Clone BS08217 Report

Search the DGRC for BS08217

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:82
Well:17
Vector:pDNR-Dual
Associated Gene/Transcriptrdx-RB
Protein status:BS08217.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08217.3prime Sequence

407 bp (332 high quality bases) assembled on 2006-01-10

> BS08217.3prime
ATGGTCTAGAAAGCTTCGTCAGCTCATTTTCACGCGTTTCCTTGGTGGTC
CAATTGGTGGGATTTGTTGTGTTGCGAGCGCACGAAATGCCTCCGCTATC
AAATGTGAATGTGTTGTGATCATATTTTGCCAGCCGGAGGTTTCCATCAC
ATCGGTGGCATGAGTATTTATGAAATCTATCGTTTGTGCTTTCAATTGAT
CCGCACTGTGGAGATCAGCTAATATTAGGGTTTCGGCTGCTGTTTCTACA
GAGAGATTGACGCACAGCGCCTCCTCGCACATCACTTTCAGCTTTTCGAG
TGCATACTTATCAGCAGCCGCTAGGAGATCATCAGCCATTTTTTCTAGAT
TGGGCGCCTTGCCCGTGTATATGAATCGCAGCATTTCTTTAAGAACCTCA
TGATCCA

BS08217.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9924-PC 1212 CG9924-RC 824..1212 407..19 1945 100 Minus
CG9924-PE 2490 CG9924-RE 2102..2490 407..19 1945 100 Minus
CG9924-PA 1221 CG9924-RA 833..1221 407..19 1945 100 Minus
CG9924-PB 1125 CG9924-RB 737..1125 407..19 1945 100 Minus
CG9924-PD 1212 CG9924-RD 824..1212 407..19 1945 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-RF 3856 CG12537-RF 1343..1731 407..19 1945 100 Minus
rdx-RE 4159 CG12537-RE 2540..2928 407..19 1945 100 Minus
rdx-RB 2311 CG12537-RB 1362..1750 407..19 1945 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13969186..13969330 19..163 725 100 Plus
3R 32079331 3R 13969397..13969541 164..308 725 100 Plus
3R 32079331 3R 13969608..13969708 307..407 505 100 Plus
Blast to na_te.dros performed 2015-02-03 11:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
invader1 4032 invader1 INVADER 4032bp 2149..2196 149..102 132 75 Minus

BS08217.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:55 Download gff for BS08217.3prime
Subject Subject Range Query Range Percent Splice Strand
FBpp0099767 2103..2490 19..406 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:01 Download gff for BS08217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9924-PD 825..1212 19..406 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:40:11 Download gff for BS08217.3prime
Subject Subject Range Query Range Percent Splice Strand
rdx-RB 1363..1752 15..406 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:33:30 Download gff for BS08217.3prime
Subject Subject Range Query Range Percent Splice Strand
rdx-RB 1363..1752 15..406 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:33:30 Download gff for BS08217.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13969184..13969330 15..163 98 <- Plus
3R 13969397..13969539 164..306 100 <- Plus
3R 13969608..13969707 307..406 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:40:11 Download gff for BS08217.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9795119..9795261 164..306 100 <- Plus
arm_3R 9794906..9795052 15..163 98 <- Plus
arm_3R 9795330..9795429 307..406 100   Plus

BS08217.5prime Sequence

922 bp (806 high quality bases) assembled on 2006-01-10

> BS08217.5prime
GAAGTTATCAGTCGACATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGC
CGGAAGTTAATACGCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAA
GTGGTTAAATTTAGTTATATGTGGACCATAAATAACTTTAGTTTTTGTCG
GGAAGAAATGGGTGAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTA
ATGACAAACTAAAATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAG
GAGAGCAAGGATTACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAA
ATCAGAAGTCAGAGCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTG
AGGAAACCAAAGCAATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGC
AAAGATTGGGGCTTCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGA
GGCCAACGGCCTGCTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCA
GCGTCGTGGCGGACAGCGTGAACATCTCCGGACAATCCAATATCGTGCAG
TTCAAAGTGCCCGAATGCAAGCTGTCCGAGGATCTTGGCAATCTATTTGA
CAACGAGAAGTTCAGCGACGTCACGCTCTCCGTGGGCGGTCGAGAGTTCC
AGGCGCACAAGGCCATATTGGCAGCGCGCAGCGATGTCTTTGCGGCCATG
TTCGAGCATGAGATGGAGGAGCGAAAGTTGAATCGTGTCGCCATAACCGA
TGTGGATCATGAGGTTCTTAAAGAAATGCTGCGATTCATATACACGGGCA
AGGCGCCCAATCTAGAAAAAATGGCTGATGATCTCCTAGCGGCTGCTGAT
AAGTATGCACTCGAAAAGCTGAAAGTGATGTGCGAGGAGGCGCTGTGCGT
CAATCTCTCTGTAAAACAGCAG

