Clone Sequence Records
BS08189.3prime Sequence
897 bp (832 high quality bases) assembled on 2006-01-06
> BS08189.3prime
ATGGTCTAGAAAGCTTCTACTTCTTTTTCTGCTGCTTTGCCTTCCCCTTG
GAGGCTGGAGTGGGTTGCTGCTTGCGCTTCATTGGCTTCCTCTTCCGGTG
GCCGTGATCACTGGAGACATCGCTGTCGCTGTCGGAGAAGTCGTCGCTCT
CCTTTTCTTCCGATGAGTTGCTTTCTTCTGAGGATTCCTCGGCTTTCTGT
TGCGCCTTCTTTGCCTGTATCTTGTTCTTCTTCCCCTTTCCCTTCTTCTT
CTCGGCATCCAGATTCTTATCCTGCTCGTACTCGATGGTCACGAATCCCC
GAGGTGCTGCAGGCTTGGCACTTTGGTCAGACTCCACTTTCGCCTTTGGT
TTCTCCTCCACTTTAATGCGTTGTTCCACCGGTTGGACATTGCCGAACTG
GCGGAGATCCAGCAGGCCCAAGTCGGTGGGTCGGCAGTCCATGAAGCTGC
TGGCAATCTCCTCCAGCTTGCGCGTTTCCATGTCGATCTTCCAGACTTTG
ATTTCACCAGCGCTGGAGACGGTGGCCAGTAATTCGTTCAGATAGGCGAT
GGCCTTGACCCTTGCCTCGTGTGCAAGAATGAAGGTGGGTGGTGTATCAT
CCTCGTCCTTGAGGGAAATCCAGGCAATGTTGCCGTTGTCCAGGCCAGTT
AAACACTCGTTCCCATCCAGCCAGGTGATGCAAATGGGTTTCGCCGGCAT
CTCAATGCGACGCATAACATGAGCGTTCTCGATGCCCCAGATCTCCAGAA
CCAATGGACCGCTAAGTGTGAAGTGATCGCCCTGCTTGGACCACGACAAG
CAGCCCGGTTGGAGACCCAGCGTAGCCTTGTTCTTTAAATTGGTCTTGTA
GGCGACGCGGCCATTGACCAGATTCCAGGTGTTCAGCACCTGGTCGC
BS08189.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12608-PA | 1332 | CG12608-RA | 452..1332 | 897..17 | 4405 | 100 | Minus |
| CG9123-PA | 1305 | CG9123-RA | 452..1108 | 897..241 | 2785 | 96.9 | Minus |
| CG9123-PA | 1305 | CG9123-RA | 1124..1304 | 198..18 | 755 | 96.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12608-RA | 1616 | CG12608-RA | 586..1466 | 897..17 | 4405 | 100 | Minus |
| CG9123-RA | 1592 | CG9123-RA | 589..1441 | 897..18 | 3575 | 94 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:44:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15343007..15343507 | 17..517 | 2505 | 100 | Plus |
| X | 23542271 | X | 15343733..15344040 | 590..897 | 1540 | 100 | Plus |
| X | 23542271 | X | 15341222..15341529 | 590..897 | 1405 | 97.1 | Plus |
| X | 23542271 | X | 15340707..15340996 | 228..517 | 1285 | 96.2 | Plus |
| X | 23542271 | X | 15340524..15340704 | 18..198 | 815 | 96.7 | Plus |
| X | 23542271 | X | 15343597..15343673 | 513..589 | 385 | 100 | Plus |
| X | 23542271 | X | 15341087..15341162 | 514..589 | 350 | 97.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:44:18 has no hits.
