Clone BS08206 Report

Search the DGRC for BS08206

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:82
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptSmox-RA
Protein status:BS08206.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08206.3prime Sequence

844 bp (747 high quality bases) assembled on 2006-01-10

> BS08206.3prime
ATGGTCTAGAAAGCTTTTATGACATGGAGCTGCACGGCAGCCGTGGCGAA
CCCATCTGTGTGAGCACGCGATCCAGCCACTGGAGCGGCCCGTTCAGATG
GAGTTCGATCCAGCAGGGCGTTGAGGTCACCGTCTGGCGGCGATATTCGG
CGCCCCAGCCCTTGACGAACGACATGCGGATGGTGCACATGCGTGTCAAT
TGGTAGACCGCTTCGAATCCCTGCGACACGGACTGCGACAGCAGGGCGGC
AAACTCCTGGTTGTTGAAGATCTTTAGGTTGCAACCGGGCGGTATCTTGC
ATACGGTGGCCGGATGCCAGCCATATCGCTGATTACAATTTGGGCTCTGT
ACGAAAATGGACGAATCGCTCAGACATTCTGCGAATACCTCACCGCCAAT
ATAGTAAAGCCGTACGCCCTTGCCGATGTGGCGACGTGTCTGCTCCACGA
CCTCGTTGCGATTCACATTAGACAGCAGTCCGAGGCAAAAGCGCTCCGAA
TTGGAGGGATCGGTAAAGCCATCCACCGTGATCGAGGGCTGCGAGGCATG
GAACGTCTCGCCGACACGCGTATTTAGCTCATAGTAGGAGATGGAACACC
AAAAGGCCGGCTCGTGGTACATCACCGGCGCTGCATCGGCGGGCGGCGTT
AGACGCGACATGTTCATGTTGTCGTTAGGATCGATGGGGTCACCATCCTC
GCTCATATAGCCGGGCGGCGGGGTGCCGGTGTTGGGAATGCTGCTGCCCA
CACTAAGCACACTCGATTGAGAGTCCATGTTTTGGGCAAAGGACAGCTGC
TGCTGTTGCTGTTGATAGGCGGAGGCGGCGGACGATGACGACGA

BS08206.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2262-PA 1461 Smox-RA 634..1461 844..17 4115 99.8 Minus
CG12399-PA 1368 Mad-RA 1255..1313 130..72 170 91.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
Smox-RB 4521 CG2262-RB 1513..2340 844..17 4125 99.9 Minus
Smox-RA 3171 CG2262-RA 1513..2340 844..17 4125 99.9 Minus
Mad-RB 3262 CG12399-RB 1600..1865 316..51 550 80.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8139222..8140049 17..844 4125 99.9 Plus
2L 23513712 2L 3147453..3147718 51..316 550 80.5 Plus
Blast to na_te.dros performed on 2015-02-10 23:21:06 has no hits.

BS08206.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:46 Download gff for BS08206.3prime
Subject Subject Range Query Range Percent Splice Strand
Smox-PA 635..1461 17..843 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:34:49 Download gff for BS08206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2262-PA 635..1461 17..843 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:30:51 Download gff for BS08206.3prime
Subject Subject Range Query Range Percent Splice Strand
Smox-RA 1514..2342 13..843 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:40:29 Download gff for BS08206.3prime
Subject Subject Range Query Range Percent Splice Strand
Smox-RA 1514..2342 13..843 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:40:29 Download gff for BS08206.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8139218..8140048 13..843 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:30:51 Download gff for BS08206.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8033251..8034081 13..843 99   Plus

