Clone Sequence Records
BS08191.3prime Sequence
928 bp (694 high quality bases) assembled on 2006-01-06
> BS08191.3prime
ATGGTCTAGAAAGCTTCTAAATGAACTCGAATCCCTCATACTTGTAGTCC
GTCTCGATCCTCGTTTCGGGCAGCAGTGTCTTGCCCGCAATATCGAAGGC
TGTGATGAAGGTGGCCGTCTTGCCATTCAACTCCTCCGACTTAAGAGCCA
CGATTATTGAGTCATCGGTGCCGGGCAAGAACTTAAAGCTAGAGAAACCA
TGCGTGGGCGTTGTATTTTCAGGATCGAGCCGTACAGTCTCAACGTTGGT
GAAGCTTTCGTCGGCGGAGACCAGGACATTGCAGCCCATGTGCTCGTCCT
TGGTTTCGTTGTATTTCTCTTTCGAACACCGCCTAGGCAGGAAAAACCAG
CGATTCCTTTCCTCTGACCAGGTTCCACTCTCGTGGATCATGTAGCCCGG
CCAGGTTATTTGCATCGACTGCAGGCGCAACTGCTTGAAATTGTCCACCC
AGTTGAGCGACCTCACCTCGCCGGACGGAGTGATGGCCTTTACGTACATG
GGGTTATTGTTCTCGAAATCACCCGCACTTGTCGTCCACTCCTTGCCCAT
GGAGCCCACATACAGCGTTTGCTCTTTCACTGTGGCCCATTCGGCCTTGA
AGCCCTTGGCACTGTGTCCGTCTCCATCGAGCAGGATCACCCAGGGAATG
GGCTTGTCATTCACAATCTCGTATATCAAACCCGTTCGGTCGTCGAAGGT
GAGCAGGCGCCCGTTGAAGGTGACTAGCTCAGATAGCTCCATTCCGCGGC
CCTTAAGGGCAAATGCTGATTCCAGGACTATCGGCGCCCCGTCATCCCAG
CTAATCTGGATCTCTGACCTGGCCACCGTGTAGGTAAGGTAGCCCTTCTT
CAGGTAGCTACGCCACGTGCTGCTCCCATCGCCCTTGCTCACCTTGGAAC
TGGGTGTCAGATCGGCAATCATGGCTAT
BS08191.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5276-PA | 1260 | CG5276-RA | 374..1260 | 903..17 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:22:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5276-RB | 1608 | CG5276-RB | 446..1357 | 928..17 | 4515 | 99.8 | Minus |
CG5276-RA | 1752 | CG5276-RA | 590..1501 | 928..17 | 4515 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11432327..11432940 | 928..315 | 3010 | 99.3 | Minus |
3R | 32079331 | 3R | 11432995..11433292 | 314..17 | 1490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:22:39 has no hits.
BS08191.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:31 Download gff for
BS08191.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5276-PA | 349..1260 | 17..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:34:27 Download gff for
BS08191.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5276-PA | 349..1260 | 17..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:44:49 Download gff for
BS08191.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5276-RA | 590..1503 | 12..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:13 Download gff for
BS08191.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5276-RA | 590..1503 | 12..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:13 Download gff for
BS08191.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11432327..11432940 | 315..928 | 99 | -> | Minus |
3R | 11432995..11433294 | 12..314 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:44:49 Download gff for
BS08191.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7258717..7259016 | 12..314 | 99 | | Minus |
arm_3R | 7258049..7258662 | 315..928 | 99 | -> | Minus |
BS08191.5prime Sequence
927 bp (799 high quality bases) assembled on 2006-01-06
> BS08191.5prime
GAAGTTATCAGTCGACATGCAGAGCCCTGCCTTCGCGTACCGGGAACACG
CAGAACACTCGCCGCGCGCCATGTACATGCGCGACTGGCGATCGGCCCTG
CGGACGCCCACGTACCGGATTGGGAATCGGACGGTGCGCTTTAACTATCA
CTTCGCCCTTCTGATTGTTTGCGCCTTCGTACTCGTCCTACTCTTCTACT
