Clone Sequence Records
BS08188.3prime Sequence
873 bp (838 high quality bases) assembled on 2006-01-06
> BS08188.3prime
ATGGTCTAGAAAGCTTTCAGGTGTCTGCATCATTGAAGCTCATTGCTGCA
TCGAAACTATCCACGATGGTTTCCATGCGCTCATGATGCTCAAATCGGGC
GAACTTTCGCGCAAATTTCCGGCCGGATCGTGCGGTACTGTACCTCCTCG
AGAAGCGCGCACGCCGAAAGAAACGGAAGCGCGTGTCCTCCTCCTCCTCG
TCGTACTCCGGCGCAGACACGGAATCCTCGTCCGTTTCGCGCAGAAATTC
CTTCGGATCCCGATGAATCTTAAAGATCTTGGTGGCCGTCGCCCCGTTTA
ACTTCGATATGGTGCGCGAGGCATTGAGTATTCCACTGGAATTCGAAATG
GAATTGCTGCGGTTCTTAATAGCCGTCAGCCGGTTTGTGATGGACACCAC
GTTGAATAACTTTGACAGCTCCGAGTCGACGCAGCGCGATTCGCGACGCA
GGTTCTTGCCATTCTTTACGTAGATGAAGTGGTTCAAGGGGCTCTGGCTC
AAACTTTGGCTATCCAAGGGATGGCTTCCAGCGGAGCAGGTGGGCGAGAT
GGAGACGGATACGGAGTTGCTGCTGCCGCCGCACCCGCTGGTCAGCAGAG
TGGGCGTGGAGGGCGGCGCTGGCGGTGGCACATGCGGCATTGTGTAGCAA
CGCTGGCGGCCCGAGCTCAATGAGGAACCCCCGCCCGCCGGCCCGTCGTA
CAGGTTGGTCACGTTGTAGCGGCTCAGGCGGCACAGCGACGTGGACTCCG
GTTCCAGTTCCGCCTCCGGGTCGTGGCTGGTGGGCATGTCCATGGCCTGC
AGCAAGCCTTCGACCTCCATGTACTGGCTGTCGGTGGTGAGACGGTGTGT
TTTGTGCATGTCGACTGATAACT
BS08188.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8617-PA | 843 | CG8617-RA | 1..843 | 859..17 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8617-RA | 1328 | CG8617-RA | 84..926 | 859..17 | 4215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:41:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14356171..14356953 | 17..799 | 3915 | 100 | Plus |
| 2R | 25286936 | 2R | 14357135..14357198 | 796..859 | 320 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 11:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 2781..2816 | 203..168 | 117 | 80.6 | Minus |
BS08188.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:27 Download gff for
BS08188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-PA | 1..843 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:34:22 Download gff for
BS08188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-PA | 1..843 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:55:21 Download gff for
BS08188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 84..929 | 14..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:57:30 Download gff for
BS08188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 84..929 | 14..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:57:30 Download gff for
BS08188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14356168..14356950 | 14..796 | 99 | <- | Plus |
| 2R | 14357136..14357198 | 797..859 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:55:21 Download gff for
BS08188.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10243673..10244455 | 14..796 | 99 | <- | Plus |
| arm_2R | 10244641..10244703 | 797..859 | 100 | | Plus |
BS08188.5prime Sequence
873 bp (838 high quality bases) assembled on 2006-01-06
> BS08188.5prime
GAAGTTATCAGTCGACATGCACAAAACACACCGTCTCACCACCGACAGCC
AGTACATGGAGGTCGAAGGCTTGCTGCAGGCCATGGACATGCCCACCAGC
CACGACCCGGAGGCGGAACTGGAACCGGAGTCCACGTCGCTGTGCCGCCT
GAGCCGCTACAACGTGACCAACCTGTACGACGGGCCGGCGGGCGGGGGTT
CCTCATTGAGCTCGGGCCGCCAGCGTTGCTACACAATGCCGCATGTGCCA
CCGCCAGCGCCGCCCTCCACGCCCACTCTGCTGACCAGCGGGTGCGGCGG
CAGCAGCAACTCCGTATCCGTCTCCATCTCGCCCACCTGCTCCGCTGGAA
GCCATCCCTTGGATAGCCAAAGTTTGAGCCAGAGCCCCTTGAACCACTTC
ATCTACGTAAAGAATGGCAAGAACCTGCGTCGCGAATCGCGCTGCGTCGA
CTCGGAGCTGTCAAAGTTATTCAACGTGGTGTCCATCACAAACCGGCTGA
CGGCTATTAAGAACCGCAGCAATTCCATTTCGAATTCCAGTGGAATACTC
AATGCCTCGCGCACCATATCGAAGTTAAACGGGGCGACGGCCACCAAGAT
CTTTAAGATTCATCGGGATCCGAAGGAATTTCTGCGCGAAACGGACGAGG
ATTCCGTGTCTGCGCCGGAGTACGACGAGGAGGAGGAGGACACGCGCTTC
CGTTTCTTTCGGCGTGCGCGCTTCTCGAGGAGGTACAGTACCGCACGATC
CGGCCGGAAATTTGCGCGAAAGTTCGCCCGATTTGAGCATCATGAGCGCA
TGGAAACCATCGTGGATAGTTTCGATGCAGCAATGAGCTTCAATGATGCA
GACACCTGAAAGCTTTCTAGACC
BS08188.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8617-PA | 843 | CG8617-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8617-RA | 1328 | CG8617-RA | 84..926 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14356171..14356953 | 859..77 | 3915 | 100 | Minus |
| 2R | 25286936 | 2R | 14357135..14357198 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 12:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 2781..2816 | 673..708 | 117 | 80.6 | Plus |
