Clone Sequence Records
BS08206.3prime Sequence
844 bp (747 high quality bases) assembled on 2006-01-10
> BS08206.3prime
ATGGTCTAGAAAGCTTTTATGACATGGAGCTGCACGGCAGCCGTGGCGAA
CCCATCTGTGTGAGCACGCGATCCAGCCACTGGAGCGGCCCGTTCAGATG
GAGTTCGATCCAGCAGGGCGTTGAGGTCACCGTCTGGCGGCGATATTCGG
CGCCCCAGCCCTTGACGAACGACATGCGGATGGTGCACATGCGTGTCAAT
TGGTAGACCGCTTCGAATCCCTGCGACACGGACTGCGACAGCAGGGCGGC
AAACTCCTGGTTGTTGAAGATCTTTAGGTTGCAACCGGGCGGTATCTTGC
ATACGGTGGCCGGATGCCAGCCATATCGCTGATTACAATTTGGGCTCTGT
ACGAAAATGGACGAATCGCTCAGACATTCTGCGAATACCTCACCGCCAAT
ATAGTAAAGCCGTACGCCCTTGCCGATGTGGCGACGTGTCTGCTCCACGA
CCTCGTTGCGATTCACATTAGACAGCAGTCCGAGGCAAAAGCGCTCCGAA
TTGGAGGGATCGGTAAAGCCATCCACCGTGATCGAGGGCTGCGAGGCATG
GAACGTCTCGCCGACACGCGTATTTAGCTCATAGTAGGAGATGGAACACC
AAAAGGCCGGCTCGTGGTACATCACCGGCGCTGCATCGGCGGGCGGCGTT
AGACGCGACATGTTCATGTTGTCGTTAGGATCGATGGGGTCACCATCCTC
GCTCATATAGCCGGGCGGCGGGGTGCCGGTGTTGGGAATGCTGCTGCCCA
CACTAAGCACACTCGATTGAGAGTCCATGTTTTGGGCAAAGGACAGCTGC
TGCTGTTGCTGTTGATAGGCGGAGGCGGCGGACGATGACGACGA
BS08206.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2262-PA | 1461 | Smox-RA | 634..1461 | 844..17 | 4115 | 99.8 | Minus |
CG12399-PA | 1368 | Mad-RA | 1255..1313 | 130..72 | 170 | 91.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:21:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Smox-RB | 4521 | CG2262-RB | 1513..2340 | 844..17 | 4125 | 99.9 | Minus |
Smox-RA | 3171 | CG2262-RA | 1513..2340 | 844..17 | 4125 | 99.9 | Minus |
Mad-RB | 3262 | CG12399-RB | 1600..1865 | 316..51 | 550 | 80.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:21:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8139222..8140049 | 17..844 | 4125 | 99.9 | Plus |
2L | 23513712 | 2L | 3147453..3147718 | 51..316 | 550 | 80.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:21:06 has no hits.
BS08206.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:46 Download gff for
BS08206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Smox-PA | 635..1461 | 17..843 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:34:49 Download gff for
BS08206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2262-PA | 635..1461 | 17..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:30:51 Download gff for
BS08206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Smox-RA | 1514..2342 | 13..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:40:29 Download gff for
BS08206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Smox-RA | 1514..2342 | 13..843 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:40:29 Download gff for
BS08206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8139218..8140048 | 13..843 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:30:51 Download gff for
BS08206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8033251..8034081 | 13..843 | 99 | | Plus |
BS08206.5prime Sequence
830 bp (769 high quality bases) assembled on 2006-01-10
> BS08206.5prime
GAAGTTATCAGTCGACATGTTGCCATTCACCCCGCAGGTGGTCAAGCGTT
TGTTAGCACTCAAAAAGGGCAACGAGGACAACAGCGTCGAGGGCAAGTGG
TCAGAGAAGGCCGTCAAGAATCTGGTCAAGAAGATCAAGAAGAATTCGCA
GCTGGAGGAGCTAGAGCGCGCGATCTCCACACAGAACTGCCAGACGCGGT
GCGTGACGGTGCCGCGCAGCAAGCCAGCTCCCGCCGGCGAGCATCTGCGC
AAGGGTCTGCCGCACGTCATCTATTGCCGCCTGTGGCGCTGGCCCGATCT
CCAGAGTCAGAATGAACTAAAGCCCCTCGATCATTGCGAGTACGCCTTCC
ATTTGCGCAAGGAGGAGATCTGCATAAATCCGTACCACTACAAAAAAATT
GAACTGTCCATCCTGGTGCCCAAATCGCTGCCCACGCCGCCCGACTCCAT
TGTGGACTATCCGCTGGACAACCATACGCACCAGATACCCAACAACACCG