TTGCGCGCCAGGGATCGCACTCCTCCTCCGACGGCTACTGGCTGCGCCGC
AGTTACACGGATGCCCGGAGTCTGGACAATGGTGGTCCAGTGGTCCAGGC
CTACAATGCCACATATCCGCTCACGTCACCCATGGTGCTGCGTGGCGGTG
TGATAAACTACCGGATAGCCATGATTGCCGATCTGGACACCAGTTCCAAG
GTGAGCAAGGGCGATGGGAGCAGCACGTGGCGTAGCTACCTGAAGAAGGG
CTACCTTACCTACACGGTGGCCAGGTCAGAGATCCAGATTAGCTGGGATG
ACGGGGCGCCGATAGTCCTGGAATCAGCATTTGCCCTTAAGGGCCGCGGA
ATGGAGCTATCTGAGCTAGTCACCTTCAACGGGCGCCTGCTCACCTTCGA
CGACCGAACGGGTTTGATATACGAGATTGTGAATGACAAGCCCATTCCCT
GGGTGATCCTGCTCGATGGAGACGGACACAGTGCCAAGGGCTTCAAGGCC
GAATGGGCCACAGTGAAAGAGCAAACGCTGTATGTGGGCTCCATGGGCAA
GGAGTGGACGACAAGTGCGGGTGATTTCGAGAACAATAACCCCATGTACG
TAAAGGCCATCACTCCGTCCGGCGAGGTGAGGTCGCTCAACTGGGTGGAC
AATTTTCAGCAGTTGCGCCTGCAGTCGATGCAAATAACCTGGCCGGGCTA
CATGATCCACGAGAGTGGAACCTGGTC
BS08191.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5276-PA | 1260 | CG5276-RA | 1..911 | 17..927 | 4505 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5276-RB | 1608 | CG5276-RB | 98..1008 | 17..927 | 4525 | 99.8 | Plus |
CG5276-RA | 1752 | CG5276-RA | 242..1152 | 17..927 | 4525 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11431979..11432889 | 17..927 | 4525 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:52:14 has no hits.
BS08191.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:32 Download gff for
BS08191.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5276-PA | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:34:28 Download gff for
BS08191.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5276-PA | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:22:05 Download gff for
BS08191.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5276-RA | 242..1152 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:31:06 Download gff for
BS08191.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5276-RA | 242..1152 | 17..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:31:06 Download gff for
BS08191.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11431979..11432889 | 17..927 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:22:05 Download gff for
BS08191.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7257701..7258611 | 17..927 | 99 | | Plus |
BS08191.complete Sequence
1292 bp (1292 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636128
> BS08191.complete
GAAGTTATCAGTCGACATGCAGAGCCCTGCCTTCGCGTACCGGGAACACG
CAGAACACTCGCCGCGCGCCATGTACATGCGCGACTGGCGATCGGCCCTG
CGGACGCCCACGTACCGGATTGGGAATCGGACGGTGCGCTTTAACTATCA
CTTCGCCCTTCTGATTGTTTGCGCCTTCGTACTCGTCCTACTCTTCTACT
TTGCGCGCCAGGGATCGCACTCCTCCTCCGACGGCTACTGGCTGCGCCGC
AGTTACACGGATGCCCGGAGTCTGGACAATGGTGGTCCAGTGGTCCAGGC
CTACAATGCCACATATCCGCTCACGTCACCCATGGTGCTGCGTGGCGGTG
TGATAAACTACCGGATAGCCATGATTGCCGATCTGGACACCAGTTCCAAG
GTGAGCAAGGGCGATGGGAGCAGCACGTGGCGTAGCTACCTGAAGAAGGG
CTACCTTACCTACACGGTGGCCAGGTCAGAGATCCAGATTAGCTGGGATG
ACGGGGCGCCGATAGTCCTGGAATCAGCATTTGCCCTTAAGGGCCGCGGA
ATGGAGCTATCTGAGCTAGTCACCTTCAACGGGCGCCTGCTCACCTTCGA
CGACCGAACGGGTTTGATATACGAGATTGTGAATGACAAGCCCATTCCCT
GGGTGATCCTGCTCGATGGAGACGGACACAGTGCCAAGGGCTTCAAGGCC
GAATGGGCCACAGTGAAAGAGCAAACGCTGTATGTGGGCTCCATGGGCAA
GGAGTGGACGACAAGTGCGGGTGATTTCGAGAACAATAACCCCATGTACG
