Clone Sequence Records
BS08220.3prime Sequence
885 bp (697 high quality bases) assembled on 2006-01-10
> BS08220.3prime
ATGGTCTAGAAAGCTTTCAGACCACGTCCGTCACGCCCACTCCGGTGTAC
TGGCAGGCGGAGAGTCCGGCGGAATTGGACCTCGACACGGGGGAGGGGGC
GGAGTAGGGGCTGCCGAATCCGGCGGAGGCGTGCTGCTTAGCCTTCAGCC
GCAGGGTGGCAATGCTCGAGCTCATGCTGCTGCTCATGCAGGGCTCGGCG
GCGGAGCGGTACATGTACGGATTGGCGGGGGTGGTGTACGGACAGGGGGC
GCCCACGGCTCCCACGTTGCTGGTGTTGCTCAAGGACGAGCCCATCGAAC
CCGGCAGCATGGATGCGTTGTTCATGCTGACCGCCACGCCACTGGCGCCC
GTGTTGAAGCAGTTCACCGAGTTCTGGTGATGATTGCCGGCCACCATCGA
TCCGAGTGGGTTCACTGGCCACGGAAAGGGCTTGGTTCCCAGCGGCGAGG
GCACCTTGGTCCAGTTGTTATACGGATACGAGCTGTACAGCGAGTCATCC
GCGAACGGCTGCATGAACTGCGTTCCGAATCCGGACTTAAAGTCCGCCGC
CGCCACTGCCGCGTTCATCGCGTTCCGCTCCCTCTTGCGCCACTTGGCCC
GCCGATTCTTGAACCACACCCTGACGCGGGCCTCTGTAAGATTGGTCCAC
ATGGCGATCTCTTCGCGGGTGGACATGTCCGGATACCTGTTCCGGCTGAA
GGTGTGCTCCAGCTCCTGGAGCTGTTGCGAGGTGAAGTGTGTCCTCTGGC
GCCGCTGCCTCTTGTTCTTCTTGTCGTTCTTCGGCTCCTCGCCACTGGTG
GTCATCGGCTCATCGTGCCCGGAACTTGATATGTTTTCTGTCTTGATCGT
GGTTTCGTTTACACTGCGATTGCCATCTTTGCGAT
BS08220.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1447-PA | 1530 | Ptx1-RA | 662..1530 | 885..17 | 4345 | 100 | Minus |
| CG1447-PC | 1545 | Ptx1-RC | 677..1545 | 885..17 | 4345 | 100 | Minus |
| CG1447-PB | 957 | Ptx1-RB | 89..957 | 885..17 | 4345 | 100 | Minus |
| CG2851-PA | 1260 | Gsc-RA | 993..1029 | 620..584 | 160 | 97.2 | Minus |
| CG11294-PA | 786 | CG11294-RA | 207..243 | 620..584 | 135 | 94.5 | Minus |
| CG2819-PA | 1074 | Pph13-RA | 165..201 | 620..584 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptx1-RE | 3025 | CG1447-RE | 1743..2611 | 885..17 | 4345 | 100 | Minus |
| Ptx1-RC | 3571 | CG1447-RC | 1758..2626 | 885..17 | 4345 | 100 | Minus |
| Ptx1-RA | 3025 | CG1447-RA | 1743..2611 | 885..17 | 4345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:30:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30929134..30929737 | 620..17 | 3020 | 100 | Minus |
| 3R | 32079331 | 3R | 30924312..30924569 | 874..617 | 1290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:30:05 has no hits.
