Clone Sequence Records
BS08217.3prime Sequence
407 bp (332 high quality bases) assembled on 2006-01-10
> BS08217.3prime
ATGGTCTAGAAAGCTTCGTCAGCTCATTTTCACGCGTTTCCTTGGTGGTC
CAATTGGTGGGATTTGTTGTGTTGCGAGCGCACGAAATGCCTCCGCTATC
AAATGTGAATGTGTTGTGATCATATTTTGCCAGCCGGAGGTTTCCATCAC
ATCGGTGGCATGAGTATTTATGAAATCTATCGTTTGTGCTTTCAATTGAT
CCGCACTGTGGAGATCAGCTAATATTAGGGTTTCGGCTGCTGTTTCTACA
GAGAGATTGACGCACAGCGCCTCCTCGCACATCACTTTCAGCTTTTCGAG
TGCATACTTATCAGCAGCCGCTAGGAGATCATCAGCCATTTTTTCTAGAT
TGGGCGCCTTGCCCGTGTATATGAATCGCAGCATTTCTTTAAGAACCTCA
TGATCCA
BS08217.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9924-PC | 1212 | CG9924-RC | 824..1212 | 407..19 | 1945 | 100 | Minus |
CG9924-PE | 2490 | CG9924-RE | 2102..2490 | 407..19 | 1945 | 100 | Minus |
CG9924-PA | 1221 | CG9924-RA | 833..1221 | 407..19 | 1945 | 100 | Minus |
CG9924-PB | 1125 | CG9924-RB | 737..1125 | 407..19 | 1945 | 100 | Minus |
CG9924-PD | 1212 | CG9924-RD | 824..1212 | 407..19 | 1945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:24:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-RF | 3856 | CG12537-RF | 1343..1731 | 407..19 | 1945 | 100 | Minus |
rdx-RE | 4159 | CG12537-RE | 2540..2928 | 407..19 | 1945 | 100 | Minus |
rdx-RB | 2311 | CG12537-RB | 1362..1750 | 407..19 | 1945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13969186..13969330 | 19..163 | 725 | 100 | Plus |
3R | 32079331 | 3R | 13969397..13969541 | 164..308 | 725 | 100 | Plus |
3R | 32079331 | 3R | 13969608..13969708 | 307..407 | 505 | 100 | Plus |
Blast to na_te.dros performed 2015-02-03 11:24:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader1 | 4032 | invader1 INVADER 4032bp | 2149..2196 | 149..102 | 132 | 75 | Minus |
BS08217.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:55 Download gff for
BS08217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FBpp0099767 | 2103..2490 | 19..406 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:01 Download gff for
BS08217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9924-PD | 825..1212 | 19..406 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:40:11 Download gff for
BS08217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RB | 1363..1752 | 15..406 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:33:30 Download gff for
BS08217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RB | 1363..1752 | 15..406 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:33:30 Download gff for
BS08217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13969184..13969330 | 15..163 | 98 | <- | Plus |
3R | 13969397..13969539 | 164..306 | 100 | <- | Plus |
3R | 13969608..13969707 | 307..406 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:40:11 Download gff for
BS08217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9795119..9795261 | 164..306 | 100 | <- | Plus |
arm_3R | 9794906..9795052 | 15..163 | 98 | <- | Plus |
arm_3R | 9795330..9795429 | 307..406 | 100 | | Plus |
BS08217.5prime Sequence
922 bp (806 high quality bases) assembled on 2006-01-10
> BS08217.5prime
GAAGTTATCAGTCGACATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGC
CGGAAGTTAATACGCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAA
GTGGTTAAATTTAGTTATATGTGGACCATAAATAACTTTAGTTTTTGTCG
GGAAGAAATGGGTGAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTA
ATGACAAACTAAAATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAG
GAGAGCAAGGATTACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAA
ATCAGAAGTCAGAGCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTG
AGGAAACCAAAGCAATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGC
AAAGATTGGGGCTTCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGA
GGCCAACGGCCTGCTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCA
GCGTCGTGGCGGACAGCGTGAACATCTCCGGACAATCCAATATCGTGCAG
TTCAAAGTGCCCGAATGCAAGCTGTCCGAGGATCTTGGCAATCTATTTGA
CAACGAGAAGTTCAGCGACGTCACGCTCTCCGTGGGCGGTCGAGAGTTCC
AGGCGCACAAGGCCATATTGGCAGCGCGCAGCGATGTCTTTGCGGCCATG
TTCGAGCATGAGATGGAGGAGCGAAAGTTGAATCGTGTCGCCATAACCGA
TGTGGATCATGAGGTTCTTAAAGAAATGCTGCGATTCATATACACGGGCA
AGGCGCCCAATCTAGAAAAAATGGCTGATGATCTCCTAGCGGCTGCTGAT