BS08206.5prime Sequence

830 bp (769 high quality bases) assembled on 2006-01-10

> BS08206.5prime
GAAGTTATCAGTCGACATGTTGCCATTCACCCCGCAGGTGGTCAAGCGTT
TGTTAGCACTCAAAAAGGGCAACGAGGACAACAGCGTCGAGGGCAAGTGG
TCAGAGAAGGCCGTCAAGAATCTGGTCAAGAAGATCAAGAAGAATTCGCA
GCTGGAGGAGCTAGAGCGCGCGATCTCCACACAGAACTGCCAGACGCGGT
GCGTGACGGTGCCGCGCAGCAAGCCAGCTCCCGCCGGCGAGCATCTGCGC
AAGGGTCTGCCGCACGTCATCTATTGCCGCCTGTGGCGCTGGCCCGATCT
CCAGAGTCAGAATGAACTAAAGCCCCTCGATCATTGCGAGTACGCCTTCC
ATTTGCGCAAGGAGGAGATCTGCATAAATCCGTACCACTACAAAAAAATT
GAACTGTCCATCCTGGTGCCCAAATCGCTGCCCACGCCGCCCGACTCCAT
TGTGGACTATCCGCTGGACAACCATACGCACCAGATACCCAACAACACCG
ATTACAATGCGGCGATCATTCGCAGCGCCTCGTTGAGTCCGCCGCAGTAC
ATGGAATTGGGCGGTGCCGGGCCCGTTTCCGTATCATCGTCTGCCAGTTC
GACGCCAGCGACTGCCGCCGGTGGTGGTGGTGGTCCCTCCTCGTCGTCGT
CGTCGTCATCGTCCGCCGCCTCCGCCTATCAACAGCAACAGCAGCAGCTG
TCCTTTGGCCAAAACATGGACTCTCAATCGAGTGTGCTTAGTGTGGGCAG
CAGCATTCCCAACACCGGCACCCCGCCGCCCGGCTATATGAGCGAGGATG
GTGACCCCATCGATCCTAACGACAACATGA

BS08206.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2262-PA 1461 Smox-RA 1..814 17..830 4070 100 Plus
CG12399-PA 1368 Mad-RA 280..332 248..300 140 90.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
Smox-RB 4521 CG2262-RB 880..1693 17..830 4070 100 Plus
Smox-RA 3171 CG2262-RA 880..1693 17..830 4070 100 Plus
Mad-RB 3262 CG12399-RB 811..893 248..330 205 83.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8139869..8140682 830..17 4070 100 Minus
2L 23513712 2L 3148646..3148728 330..248 205 83.1 Minus
Blast to na_te.dros performed on 2015-02-04 01:23:14 has no hits.

BS08206.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:47 Download gff for BS08206.5prime
Subject Subject Range Query Range Percent Splice Strand
Smox-PA 1..813 17..829 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:34:50 Download gff for BS08206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2262-PA 1..813 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:40:26 Download gff for BS08206.5prime
Subject Subject Range Query Range Percent Splice Strand
Smox-RA 877..1692 14..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:03 Download gff for BS08206.5prime
Subject Subject Range Query Range Percent Splice Strand
Smox-RA 877..1692 14..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:03 Download gff for BS08206.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8139870..8140685 14..829 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:40:26 Download gff for BS08206.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8033903..8034718 14..829 99   Minus

BS08206.complete Sequence

1493 bp assembled on 2007-10-17

GenBank Submission: KX804736

> BS08206.complete
GAAGTTATCAGTCGACATGTTGCCATTCACCCCGCAGGTGGTCAAGCGTT
TGTTAGCACTCAAAAAGGGCAACGAGGACAACAGCGTCGAGGGCAAGTGG
TCAGAGAAGGCCGTCAAGAATCTGGTCAAGAAGATCAAGAAGAATTCGCA
GCTGGAGGAGCTAGAGCGCGCGATCTCCACACAGAACTGCCAGACGCGGT
GCGTGACGGTGCCGCGCAGCAAGCCAGCTCCCGCCGGCGAGCATCTGCGC
AAGGGTCTGCCGCACGTCATCTATTGCCGCCTGTGGCGCTGGCCCGATCT
CCAGAGTCAGAATGAACTAAAGCCCCTCGATCATTGCGAGTACGCCTTCC
ATTTGCGCAAGGAGGAGATCTGCATAAATCCGTACCACTACAAAAAAATT
GAACTGTCCATCCTGGTGCCCAAATCGCTGCCCACGCCGCCCGACTCCAT
TGTGGACTATCCGCTGGACAACCATACGCACCAGATACCCAACAACACCG
ATTACAATGCGGCGATCATTCGCAGCGCCTCGTTGAGTCCGCCGCAGTAC
ATGGAATTGGGCGGTGCCGGGCCCGTTTCCGTATCATCGTCTGCCAGTTC
GACGCCAGCGACTGCCGCCGGTGGTGGTGGTGGTCCCTCCTCGTCGTCGT
CGTCGTCATCGTCCGCCGCCTCCGCCTATCAACAGCAACAGCAGCAGCTG
TCCTTTGGCCAAAACATGGACTCTCAATCGAGTGTGCTTAGTGTGGGCAG
CAGCATTCCCAACACCGGCACCCCGCCGCCCGGCTATATGAGCGAGGATG
GTGACCCCATCGATCCTAACGACAACATGAACATGTCGCGTCTAACGCCG
CCCGCCGATGCAGCGCCGGTGATGTACCACGAGCCGGCCTTTTGGTGTTC
CATCTCCTACTATGAGCTAAATACGCGTGTCGGCGAGACGTTCCATGCCT
CGCAGCCCTCGATCACGGTGGATGGCTTTACCGATCCCTCCAATTCGGAG
CGCTTTTGCCTCGGACTGCTGTCTAATGTGAATCGCAACGAGGTCGTGGA
GCAGACACGTCGCCACATCGGCAAGGGCGTACGGCTTTACTATATTGGCG
GTGAGGTATTCGCAGAATGTCTGAGCGATTCGTCCATTTTCGTACAGAGC
CCAAATTGTAATCAGCGATATGGCTGGCATCCGGCCACCGTATGCAAGAT
ACCGCCCGGTTGCAACCTAAAGATCTTCAACAACCAGGAGTTTGCCGCCC
TGCTGTCGCAGTCCGTGTCGCAGGGATTCGAAGCGGTCTACCAATTGACA
CGCATGTGCACCATCCGCATGTCGTTCGTCAAGGGCTGGGGCGCCGAATA
TCGCCGCCAGACGGTGACCTCAACGCCCTGCTGGATCGAACTCCATCTGA
ACGGGCCGCTCCAGTGGCTGGATCGCGTGCTCACACAGATGGGTTCGCCA
CGGCTGCCGTGCAGCTCCATGTCATAAAAGCTTTCTAGACCAT