BS08189.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:29 Download gff for
BS08189.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12608-PA | 452..1332 | 17..897 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:34:24 Download gff for
BS08189.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12608-PA | 452..1332 | 17..897 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:55:51 Download gff for
BS08189.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12608-RA | 586..1469 | 10..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:54:01 Download gff for
BS08189.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12608-RA | 586..1469 | 10..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:54:01 Download gff for
BS08189.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15343008..15343502 | 18..512 | 100 | <- | Plus |
| X | 15343597..15343673 | 513..589 | 100 | <- | Plus |
| X | 15343733..15344040 | 590..897 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:55:51 Download gff for
BS08189.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15237041..15237535 | 18..512 | 100 | <- | Plus |
| arm_X | 15237630..15237706 | 513..589 | 100 | <- | Plus |
| arm_X | 15237766..15238073 | 590..897 | 100 | | Plus |
BS08189.5prime Sequence
958 bp (823 high quality bases) assembled on 2006-01-06
> BS08189.5prime
GAAGTTATCAGTCGACATGCCGCCGGAAATGGAGATCATAGTGGGCACCT
ACGAGGAGGTCCTGCTGGGCTTCAAGCTCATCAAATCGCCGACTGACGGC
TTGACCGATTCCGTCAAATTTGAGCTGAAACAGACTTTTGCAGACAGCTC
CCATGCAGGATCCATTACATCGGTGGCCGTGCAGTGGCCTTGGGTGGCCA
GTGGCGGTACCGACGACAGGATCTTCGTCTACGACATGCGCACGCGGAAA
CAGTCGCAGATCATACTCTCGCACGCCGGAAGAGTGAACACACTGAAATT
CACACCTGACCTGTCGCACTTGCTCTCCGGGAGCGACGATGGCCATATGA
TCGCCACACGCGTGGGCAGCTGGACCAAAGAGGGTGATTGGCAGAAGGCC
CATGCCGGACAGGCCGTCACCCACATCAGTTGCCATCCCAGCAGCAAGTT
GGCCTTATCTTTGGGCGGCGACCAGGTGCTGAACACCTGGAATCTGGTCA
ATGGCCGCGTCGCCTACAAGACCAATTTAAAGAACAAGGCTACGCTGGGT
CTCCAACCGGGCTGCTTGTCGTGGTCCAAGCAGGGCGATCACTTCACACT
TAGCGGTCCATTGGTTCTGGAGATCTGGGGCATCGAGAACGCTCATGTTA
TGCGTCGCATTGAGATGCCGGCGAAACCCATTTGCATCACCTGGCTGGAT
GGGAACGAGTGTTTAACTGGCCTGGACAACGGCAACATTGCCTGGATTTC
CCTCAAGGACGAGGATGATACACCACCCACCTTCATTCTTGCACACGAGG
CAAGGGTCAAGGCCATCGCCTATCTGAACGAATACTGGGCACCGTCTCCA
GCGCTGGTGAAATCAAGTCTGGAAGATCGACATGAAAACGCGCAAGCTGG
AGGAGATGCCAGCAGCTTCATGGACTGCCGACCCACCGACTTGGGCCTGC
TGGATCTC
BS08189.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12608-PA | 1332 | CG12608-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
| CG9123-PA | 1305 | CG9123-RA | 1..817 | 17..833 | 3385 | 96.5 | Plus |
| CG12608-PA | 1332 | CG12608-RA | 894..945 | 907..958 | 260 | 100 | Plus |
| CG9123-PA | 1305 | CG9123-RA | 899..945 | 912..958 | 235 | 100 | Plus |
| CG12608-PA | 1332 | CG12608-RA | 851..893 | 865..907 | 190 | 97.6 | Plus |
| CG9123-PA | 1305 | CG9123-RA | 851..893 | 865..907 | 190 | 97.6 | Plus |
| CG12608-PA | 1332 | CG12608-RA | 818..851 | 833..866 | 145 | 97 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:55:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12608-RA | 1616 | CG12608-RA | 134..1079 | 16..958 | 4625 | 99.5 | Plus |
| CG9123-RA | 1592 | CG9123-RA | 137..1082 | 16..958 | 4145 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15343733..15344492 | 775..16 | 3800 | 100 | Minus |
| X | 23542271 | X | 15341222..15341981 | 775..16 | 3395 | 96.4 | Minus |
| X | 23542271 | X | 15343394..15343507 | 958..847 | 455 | 97.4 | Minus |
| X | 23542271 | X | 15340883..15340996 | 958..847 | 425 | 95.6 | Minus |
| X | 23542271 | X | 15343597..15343673 | 851..776 | 320 | 97.4 | Minus |
| X | 23542271 | X | 15341087..15341162 | 850..776 | 285 | 94.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:55:55 has no hits.