AAGTATGCACTCGAAAAGCTGAAAGTGATGTGCGAGGAGGCGCTGTGCGT
CAATCTCTCTGTAAAACAGCAG
BS08217.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9924-PC | 1212 | CG9924-RC | 88..984 | 17..913 | 4485 | 100 | Plus |
CG9924-PE | 2490 | CG9924-RE | 1366..2262 | 17..913 | 4485 | 100 | Plus |
CG9924-PA | 1221 | CG9924-RA | 97..993 | 17..913 | 4485 | 100 | Plus |
CG9924-PB | 1125 | CG9924-RB | 1..897 | 17..913 | 4485 | 100 | Plus |
CG9924-PD | 1212 | CG9924-RD | 88..984 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-RF | 3856 | CG12537-RF | 607..1513 | 17..922 | 4510 | 99.9 | Plus |
rdx-RE | 4159 | CG12537-RE | 1804..2710 | 17..922 | 4510 | 99.9 | Plus |
rdx-RB | 2311 | CG12537-RB | 626..1532 | 17..922 | 4510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:00:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13969909..13970206 | 674..377 | 1490 | 100 | Minus |
3R | 32079331 | 3R | 13969608..13969790 | 853..671 | 915 | 100 | Minus |
3R | 32079331 | 3R | 13970278..13970440 | 378..216 | 815 | 100 | Minus |
3R | 32079331 | 3R | 13970505..13970634 | 219..90 | 650 | 100 | Minus |
3R | 32079331 | 3R | 13970950..13971029 | 96..17 | 400 | 100 | Minus |
3R | 32079331 | 3R | 13969480..13969541 | 913..852 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:00:44 has no hits.
BS08217.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:57 Download gff for
BS08217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FBpp0099767 | 1356..2272 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:02 Download gff for
BS08217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9924-PD | 78..994 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:40 Download gff for
BS08217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RB | 616..1532 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:12:45 Download gff for
BS08217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RB | 616..1532 | 9..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:12:45 Download gff for
BS08217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13969470..13969539 | 854..922 | 98 | <- | Minus |
3R | 13969608..13969786 | 675..853 | 100 | <- | Minus |
3R | 13969909..13970204 | 379..674 | 100 | <- | Minus |
3R | 13970278..13970439 | 217..378 | 100 | <- | Minus |
3R | 13970508..13970629 | 95..216 | 100 | <- | Minus |
3R | 13970952..13971039 | 9..94 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:40 Download gff for
BS08217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9795192..9795261 | 854..922 | 98 | <- | Minus |
arm_3R | 9795330..9795508 | 675..853 | 100 | <- | Minus |
arm_3R | 9795631..9795926 | 379..674 | 100 | <- | Minus |
arm_3R | 9796000..9796161 | 217..378 | 100 | <- | Minus |
arm_3R | 9796230..9796351 | 95..216 | 100 | <- | Minus |
arm_3R | 9796674..9796761 | 9..94 | 96 | | Minus |
BS08217.complete Sequence
1159 bp (1159 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636129
> BS08217.complete
GAAGTTATCAGTCGACATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGC
CGGAAGTTAATACGCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAA
GTGGTTAAATTTAGTTATATGTGGACCATAAATAACTTTAGTTTTTGTCG
GGAAGAAATGGGTGAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTA
ATGACAAACTAAAATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAG
GAGAGCAAGGATTACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAA
ATCAGAAGTCAGAGCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTG
AGGAAACCAAAGCAATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGC
AAAGATTGGGGCTTCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGA
GGCCAACGGCCTGCTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCA
GCGTCGTGGCGGACAGCGTGAACATCTCCGGACAATCCAATATCGTGCAG
TTCAAAGTGCCCGAATGCAAGCTGTCCGAGGATCTTGGCAATCTATTTGA
CAACGAGAAGTTCAGCGACGTCACGCTCTCCGTGGGCGGTCGAGAGTTCC
AGGCGCACAAGGCCATATTGGCAGCGCGCAGCGATGTCTTTGCGGCCATG
TTCGAGCATGAGATGGAGGAGCGAAAGTTGAATCGTGTCGCCATAACCGA
TGTGGATCATGAGGTTCTTAAAGAAATGCTGCGATTCATATACACGGGCA
AGGCGCCCAATCTAGAAAAAATGGCTGATGATCTCCTAGCGGCTGCTGAT
AAGTATGCACTCGAAAAGCTGAAAGTGATGTGCGAGGAGGCGCTGTGCGT
CAATCTCTCTGTAGAAACAGCAGCCGAAACCCTAATATTAGCTGATCTCC
ACAGTGCGGATCAATTGAAAGCACAAACGATAGATTTCATAAATACTCAT