BS08217.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9924-PC 1212 CG9924-RC 88..984 17..913 4485 100 Plus
CG9924-PE 2490 CG9924-RE 1366..2262 17..913 4485 100 Plus
CG9924-PA 1221 CG9924-RA 97..993 17..913 4485 100 Plus
CG9924-PB 1125 CG9924-RB 1..897 17..913 4485 100 Plus
CG9924-PD 1212 CG9924-RD 88..984 17..913 4485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-RF 3856 CG12537-RF 607..1513 17..922 4510 99.9 Plus
rdx-RE 4159 CG12537-RE 1804..2710 17..922 4510 99.9 Plus
rdx-RB 2311 CG12537-RB 626..1532 17..922 4510 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13969909..13970206 674..377 1490 100 Minus
3R 32079331 3R 13969608..13969790 853..671 915 100 Minus
3R 32079331 3R 13970278..13970440 378..216 815 100 Minus
3R 32079331 3R 13970505..13970634 219..90 650 100 Minus
3R 32079331 3R 13970950..13971029 96..17 400 100 Minus
3R 32079331 3R 13969480..13969541 913..852 310 100 Minus
Blast to na_te.dros performed on 2015-02-10 03:00:44 has no hits.

BS08217.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:57 Download gff for BS08217.5prime
Subject Subject Range Query Range Percent Splice Strand
FBpp0099767 1356..2272 9..922 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:02 Download gff for BS08217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9924-PD 78..994 9..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:40 Download gff for BS08217.5prime
Subject Subject Range Query Range Percent Splice Strand
rdx-RB 616..1532 9..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:12:45 Download gff for BS08217.5prime
Subject Subject Range Query Range Percent Splice Strand
rdx-RB 616..1532 9..922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:12:45 Download gff for BS08217.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13969470..13969539 854..922 98 <- Minus
3R 13969608..13969786 675..853 100 <- Minus
3R 13969909..13970204 379..674 100 <- Minus
3R 13970278..13970439 217..378 100 <- Minus
3R 13970508..13970629 95..216 100 <- Minus
3R 13970952..13971039 9..94 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:40 Download gff for BS08217.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9795192..9795261 854..922 98 <- Minus
arm_3R 9795330..9795508 675..853 100 <- Minus
arm_3R 9795631..9795926 379..674 100 <- Minus
arm_3R 9796000..9796161 217..378 100 <- Minus
arm_3R 9796230..9796351 95..216 100 <- Minus
arm_3R 9796674..9796761 9..94 96   Minus

BS08217.complete Sequence

1159 bp (1159 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636129

> BS08217.complete
GAAGTTATCAGTCGACATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGC
CGGAAGTTAATACGCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAA
GTGGTTAAATTTAGTTATATGTGGACCATAAATAACTTTAGTTTTTGTCG
GGAAGAAATGGGTGAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTA
ATGACAAACTAAAATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAG
GAGAGCAAGGATTACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAA
ATCAGAAGTCAGAGCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTG
AGGAAACCAAAGCAATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGC
AAAGATTGGGGCTTCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGA
GGCCAACGGCCTGCTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCA
GCGTCGTGGCGGACAGCGTGAACATCTCCGGACAATCCAATATCGTGCAG
TTCAAAGTGCCCGAATGCAAGCTGTCCGAGGATCTTGGCAATCTATTTGA
CAACGAGAAGTTCAGCGACGTCACGCTCTCCGTGGGCGGTCGAGAGTTCC
AGGCGCACAAGGCCATATTGGCAGCGCGCAGCGATGTCTTTGCGGCCATG
TTCGAGCATGAGATGGAGGAGCGAAAGTTGAATCGTGTCGCCATAACCGA
TGTGGATCATGAGGTTCTTAAAGAAATGCTGCGATTCATATACACGGGCA
AGGCGCCCAATCTAGAAAAAATGGCTGATGATCTCCTAGCGGCTGCTGAT
AAGTATGCACTCGAAAAGCTGAAAGTGATGTGCGAGGAGGCGCTGTGCGT
CAATCTCTCTGTAGAAACAGCAGCCGAAACCCTAATATTAGCTGATCTCC
ACAGTGCGGATCAATTGAAAGCACAAACGATAGATTTCATAAATACTCAT
GCCACCGATGTGATGGAAACCTCCGGCTGGCAAAATATGATCACAACACA
TTCACATTTGATAGCGGAGGCATTTCGTGCGCTCGCAACACAACAAATCC
CACCAATTGGACCACCAAGGAAACGCGTGAAAATGAGCTGACGAAGCTTT
CTAGACCAT