BS08189.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:30 Download gff for
BS08189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12608-PA | 1..945 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:34:25 Download gff for
BS08189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12608-PA | 1..945 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:22:40 Download gff for
BS08189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12608-RA | 134..1079 | 16..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:21 Download gff for
BS08189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12608-RA | 134..1079 | 16..958 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:21 Download gff for
BS08189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15343394..15343502 | 852..958 | 97 | <- | Minus |
| X | 15343597..15343673 | 776..851 | 97 | <- | Minus |
| X | 15343733..15344492 | 16..775 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:22:40 Download gff for
BS08189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15237427..15237535 | 852..958 | 97 | <- | Minus |
| arm_X | 15237630..15237706 | 776..851 | 97 | <- | Minus |
| arm_X | 15237766..15238525 | 16..775 | 100 | | Minus |
BS08189.complete Sequence
1364 bp (1364 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636127
> BS08189.complete
GAAGTTATCAGTCGACATGCCGCCGGAAATGGAGATCATAGTGGGCACCT
ACGAGGAGGTCCTGCTGGGCTTCAAGCTCATCAAATCGCCGACTGACGGC
TTGACCGATTCCGTCAAATTTGAGCTGAAACAGACTTTTGCAGACAGCTC
CCATGCAGGATCCATTACATCGGTGGCCGTGCAGTGGCCTTGGGTGGCCA
GTGGCGGTACCGACGACAGGATCTTCGTCTACGACATGCGCACGCGGAAA
CAGTCGCAGATCATACTCTCGCACGCCGGAAGAGTGAACACACTGAAATT
CACACCTGACCTGTCGCACTTGCTCTCCGGGAGCGACGATGGCCATATGA
TCGCCACACGCGTGGGCAGCTGGACCAAAGAGGGTGATTGGCAGAAGGCC
CATGCCGGACAGGCCGTCACCCACATCAGTTGCCATCCCAGCAGCAAGTT
GGCCTTATCTTTGGGCGGCGACCAGGTGCTGAACACCTGGAATCTGGTCA
ATGGCCGCGTCGCCTACAAGACCAATTTAAAGAACAAGGCTACGCTGGGT
CTCCAACCGGGCTGCTTGTCGTGGTCCAAGCAGGGCGATCACTTCACACT
TAGCGGTCCATTGGTTCTGGAGATCTGGGGCATCGAGAACGCTCATGTTA
TGCGTCGCATTGAGATGCCGGCGAAACCCATTTGCATCACCTGGCTGGAT
GGGAACGAGTGTTTAACTGGCCTGGACAACGGCAACATTGCCTGGATTTC
CCTCAAGGACGAGGATGATACACCACCCACCTTCATTCTTGCACACGAGG
CAAGGGTCAAGGCCATCGCCTATCTGAACGAATTACTGGCCACCGTCTCC
AGCGCTGGTGAAATCAAAGTCTGGAAGATCGACATGGAAACGCGCAAGCT
GGAGGAGATTGCCAGCAGCTTCATGGACTGCCGACCCACCGACTTGGGCC
TGCTGGATCTCCGCCAGTTCGGCAATGTCCAACCGGTGGAACAACGCATT
AAAGTGGAGGAGAAACCAAAGGCGAAAGTGGAGTCTGACCAAAGTGCCAA
GCCTGCAGCACCTCGGGGATTCGTGACCATCGAGTACGAGCAGGATAAGA
ATCTGGATGCCGAGAAGAAGAAGGGAAAGGGGAAGAAGAACAAGATACAG
GCAAAGAAGGCGCAACAGAAAGCCGAGGAATCCTCAGAAGAAAGCAACTC
ATCGGAAGAAAAGGAGAGCGACGACTTCTCCGACAGCGACAGCGATGTCT
CCAGTGATCACGGCCACCGGAAGAGGAAGCCAATGAAGCGCAAGCAGCAA
CCCACTCCAGCCTCCAAGGGGAAGGCAAAGCAGCAGAAAAAGAAGTAGAA
GCTTTCTAGACCAT
BS08189.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:43:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12608-RA | 1332 | CG12608-PA | 1..1332 | 17..1348 | 6660 | 100 | Plus |
| CG9123-RA | 1305 | CG9123-PA | 1..1121 | 17..1137 | 4990 | 96.3 | Plus |