GCCACCGATGTGATGGAAACCTCCGGCTGGCAAAATATGATCACAACACA
TTCACATTTGATAGCGGAGGCATTTCGTGCGCTCGCAACACAACAAATCC
CACCAATTGGACCACCAAGGAAACGCGTGAAAATGAGCTGACGAAGCTTT
CTAGACCAT
BS08217.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-RF | 1221 | CG12537-PF | 97..1221 | 17..1141 | 5625 | 100 | Plus |
rdx-RE | 2490 | CG12537-PE | 1366..2490 | 17..1141 | 5625 | 100 | Plus |
rdx-RB | 1125 | CG12537-PB | 1..1125 | 17..1141 | 5625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-RF | 3856 | CG12537-RF | 607..1731 | 17..1141 | 5625 | 100 | Plus |
rdx-RE | 4159 | CG12537-RE | 1804..2928 | 17..1141 | 5625 | 100 | Plus |
rdx-RB | 2311 | CG12537-RB | 626..1750 | 17..1141 | 5625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13969909..13970206 | 674..377 | 1490 | 100 | Minus |
3R | 32079331 | 3R | 13969608..13969790 | 853..671 | 915 | 100 | Minus |
3R | 32079331 | 3R | 13970278..13970440 | 378..216 | 815 | 100 | Minus |
3R | 32079331 | 3R | 13969186..13969330 | 1141..997 | 725 | 100 | Minus |
3R | 32079331 | 3R | 13969397..13969541 | 996..852 | 725 | 100 | Minus |
3R | 32079331 | 3R | 13970505..13970634 | 219..90 | 650 | 100 | Minus |
3R | 32079331 | 3R | 13970950..13971029 | 96..17 | 400 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 23:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader1 | 4032 | invader1 INVADER 4032bp | 2149..2196 | 1011..1058 | 132 | 75 | Plus |
BS08217.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:42 Download gff for
BS08217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RA | 87..1221 | 9..1141 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:44 Download gff for
BS08217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RA | 595..1731 | 9..1145 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:42 Download gff for
BS08217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RB | 626..1750 | 17..1143 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:42 Download gff for
BS08217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RA | 595..1731 | 9..1145 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:09 Download gff for
BS08217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RB | 626..1750 | 17..1143 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:09 Download gff for
BS08217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13969184..13969330 | 997..1143 | 98 | <- | Minus |
3R | 13969397..13969539 | 854..996 | 100 | <- | Minus |
3R | 13969608..13969786 | 675..853 | 100 | <- | Minus |
3R | 13969909..13970204 | 379..674 | 100 | <- | Minus |
3R | 13970278..13970439 | 217..378 | 100 | <- | Minus |
3R | 13970508..13970629 | 95..216 | 100 | <- | Minus |
3R | 13970952..13971029 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:42 Download gff for
BS08217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9796674..9796751 | 17..94 | 100 | | Minus |
arm_3R | 9794906..9795052 | 997..1143 | 98 | <- | Minus |
arm_3R | 9795119..9795261 | 854..996 | 100 | <- | Minus |
arm_3R | 9795330..9795508 | 675..853 | 100 | <- | Minus |
arm_3R | 9795631..9795926 | 379..674 | 100 | <- | Minus |
arm_3R | 9796000..9796161 | 217..378 | 100 | <- | Minus |
arm_3R | 9796230..9796351 | 95..216 | 100 | <- | Minus |
BS08217.pep Sequence
Translation from 16 to 1140
> BS08217.pep
MAVSRVPSPPLPEVNTPVAENWCYTQVKVVKFSYMWTINNFSFCREEMGE
VLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKSEVRA
KFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLL
PEDKLTIFCEVSVVADSVNISGQSNIVQFKVPECKLSEDLGNLFDNEKFS
DVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITDVDHEV
LKEMLRFIYTGKAPNLEKMADDLLAAADKYALEKLKVMCEEALCVNLSVE
TAAETLILADLHSADQLKAQTIDFINTHATDVMETSGWQNMITTHSHLIA
EAFRALATQQIPPIGPPRKRVKMS*
BS08217.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-PB | 374 | CG12537-PB | 1..374 | 1..374 | 1923 | 100 | Plus |
rdx-PC | 403 | CG12537-PC | 30..403 | 1..374 | 1923 | 100 | Plus |
rdx-PF | 406 | CG12537-PF | 33..406 | 1..374 | 1923 | 100 | Plus |
rdx-PA | 406 | CG12537-PA | 33..406 | 1..374 | 1923 | 100 | Plus |
rdx-PE | 829 | CG12537-PE | 456..829 | 1..374 | 1923 | 100 | Plus |