ATTACAATGCGGCGATCATTCGCAGCGCCTCGTTGAGTCCGCCGCAGTAC
ATGGAATTGGGCGGTGCCGGGCCCGTTTCCGTATCATCGTCTGCCAGTTC
GACGCCAGCGACTGCCGCCGGTGGTGGTGGTGGTCCCTCCTCGTCGTCGT
CGTCGTCATCGTCCGCCGCCTCCGCCTATCAACAGCAACAGCAGCAGCTG
TCCTTTGGCCAAAACATGGACTCTCAATCGAGTGTGCTTAGTGTGGGCAG
CAGCATTCCCAACACCGGCACCCCGCCGCCCGGCTATATGAGCGAGGATG
GTGACCCCATCGATCCTAACGACAACATGA
BS08206.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2262-PA | 1461 | Smox-RA | 1..814 | 17..830 | 4070 | 100 | Plus |
CG12399-PA | 1368 | Mad-RA | 280..332 | 248..300 | 140 | 90.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:23:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Smox-RB | 4521 | CG2262-RB | 880..1693 | 17..830 | 4070 | 100 | Plus |
Smox-RA | 3171 | CG2262-RA | 880..1693 | 17..830 | 4070 | 100 | Plus |
Mad-RB | 3262 | CG12399-RB | 811..893 | 248..330 | 205 | 83.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8139869..8140682 | 830..17 | 4070 | 100 | Minus |
2L | 23513712 | 2L | 3148646..3148728 | 330..248 | 205 | 83.1 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:23:14 has no hits.
BS08206.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:47 Download gff for
BS08206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Smox-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:34:50 Download gff for
BS08206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2262-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:40:26 Download gff for
BS08206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Smox-RA | 877..1692 | 14..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:03 Download gff for
BS08206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Smox-RA | 877..1692 | 14..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:03 Download gff for
BS08206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8139870..8140685 | 14..829 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:40:26 Download gff for
BS08206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8033903..8034718 | 14..829 | 99 | | Minus |
BS08206.complete Sequence
1493 bp assembled on 2007-10-17
GenBank Submission: KX804736
> BS08206.complete
GAAGTTATCAGTCGACATGTTGCCATTCACCCCGCAGGTGGTCAAGCGTT
TGTTAGCACTCAAAAAGGGCAACGAGGACAACAGCGTCGAGGGCAAGTGG
TCAGAGAAGGCCGTCAAGAATCTGGTCAAGAAGATCAAGAAGAATTCGCA
GCTGGAGGAGCTAGAGCGCGCGATCTCCACACAGAACTGCCAGACGCGGT
GCGTGACGGTGCCGCGCAGCAAGCCAGCTCCCGCCGGCGAGCATCTGCGC
AAGGGTCTGCCGCACGTCATCTATTGCCGCCTGTGGCGCTGGCCCGATCT
CCAGAGTCAGAATGAACTAAAGCCCCTCGATCATTGCGAGTACGCCTTCC
ATTTGCGCAAGGAGGAGATCTGCATAAATCCGTACCACTACAAAAAAATT
GAACTGTCCATCCTGGTGCCCAAATCGCTGCCCACGCCGCCCGACTCCAT
TGTGGACTATCCGCTGGACAACCATACGCACCAGATACCCAACAACACCG
ATTACAATGCGGCGATCATTCGCAGCGCCTCGTTGAGTCCGCCGCAGTAC
ATGGAATTGGGCGGTGCCGGGCCCGTTTCCGTATCATCGTCTGCCAGTTC
GACGCCAGCGACTGCCGCCGGTGGTGGTGGTGGTCCCTCCTCGTCGTCGT
CGTCGTCATCGTCCGCCGCCTCCGCCTATCAACAGCAACAGCAGCAGCTG
TCCTTTGGCCAAAACATGGACTCTCAATCGAGTGTGCTTAGTGTGGGCAG
CAGCATTCCCAACACCGGCACCCCGCCGCCCGGCTATATGAGCGAGGATG
GTGACCCCATCGATCCTAACGACAACATGAACATGTCGCGTCTAACGCCG
CCCGCCGATGCAGCGCCGGTGATGTACCACGAGCCGGCCTTTTGGTGTTC
CATCTCCTACTATGAGCTAAATACGCGTGTCGGCGAGACGTTCCATGCCT
CGCAGCCCTCGATCACGGTGGATGGCTTTACCGATCCCTCCAATTCGGAG
CGCTTTTGCCTCGGACTGCTGTCTAATGTGAATCGCAACGAGGTCGTGGA
GCAGACACGTCGCCACATCGGCAAGGGCGTACGGCTTTACTATATTGGCG
GTGAGGTATTCGCAGAATGTCTGAGCGATTCGTCCATTTTCGTACAGAGC
CCAAATTGTAATCAGCGATATGGCTGGCATCCGGCCACCGTATGCAAGAT
ACCGCCCGGTTGCAACCTAAAGATCTTCAACAACCAGGAGTTTGCCGCCC