BS08220.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:58 Download gff for
BS08220.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptx1-PA | 662..1530 | 17..885 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:03 Download gff for
BS08220.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1447-PB | 89..957 | 17..885 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:32:11 Download gff for
BS08220.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptx1-RC | 1758..2626 | 17..885 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:46 Download gff for
BS08220.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptx1-RA | 1743..2611 | 17..885 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:46 Download gff for
BS08220.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30924312..30924566 | 620..874 | 100 | -> | Minus |
| 3R | 30929135..30929737 | 17..619 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:32:11 Download gff for
BS08220.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26750034..26750288 | 620..874 | 100 | -> | Minus |
| arm_3R | 26754857..26755459 | 17..619 | 100 | | Minus |
BS08220.5prime Sequence
870 bp (814 high quality bases) assembled on 2006-01-10
> BS08220.5prime
GAAGTTATCAGTCGACATGGACCGCTCCTCCGCCGTCGGCGGTTGCGGCG
GGGGCGGCGGTCTGGGAGTGGGCGTGGTCACCAGCTCGGCCACGGCCTTG
GGACCGGGTGGCCTGACCAACGGGGGCGGCGGAGTGGTCAGTGGCGCACT
CAACGGATTGGAGGCCATGTCGGCCGAGTCCACGGGTCTGTGCCTGCAGG
ATCTGGTGAGTGCCGGGACGGCCAACGGAGCAGGCTCCGCAGGATCGGCA
GAGAGTGCCACCACCACCAGCACGGCACTGAGCAGCGGCAGCACCGGAAG
CTCCACGGTCAACGGAGGAGGCAGCAGCACCTCCGGCACGGAGCACCTGC
ACAGCCACCACAGCCTGCACGACTCCAGCTCGTCGGTCAGCATCTCACCC
GCCATCTCGAGCCTGATGCCCATCAGCAGCCTGAGCCACTTGCACCACTC
CGCGGGCCAGGACCTGGTGGGTGGCTACTCCCAGCACCCGCATCACACGG
TGGTGCCGCCGCACACGCCCAAGCACGAGCCGCTCGAGAAACTCAGAATT
TGGGCCGAAACCGGCGATTTCCGTGATAGTCATAGCTCCATGACCGCCGT
AGCAAATAGTTTGGATAGCACCCACTTGAACAACTTTCAGACGTCATCGA
CATCCTCGATATCGAACCGGAGTCGGGATCGCAAAGATGGCAATCGCAGT
GTAAACGAAACCACGATCAAGACAGAAAACATATCAAGTTCCGGGCACGA
TGAGCCGATGACCACCAGTGGCGAGGAGCCGAAGAACGACAAGAAGAACA
AGAGGCAGCGGCGCCAGAGGACACACTTCACCTCGCAACAGCTCCAGGAG
CTGGAGCACACCTTCAGCCG
BS08220.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1447-PA | 1530 | Ptx1-RA | 1..854 | 17..870 | 4270 | 100 | Plus |
| CG1447-PC | 1545 | Ptx1-RC | 1..532 | 17..548 | 2660 | 100 | Plus |
| CG1447-PC | 1545 | Ptx1-RC | 548..869 | 549..870 | 1610 | 100 | Plus |
| CG1447-PB | 957 | Ptx1-RB | 1..281 | 590..870 | 1405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptx1-RE | 3025 | CG1447-RE | 1081..1935 | 16..870 | 4275 | 100 | Plus |
| Ptx1-RA | 3025 | CG1447-RA | 1081..1935 | 16..870 | 4275 | 100 | Plus |
| Ptx1-RC | 3571 | CG1447-RC | 1081..1950 | 16..870 | 4115 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30916189..30916721 | 16..548 | 2665 | 100 | Plus |
| 3R | 32079331 | 3R | 30924312..30924493 | 689..870 | 910 | 100 | Plus |
| 3R | 32079331 | 3R | 30923418..30923559 | 549..690 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:52:37 has no hits.