TAAAGGCCATCACTCCGTCCGGCGAGGTGAGGTCGCTCAACTGGGTGGAC
AATTTCAAGCAGTTGCGCCTGCAGTCGATGCAAATAACCTGGCCGGGCTA
CATGATCCACGAGAGTGGAACCTGGTCAGAGGAAAGGAATCGCTGGTTTT
TCCTGCCTAGGCGGTGTTCGAAAGAGAAATACAACGAAACCAAGGACGAG
CACATGGGCTGCAATGTCCTGGTCTCCGCCGACGAAAGCTTCACCAACGT
TGAGACTGTACGGCTCGATCCTGAAAATACAACGCCCACGCATGGTTTCT
CTAGCTTTAAGTTCTTGCCCGGCACCGATGACTCAATAATCGTGGCTCTT
AAGTCGGAGGAGTTGAATGGCAAGACGGCCACCTTCATCACAGCCTTCGA
TATTGCGGGCAAGACACTGCTGCCCGAAACGAGGATCGAGACGGACTACA
AGTATGAGGGATTCGAGTTCATTTAGAAGCTTTCTAGACCAT
BS08191.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5276-RB | 1260 | CG5276-PB | 1..1260 | 17..1276 | 6300 | 100 | Plus |
CG5276-RA | 1260 | CG5276-PA | 1..1260 | 17..1276 | 6300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5276-RB | 1608 | CG5276-RB | 98..1357 | 17..1276 | 6300 | 100 | Plus |
CG5276-RA | 1752 | CG5276-RA | 242..1501 | 17..1276 | 6300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11431979..11432940 | 17..978 | 4810 | 100 | Plus |
3R | 32079331 | 3R | 11432995..11433292 | 979..1276 | 1490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:42:32 has no hits.
BS08191.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:56 Download gff for
BS08191.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5276-RA | 1..1260 | 17..1276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:00 Download gff for
BS08191.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5276-RA | 242..1503 | 17..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:57 Download gff for
BS08191.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5276-RA | 242..1501 | 17..1276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:57 Download gff for
BS08191.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5276-RA | 242..1503 | 17..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:16 Download gff for
BS08191.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5276-RA | 242..1501 | 17..1276 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:16 Download gff for
BS08191.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11431979..11432940 | 17..978 | 100 | -> | Plus |
3R | 11432995..11433292 | 979..1276 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:57 Download gff for
BS08191.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7257701..7258662 | 17..978 | 100 | -> | Plus |
arm_3R | 7258717..7259014 | 979..1276 | 100 | | Plus |
BS08191.pep Sequence
Translation from 16 to 1275
> BS08191.pep
MQSPAFAYREHAEHSPRAMYMRDWRSALRTPTYRIGNRTVRFNYHFALLI
VCAFVLVLLFYFARQGSHSSSDGYWLRRSYTDARSLDNGGPVVQAYNATY
PLTSPMVLRGGVINYRIAMIADLDTSSKVSKGDGSSTWRSYLKKGYLTYT
VARSEIQISWDDGAPIVLESAFALKGRGMELSELVTFNGRLLTFDDRTGL
IYEIVNDKPIPWVILLDGDGHSAKGFKAEWATVKEQTLYVGSMGKEWTTS
AGDFENNNPMYVKAITPSGEVRSLNWVDNFKQLRLQSMQITWPGYMIHES
GTWSEERNRWFFLPRRCSKEKYNETKDEHMGCNVLVSADESFTNVETVRL
DPENTTPTHGFSSFKFLPGTDDSIIVALKSEELNGKTATFITAFDIAGKT
LLPETRIETDYKYEGFEFI*
BS08191.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5276-PB | 419 | CG5276-PB | 1..419 | 1..419 | 2223 | 100 | Plus |
CG5276-PA | 419 | CG5276-PA | 1..419 | 1..419 | 2223 | 100 | Plus |