TGCTGTCGCAGTCCGTGTCGCAGGGATTCGAAGCGGTCTACCAATTGACA
CGCATGTGCACCATCCGCATGTCGTTCGTCAAGGGCTGGGGCGCCGAATA
TCGCCGCCAGACGGTGACCTCAACGCCCTGCTGGATCGAACTCCATCTGA
ACGGGCCGCTCCAGTGGCTGGATCGCGTGCTCACACAGATGGGTTCGCCA
CGGCTGCCGTGCAGCTCCATGTCATAAAAGCTTTCTAGACCAT
BS08206.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:52:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Smox-RB | 1461 | CG2262-PB | 1..1461 | 17..1477 | 7305 | 100 | Plus |
Smox-RA | 1461 | CG2262-PA | 1..1461 | 17..1477 | 7305 | 100 | Plus |
Mad-RB | 1578 | CG12399-PB | 1279..1544 | 1178..1443 | 550 | 80.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:52:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Smox-RB | 4521 | CG2262-RB | 880..2340 | 17..1477 | 7305 | 100 | Plus |
Smox-RA | 3171 | CG2262-RA | 880..2340 | 17..1477 | 7305 | 100 | Plus |
Mad-RB | 3262 | CG12399-RB | 1600..1865 | 1178..1443 | 550 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:52:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8139222..8140682 | 1477..17 | 7305 | 100 | Minus |
2L | 23513712 | 2L | 3147453..3147718 | 1443..1178 | 550 | 80.5 | Minus |
2L | 23513712 | 2L | 3148646..3148728 | 330..248 | 205 | 83.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:52:26 has no hits.
BS08206.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:13 Download gff for
BS08206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Smox-RA | 1..1461 | 17..1477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:39:01 Download gff for
BS08206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Smox-RA | 839..2304 | 14..1481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:29 Download gff for
BS08206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Smox-RA | 885..2338 | 22..1475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:30 Download gff for
BS08206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Smox-RA | 847..2300 | 22..1475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:43 Download gff for
BS08206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Smox-RA | 885..2338 | 22..1475 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:43 Download gff for
BS08206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8139224..8140677 | 22..1475 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:29 Download gff for
BS08206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8033257..8034710 | 22..1475 | 100 | | Minus |
BS08206.pep Sequence
Translation from 16 to 1476
> BS08206.pep
MLPFTPQVVKRLLALKKGNEDNSVEGKWSEKAVKNLVKKIKKNSQLEELE
RAISTQNCQTRCVTVPRSKPAPAGEHLRKGLPHVIYCRLWRWPDLQSQNE
LKPLDHCEYAFHLRKEEICINPYHYKKIELSILVPKSLPTPPDSIVDYPL
DNHTHQIPNNTDYNAAIIRSASLSPPQYMELGGAGPVSVSSSASSTPATA
AGGGGGPSSSSSSSSSAASAYQQQQQQLSFGQNMDSQSSVLSVGSSIPNT
GTPPPGYMSEDGDPIDPNDNMNMSRLTPPADAAPVMYHEPAFWCSISYYE
LNTRVGETFHASQPSITVDGFTDPSNSERFCLGLLSNVNRNEVVEQTRRH
IGKGVRLYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPPGCN
LKIFNNQEFAALLSQSVSQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTV
TSTPCWIELHLNGPLQWLDRVLTQMGSPRLPCSSMS*
BS08206.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Smox-PB | 486 | CG2262-PB | 1..486 | 1..486 | 2597 | 100 | Plus |
Smox-PA | 486 | CG2262-PA | 1..486 | 1..486 | 2597 | 100 | Plus |
Mad-PA | 455 | CG12399-PA | 20..455 | 1..486 | 1261 | 53 | Plus |
Mad-PB | 525 | CG12399-PB | 90..525 | 1..486 | 1261 | 53 | Plus |
Med-PB | 697 | CG1775-PB | 353..688 | 185..475 | 435 | 35.4 | Plus |