BS08188.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:28 Download gff for
BS08188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:34:23 Download gff for
BS08188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:27:23 Download gff for
BS08188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 84..929 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:57:49 Download gff for
BS08188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 84..929 | 17..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 16:57:49 Download gff for
BS08188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14356168..14356950 | 80..862 | 99 | <- | Minus |
| 2R | 14357136..14357198 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:27:23 Download gff for
BS08188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10243673..10244455 | 80..862 | 99 | <- | Minus |
| arm_2R | 10244641..10244703 | 17..79 | 100 | | Minus |
BS08188.complete Sequence
875 bp (875 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636126
> BS08188.complete
GAAGTTATCAGTCGACATGCACAAAACACACCGTCTCACCACCGACAGCC
AGTACATGGAGGTCGAAGGCTTGCTGCAGGCCATGGACATGCCCACCAGC
CACGACCCGGAGGCGGAACTGGAACCGGAGTCCACGTCGCTGTGCCGCCT
GAGCCGCTACAACGTGACCAACCTGTACGACGGGCCGGCGGGCGGGGGTT
CCTCATTGAGCTCGGGCCGCCAGCGTTGCTACACAATGCCGCATGTGCCA
CCGCCAGCGCCGCCCTCCACGCCCACTCTGCTGACCAGCGGGTGCGGCGG
CAGCAGCAACTCCGTATCCGTCTCCATCTCGCCCACCTGCTCCGCTGGAA
GCCATCCCTTGGATAGCCAAAGTTTGAGCCAGAGCCCCTTGAACCACTTC
ATCTACGTAAAGAATGGCAAGAACCTGCGTCGCGAATCGCGCTGCGTCGA
CTCGGAGCTGTCAAAGTTATTCAACGTGGTGTCCATCACAAACCGGCTGA
CGGCTATTAAGAACCGCAGCAATTCCATTTCGAATTCCAGTGGAATACTC
AATGCCTCGCGCACCATATCGAAGTTAAACGGGGCGACGGCCACCAAGAT
CTTTAAGATTCATCGGGATCCGAAGGAATTTCTGCGCGAAACGGACGAGG
ATTCCGTGTCTGCGCCGGAGTACGACGAGGAGGAGGAGGACACGCGCTTC
CGTTTCTTTCGGCGTGCGCGCTTCTCGAGGAGGTACAGTACCGCACGATC
CGGCCGGAAATTTGCGCGAAAGTTCGCCCGATTTGAGCATCATGAGCGCA
TGGAAACCATCGTGGATAGTTTCGATGCAGCAATGAGCTTCAATGATGCA
GACACCTGAAAGCTTTCTAGACCAT
BS08188.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8617-RA | 843 | CG8617-PA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8617-RA | 1328 | CG8617-RA | 84..926 | 17..859 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14356171..14356953 | 859..77 | 3915 | 100 | Minus |
| 2R | 25286936 | 2R | 14357135..14357198 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 2781..2816 | 673..708 | 117 | 80.6 | Plus |
BS08188.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:33 Download gff for
BS08188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:18 Download gff for
BS08188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 87..932 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:27 Download gff for
BS08188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 84..925 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:33 Download gff for
BS08188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 87..932 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:35 Download gff for
BS08188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 84..925 | 17..858 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:35 Download gff for
BS08188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14356172..14356950 | 80..858 | 100 | <- | Minus |
| 2R | 14357136..14357198 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:27 Download gff for
BS08188.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10243677..10244455 | 80..858 | 100 | <- | Minus |
| arm_2R | 10244641..10244703 | 17..79 | 100 | | Minus |
BS08188.pep Sequence
Translation from 16 to 858
> BS08188.pep
MHKTHRLTTDSQYMEVEGLLQAMDMPTSHDPEAELEPESTSLCRLSRYNV
TNLYDGPAGGGSSLSSGRQRCYTMPHVPPPAPPSTPTLLTSGCGGSSNSV
SVSISPTCSAGSHPLDSQSLSQSPLNHFIYVKNGKNLRRESRCVDSELSK
LFNVVSITNRLTAIKNRSNSISNSSGILNASRTISKLNGATATKIFKIHR
DPKEFLRETDEDSVSAPEYDEEEEDTRFRFFRRARFSRRYSTARSGRKFA
RKFARFEHHERMETIVDSFDAAMSFNDADT*
BS08188.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8617-PA | 280 | CG8617-PA | 1..280 | 1..280 | 1450 | 100 | Plus |