BS08220.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:36:59 Download gff for
BS08220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptx1-PA | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:05 Download gff for
BS08220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1447-PA | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:52:28 Download gff for
BS08220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptx1-RA | 1073..1935 | 6..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:45 Download gff for
BS08220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptx1-RA | 1073..1935 | 6..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:45 Download gff for
BS08220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30916181..30916721 | 6..548 | 99 | -> | Plus |
| 3R | 30923418..30923558 | 549..689 | 100 | -> | Plus |
| 3R | 30924313..30924493 | 690..870 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:52:28 Download gff for
BS08220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26741903..26742443 | 6..548 | 99 | -> | Plus |
| arm_3R | 26749140..26749280 | 549..689 | 100 | -> | Plus |
| arm_3R | 26750035..26750215 | 690..870 | 100 | | Plus |
BS08220.complete Sequence
1562 bp (1562 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636130
> BS08220.complete
GAAGTTATCAGTCGACATGGACCGCTCCTCCGCCGTCGGCGGTTGCGGCG
GGGGCGGCGGTCTGGGAGTGGGCGTGGTCACCAGCTCGGCCACGGCCTTG
GGACCGGGTGGCCTGACCAACGGGGGCGGCGGAGTGGTCAGTGGCGCACT
CAACGGATTGGAGGCCATGTCGGCCGAGTCCACGGGTCTGTGCCTGCAGG
ATCTGGTGAGTGCCGGGACGGCCAACGGAGCAGGCTCCGCAGGATCGGCA
GAGAGTGCCACCACCACCAGCACGGCACTGAGCAGCGGCAGCACCGGAAG
CTCCACGGTCAACGGAGGAGGCAGCAGCACCTCCGGCACGGAGCACCTGC
ACAGCCACCACAGCCTGCACGACTCCAGCTCGTCGGTCAGCATCTCACCC
GCCATCTCGAGCCTGATGCCCATCAGCAGCCTGAGCCACTTGCACCACTC
CGCGGGCCAGGACCTGGTGGGTGGCTACTCCCAGCACCCGCATCACACGG
TGGTGCCGCCGCACACGCCCAAGCACGAGCCGCTCGAGAAACTCAGAATT
TGGGCCGAAACCGGCGATTTCCGTGATAGTCATAGCTCCATGACCGCCGT
AGCAAATAGTTTGGATAGCACCCACTTGAACAACTTTCAGACGTCATCGA
CATCCTCGATATCGAACCGGAGTCGGGATCGCAAAGATGGCAATCGCAGT
GTAAACGAAACCACGATCAAGACAGAAAACATATCAAGTTCCGGGCACGA
TGAGCCGATGACCACCAGTGGCGAGGAGCCGAAGAACGACAAGAAGAACA
AGAGGCAGCGGCGCCAGAGGACACACTTCACCTCGCAACAGCTCCAGGAG
CTGGAGCACACCTTCAGCCGGAACAGGTATCCGGACATGTCCACCCGCGA
AGAGATCGCCATGTGGACCAATCTTACAGAGGCCCGCGTCAGGGTGTGGT
TCAAGAATCGGCGGGCCAAGTGGCGCAAGAGGGAGCGGAACGCGATGAAC
GCGGCAGTGGCGGCGGCGGACTTTAAGTCCGGATTCGGAACGCAGTTCAT
GCAGCCGTTCGCGGATGACTCGCTGTACAGCTCGTATCCGTATAACAACT
GGACCAAGGTGCCCTCGCCGCTGGGAACCAAGCCCTTTCCGTGGCCAGTG
AACCCACTCGGATCGATGGTGGCCGGCAATCATCACCAGAACTCGGTGAA
CTGCTTCAACACGGGCGCCAGTGGCGTGGCGGTCAGCATGAACAACGCAT
CCATGCTGCCGGGTTCGATGGGCTCGTCCTTGAGCAACACCAGCAACGTG
GGAGCCGTGGGCGCCCCCTGTCCGTACACCACCCCCGCCAATCCGTACAT
GTACCGCTCCGCCGCCGAGCCCTGCATGAGCAGCAGCATGAGCTCGAGCA
TTGCCACCCTGCGGCTGAAGGCTAAGCAGCACGCCTCCGCCGGATTCGGC
AGCCCCTACTCCGCCCCCTCCCCCGTGTCGAGGTCCAATTCCGCCGGACT
CTCCGCCTGCCAGTACACCGGAGTGGGCGTGACGGACGTGGTCTGAAAGC
TTTCTAGACCAT
BS08220.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptx1-RE | 1833 | CG1447-PE | 1..1530 | 17..1546 | 7650 | 100 | Plus |
| Ptx1-RA | 1530 | CG1447-PA | 1..1530 | 17..1546 | 7650 | 100 | Plus |
| Ptx1-RC | 1545 | CG1447-PC | 1..1545 | 17..1546 | 7465 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptx1-RE | 3025 | CG1447-RE | 1081..2611 | 16..1546 | 7655 | 100 | Plus |
| Ptx1-RA | 3025 | CG1447-RA | 1081..2611 | 16..1546 | 7655 | 100 | Plus |
| Ptx1-RC | 3571 | CG1447-RC | 1081..2626 | 16..1546 | 7470 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30929134..30929737 | 943..1546 | 3020 | 100 | Plus |
| 3R | 32079331 | 3R | 30916189..30916721 | 16..548 | 2665 | 100 | Plus |
| 3R | 32079331 | 3R | 30924312..30924569 | 689..946 | 1290 | 100 | Plus |
| 3R | 32079331 | 3R | 30923418..30923559 | 549..690 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:33:18 has no hits.