| CG9123-RA | 1305 | CG9123-PA | 1124..1304 | 1167..1347 | 815 | 96.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12608-RA | 1616 | CG12608-RA | 134..1466 | 16..1348 | 6665 | 100 | Plus |
| CG9123-RA | 1592 | CG9123-RA | 137..1258 | 16..1137 | 4995 | 96.3 | Plus |
| CG9123-RA | 1592 | CG9123-RA | 1261..1441 | 1167..1347 | 815 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:43:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15343733..15344492 | 775..16 | 3800 | 100 | Minus |
| X | 23542271 | X | 15341222..15341981 | 775..16 | 3395 | 96.4 | Minus |
| X | 23542271 | X | 15343007..15343507 | 1348..848 | 2505 | 100 | Minus |
| X | 23542271 | X | 15340707..15340996 | 1137..848 | 1285 | 96.2 | Minus |
| X | 23542271 | X | 15340524..15340704 | 1347..1167 | 815 | 96.7 | Minus |
| X | 23542271 | X | 15343597..15343673 | 852..776 | 385 | 100 | Minus |
| X | 23542271 | X | 15341087..15341162 | 851..776 | 350 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:43:04 has no hits.
BS08189.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:55 Download gff for
BS08189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12608-RA | 1..1332 | 17..1348 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:58 Download gff for
BS08189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12608-RA | 123..1458 | 16..1355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:26 Download gff for
BS08189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12608-RA | 135..1452 | 17..1334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:56 Download gff for
BS08189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12608-RA | 123..1458 | 16..1355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:58 Download gff for
BS08189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12608-RA | 135..1452 | 17..1334 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:58 Download gff for
BS08189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15343021..15343502 | 853..1334 | 100 | <- | Minus |
| X | 15343597..15343673 | 776..852 | 100 | <- | Minus |
| X | 15343733..15344491 | 17..775 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:26 Download gff for
BS08189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15237630..15237706 | 776..852 | 100 | <- | Minus |
| arm_X | 15237054..15237535 | 853..1334 | 100 | <- | Minus |
| arm_X | 15237766..15238524 | 17..775 | 100 | | Minus |
BS08189.pep Sequence
Translation from 16 to 1347
> BS08189.pep
MPPEMEIIVGTYEEVLLGFKLIKSPTDGLTDSVKFELKQTFADSSHAGSI
TSVAVQWPWVASGGTDDRIFVYDMRTRKQSQIILSHAGRVNTLKFTPDLS
HLLSGSDDGHMIATRVGSWTKEGDWQKAHAGQAVTHISCHPSSKLALSLG
GDQVLNTWNLVNGRVAYKTNLKNKATLGLQPGCLSWSKQGDHFTLSGPLV
LEIWGIENAHVMRRIEMPAKPICITWLDGNECLTGLDNGNIAWISLKDED
DTPPTFILAHEARVKAIAYLNELLATVSSAGEIKVWKIDMETRKLEEIAS
SFMDCRPTDLGLLDLRQFGNVQPVEQRIKVEEKPKAKVESDQSAKPAAPR
GFVTIEYEQDKNLDAEKKKGKGKKNKIQAKKAQQKAEESSEESNSSEEKE
SDDFSDSDSDVSSDHGHRKRKPMKRKQQPTPASKGKAKQQKKK*
BS08189.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12608-PA | 443 | CG12608-PA | 1..443 | 1..443 | 2313 | 100 | Plus |
| CG9123-PA | 434 | CG9123-PA | 1..434 | 1..443 | 2070 | 91 | Plus |