BS08217.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-RF 1221 CG12537-PF 97..1221 17..1141 5625 100 Plus
rdx-RE 2490 CG12537-PE 1366..2490 17..1141 5625 100 Plus
rdx-RB 1125 CG12537-PB 1..1125 17..1141 5625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-RF 3856 CG12537-RF 607..1731 17..1141 5625 100 Plus
rdx-RE 4159 CG12537-RE 1804..2928 17..1141 5625 100 Plus
rdx-RB 2311 CG12537-RB 626..1750 17..1141 5625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13969909..13970206 674..377 1490 100 Minus
3R 32079331 3R 13969608..13969790 853..671 915 100 Minus
3R 32079331 3R 13970278..13970440 378..216 815 100 Minus
3R 32079331 3R 13969186..13969330 1141..997 725 100 Minus
3R 32079331 3R 13969397..13969541 996..852 725 100 Minus
3R 32079331 3R 13970505..13970634 219..90 650 100 Minus
3R 32079331 3R 13970950..13971029 96..17 400 100 Minus
Blast to na_te.dros performed 2014-11-27 23:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
invader1 4032 invader1 INVADER 4032bp 2149..2196 1011..1058 132 75 Plus

BS08217.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:42 Download gff for BS08217.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RA 87..1221 9..1141 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:44 Download gff for BS08217.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RA 595..1731 9..1145 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:42 Download gff for BS08217.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RB 626..1750 17..1143 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:42 Download gff for BS08217.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RA 595..1731 9..1145 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:09 Download gff for BS08217.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RB 626..1750 17..1143 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:09 Download gff for BS08217.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13969184..13969330 997..1143 98 <- Minus
3R 13969397..13969539 854..996 100 <- Minus
3R 13969608..13969786 675..853 100 <- Minus
3R 13969909..13970204 379..674 100 <- Minus
3R 13970278..13970439 217..378 100 <- Minus
3R 13970508..13970629 95..216 100 <- Minus
3R 13970952..13971029 17..94 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:42 Download gff for BS08217.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9796674..9796751 17..94 100   Minus
arm_3R 9794906..9795052 997..1143 98 <- Minus
arm_3R 9795119..9795261 854..996 100 <- Minus
arm_3R 9795330..9795508 675..853 100 <- Minus
arm_3R 9795631..9795926 379..674 100 <- Minus
arm_3R 9796000..9796161 217..378 100 <- Minus
arm_3R 9796230..9796351 95..216 100 <- Minus

BS08217.pep Sequence

Translation from 16 to 1140

> BS08217.pep
MAVSRVPSPPLPEVNTPVAENWCYTQVKVVKFSYMWTINNFSFCREEMGE
VLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKSEVRA
KFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLL
PEDKLTIFCEVSVVADSVNISGQSNIVQFKVPECKLSEDLGNLFDNEKFS
DVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITDVDHEV
LKEMLRFIYTGKAPNLEKMADDLLAAADKYALEKLKVMCEEALCVNLSVE
TAAETLILADLHSADQLKAQTIDFINTHATDVMETSGWQNMITTHSHLIA
EAFRALATQQIPPIGPPRKRVKMS*

BS08217.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-PB 374 CG12537-PB 1..374 1..374 1923 100 Plus
rdx-PC 403 CG12537-PC 30..403 1..374 1923 100 Plus
rdx-PF 406 CG12537-PF 33..406 1..374 1923 100 Plus
rdx-PA 406 CG12537-PA 33..406 1..374 1923 100 Plus
rdx-PE 829 CG12537-PE 456..829 1..374 1923 100 Plus