BS08206.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
Smox-RB 1461 CG2262-PB 1..1461 17..1477 7305 100 Plus
Smox-RA 1461 CG2262-PA 1..1461 17..1477 7305 100 Plus
Mad-RB 1578 CG12399-PB 1279..1544 1178..1443 550 80.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
Smox-RB 4521 CG2262-RB 880..2340 17..1477 7305 100 Plus
Smox-RA 3171 CG2262-RA 880..2340 17..1477 7305 100 Plus
Mad-RB 3262 CG12399-RB 1600..1865 1178..1443 550 80.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8139222..8140682 1477..17 7305 100 Minus
2L 23513712 2L 3147453..3147718 1443..1178 550 80.5 Minus
2L 23513712 2L 3148646..3148728 330..248 205 83.1 Minus
Blast to na_te.dros performed on 2014-11-26 21:52:26 has no hits.

BS08206.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:13 Download gff for BS08206.complete
Subject Subject Range Query Range Percent Splice Strand
Smox-RA 1..1461 17..1477 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:39:01 Download gff for BS08206.complete
Subject Subject Range Query Range Percent Splice Strand
Smox-RA 839..2304 14..1481 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:29 Download gff for BS08206.complete
Subject Subject Range Query Range Percent Splice Strand
Smox-RA 885..2338 22..1475 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:30 Download gff for BS08206.complete
Subject Subject Range Query Range Percent Splice Strand
Smox-RA 847..2300 22..1475 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:43 Download gff for BS08206.complete
Subject Subject Range Query Range Percent Splice Strand
Smox-RA 885..2338 22..1475 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:43 Download gff for BS08206.complete
Subject Subject Range Query Range Percent Splice Strand
X 8139224..8140677 22..1475 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:29 Download gff for BS08206.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8033257..8034710 22..1475 100   Minus

BS08206.pep Sequence

Translation from 16 to 1476

> BS08206.pep
MLPFTPQVVKRLLALKKGNEDNSVEGKWSEKAVKNLVKKIKKNSQLEELE
RAISTQNCQTRCVTVPRSKPAPAGEHLRKGLPHVIYCRLWRWPDLQSQNE
LKPLDHCEYAFHLRKEEICINPYHYKKIELSILVPKSLPTPPDSIVDYPL
DNHTHQIPNNTDYNAAIIRSASLSPPQYMELGGAGPVSVSSSASSTPATA
AGGGGGPSSSSSSSSSAASAYQQQQQQLSFGQNMDSQSSVLSVGSSIPNT
GTPPPGYMSEDGDPIDPNDNMNMSRLTPPADAAPVMYHEPAFWCSISYYE
LNTRVGETFHASQPSITVDGFTDPSNSERFCLGLLSNVNRNEVVEQTRRH
IGKGVRLYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPPGCN
LKIFNNQEFAALLSQSVSQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTV
TSTPCWIELHLNGPLQWLDRVLTQMGSPRLPCSSMS*

BS08206.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Smox-PB 486 CG2262-PB 1..486 1..486 2597 100 Plus
Smox-PA 486 CG2262-PA 1..486 1..486 2597 100 Plus
Mad-PA 455 CG12399-PA 20..455 1..486 1261 53 Plus
Mad-PB 525 CG12399-PB 90..525 1..486 1261 53 Plus
Med-PB 697 CG1775-PB 353..688 185..475 435 35.4 Plus