BS08220.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:43 Download gff for
BS08220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptx1-RD | 502..2040 | 6..1546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:17 Download gff for
BS08220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptx1-RD | 511..2039 | 17..1545 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:20 Download gff for
BS08220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptx1-RA | 1082..2610 | 17..1545 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:43 Download gff for
BS08220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptx1-RD | 502..2040 | 6..1546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:13:39 Download gff for
BS08220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptx1-RA | 1082..2610 | 17..1545 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:13:39 Download gff for
BS08220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30916190..30916721 | 17..548 | 100 | -> | Plus |
| 3R | 30923418..30923558 | 549..689 | 100 | -> | Plus |
| 3R | 30924313..30924566 | 690..943 | 100 | -> | Plus |
| 3R | 30929135..30929736 | 944..1545 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:20 Download gff for
BS08220.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26741912..26742443 | 17..548 | 100 | -> | Plus |
| arm_3R | 26749140..26749280 | 549..689 | 100 | -> | Plus |
| arm_3R | 26750035..26750288 | 690..943 | 100 | -> | Plus |
| arm_3R | 26754857..26755458 | 944..1545 | 100 | | Plus |
BS08220.pep Sequence
Translation from 16 to 1545
> BS08220.pep
MDRSSAVGGCGGGGGLGVGVVTSSATALGPGGLTNGGGGVVSGALNGLEA
MSAESTGLCLQDLVSAGTANGAGSAGSAESATTTSTALSSGSTGSSTVNG
GGSSTSGTEHLHSHHSLHDSSSSVSISPAISSLMPISSLSHLHHSAGQDL
VGGYSQHPHHTVVPPHTPKHEPLEKLRIWAETGDFRDSHSSMTAVANSLD
STHLNNFQTSSTSSISNRSRDRKDGNRSVNETTIKTENISSSGHDEPMTT
SGEEPKNDKKNKRQRRQRTHFTSQQLQELEHTFSRNRYPDMSTREEIAMW
TNLTEARVRVWFKNRRAKWRKRERNAMNAAVAAADFKSGFGTQFMQPFAD
DSLYSSYPYNNWTKVPSPLGTKPFPWPVNPLGSMVAGNHHQNSVNCFNTG
ASGVAVSMNNASMLPGSMGSSLSNTSNVGAVGAPCPYTTPANPYMYRSAA
EPCMSSSMSSSIATLRLKAKQHASAGFGSPYSAPSPVSRSNSAGLSACQY
TGVGVTDVV*
BS08220.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptx1-PE | 610 | CG1447-PE | 1..509 | 1..509 | 2658 | 100 | Plus |
| Ptx1-PA | 509 | CG1447-PA | 1..509 | 1..509 | 2658 | 100 | Plus |
| Ptx1-PC | 514 | CG1447-PC | 1..514 | 1..509 | 2641 | 98.8 | Plus |
| Vsx1-PB | 837 | CG4136-PB | 207..455 | 3..324 | 272 | 29.2 | Plus |
| Vsx1-PA | 837 | CG4136-PA | 207..455 | 3..324 | 272 | 29.2 | Plus |
