGTGCCGGCAGC
TCGGCGTGGAGCTGCGTCAGGTGAACTATGTGCGCGAGTACTGGACGGCG
GTGTTCAGCCAGTTTCTGGACGATTACCAAATGGGCTTGACACCAAATCC
GGACATCCTGTGCAATCGCCACATTAAGTTTGACCTCTTTCACAAGCACG
CCTTGGAAAATCTCGGCTACGATGCCGTGGCCACGGGTCACTACGCCCGG
AATAGTCTGGGCAACTACCTGGAGGGGATTGCCTCCAACAACGACGCCCG
CTTGCTAATACCCGCCGATACGTTCAAGGACCAGACATTCTTTTTGGCAG
GTATTTCCCGAAAGGCTCTGCAACGCACGATGTTCCCTTTGGGAGACTTC
CAGAAGAGCCAGGTCAAGGACTTGGCCAAGAAGATTGGCTTCCAGCGACT
GGCCAAAAAGAAGGAAAGCACTGGCATTTGTTTCGTTGGCAAACGCAACT
TCAAGGACTTCATACAGGAGTACATCACTTCCAAACGTGGTCCCTTCCTA
GACATCGACAGTGGAGCCGTTGTCGGCCACCACGAGGGCATCCATCAATG
GACTGTGGGCCAGCGGTGCCGTCTGAGCTCATTCCTTCAGCCCTATTTTG
TGGCCA
BS08182.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3021-PA | 1170 | CG3021-RA | 1..790 | 17..806 | 3950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:03:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3021-RA | 1412 | CG3021-RA | 103..892 | 17..806 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:03:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1026893..1027546 | 17..670 | 3270 | 100 | Plus |
X | 23542271 | X | 1027633..1027770 | 669..806 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:03:38 has no hits.
BS08182.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:15 Download gff for
BS08182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3021-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:34:07 Download gff for
BS08182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3021-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:27:00 Download gff for
BS08182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3021-RA | 103..891 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:37 Download gff for
BS08182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3021-RA | 103..891 | 17..805 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:37 Download gff for
BS08182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1026893..1027546 | 17..670 | 100 | -> | Plus |
X | 1027635..1027769 | 671..805 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:27:00 Download gff for
BS08182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 920926..921579 | 17..670 | 100 | -> | Plus |
arm_X | 921668..921802 | 671..805 | 100 | | Plus |
BS08182.complete Sequence
1202 bp (1202 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636125
> BS08182.complete
GAAGTTATCAGTCGACATGATTCGCAACGTAGTGGTGGGCGTGTCGGGCG
GCGTGGACAGCGCCGTTTCCGCCCACCTGCTGGCGGAGCAAGGATTCAAG
GTGCTGGGTGTGTTTATGCGCAACTGGGATGAGGCGGACGAAGTGGGTCG
CTGCAGTGGGGAGGCGGATCTGAAGGACGCCGAGTGGGCGTGCCGGCAGC
TCGGCGTGGAGCTGCGTCAGGTGAACTATGTGCGCGAGTACTGGACGGCG
GTGTTCAGCCAGTTTCTGGACGATTACCAAATGGGCTTGACACCAAATCC
GGACATCCTGTGCAATCGCCACATTAAGTTTGACCTCTTTCACAAGCACG
CCTTGGAAAATCTCGGCTACGATGCCGTGGCCACGGGTCACTACGCCCGG
AATAGTCTGGGCAACTACCTGGAGGGGATTGCCTCCAACAACGACGCCCG
CTTGCTAATACCCGCCGATACGTTCAAGGACCAGACATTCTTTTTGGCAG
GTATTTCCCGAAAGGCTCTGCAACGCACGATGTTCCCTTTGGGAGACTTC
CAGAAGAGCCAGGTCAAGGACTTGGCCAAGAAGATTGGCTTCCAGCGACT
GGCCAAAAAGAAGGAAAGCACTGGCATTTGTTTCGTTGGCAAACGCAACT
TCAAGGACTTCATACAGGAGTACATCACTTCCAAACGTGGTCCCTTCCTA
GACATCGACAGTGGAGCCGTTGTCGGCCACCACGAGGGCATCCATCAATG
GACTGTGGGCCAGCGGTGCCGTCTGAGCTCATTCCTTCAGCCCTATTTTG
TGGCCAGGAAAGAGGCCGCAAGCAATACCATCTATGTGGCATCTGGCCAC
AACCATCCCGCCCTTCTCAGCACCCACATAGCCGTCGATCCGCCCAACTG
GCTGTGTTCCAAGTCCCAACAGATTCTTTCGGACACTGGCAGCTTGAGGT
GTCGCTTTCGATTCCAGCACACCAAACCATTGGTGGACTGTCAGCTGAGC
ATCTCTCCCAGTAACACTTTTCTTGTCGAGTTGGACGCTCCTTTAAGAGC
TATTACACCAGGACAATATGCCGTATTCTATGACGACACAGCTTGTTTGG
GTTCGGCCCGCATCCTCAGCGCTAATCCCCTAAAGAAAAAAAACGCACAG
ACGCAGCAAGCTCAAGCCGCAAATCTGGTTAGCTAAAAGCTTTCTAGACC
AT
BS08182.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3021-RA | 1170 | CG3021-PA | 1..1170 | 17..1186 | 5850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:23:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3021-RA | 1412 | CG3021-RA | 103..1272 | 17..1186 | 5850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1026893..1027546 | 17..670 | 3270 | 100 | Plus |
X | 23542271 | X | 1027633..1028150 | 669..1186 | 2590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:23:54 has no hits.
BS08182.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:54 Download gff for
BS08182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3021-RA | 1..1170 | 17..1186 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:56 Download gff for
BS08182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3021-RA | 37..1215 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:28 Download gff for
BS08182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3021-RA | 103..1270 | 17..1184 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:54 Download gff for
BS08182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3021-RA | 37..1215 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:33 Download gff for
BS08182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3021-RA | 103..1270 | 17..1184 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:33 Download gff for
BS08182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1026893..1027546 | 17..670 | 100 | -> | Plus |
X | 1027635..1028148 | 671..1184 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:28 Download gff for
BS08182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 920926..921579 | 17..670 | 100 | -> | Plus |
arm_X | 921668..922181 | 671..1184 | 100 | | Plus |
BS08182.pep Sequence
Translation from 16 to 1185
> BS08182.pep
MIRNVVVGVSGGVDSAVSAHLLAEQGFKVLGVFMRNWDEADEVGRCSGEA
DLKDAEWACRQLGVELRQVNYVREYWTAVFSQFLDDYQMGLTPNPDILCN
RHIKFDLFHKHALENLGYDAVATGHYARNSLGNYLEGIASNNDARLLIPA
DTFKDQTFFLAGISRKALQRTMFPLGDFQKSQVKDLAKKIGFQRLAKKKE
STGICFVGKRNFKDFIQEYITSKRGPFLDIDSGAVVGHHEGIHQWTVGQR
CRLSSFLQPYFVARKEAASNTIYVASGHNHPALLSTHIAVDPPNWLCSKS
QQILSDTGSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQ
YAVFYDDTACLGSARILSANPLKKKNAQTQQAQAANLVS*
BS08182.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3021-PA | 389 | CG3021-PA | 1..389 | 1..389 | 2043 | 100 | Plus |