Clone Sequence Records
BS08226.3prime Sequence
401 bp (306 high quality bases) assembled on 2006-01-10
> BS08226.3prime
ATGGTCTAGAAAGCTTCGTCAGGTGGTGTCGTTGCCAAGGCCGTTCTTCT
GGTCCAGCTTATTCGAGCCCATCTTCACCATGTACACGAAGAATGTGATG
ATCTCCTTCTCCTTGATAGGTATTGTCTTGAAGTGTTTCATAATTGTATC
CGCCAGCTGCGCCCGCTTCATGCCCTGCCTCGTTTGGACCTTGAAGTGGC
GCTTGTAGCGTCGCAGCGTGCTCACGCCCAGCTGGTAGAGATCGGGGAAC
TCGTGCAGGTCCGTGTCCGTCTCGTTGCTGTCGTCCTCGCTGTCCTTGCG
CCGACGCTTGGTGCGCACCGACTGGATGCGCTCCTTGTGGTGGTCACAGA
TGTAAATGTGCTGCGCGGCCGGATCGCTGCTGAGCTTGAGCCGCTTTTGG
G
BS08226.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4756-PA | 522 | CG4756-RA | 140..522 | 401..19 | 1890 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:10:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sap30-RB | 1994 | CG4756-RB | 663..1045 | 401..19 | 1900 | 99.7 | Minus |
| Sap30-RA | 1669 | CG4756-RA | 338..720 | 401..19 | 1900 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16788089..16788342 | 401..148 | 1270 | 100 | Minus |
| X | 23542271 | X | 16788567..16788695 | 147..19 | 630 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:10:34 has no hits.
BS08226.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:03 Download gff for
BS08226.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4756-PA | 140..522 | 19..401 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:10 Download gff for
BS08226.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4756-PA | 140..522 | 19..401 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:40:09 Download gff for
BS08226.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap30-RA | 334..720 | 13..401 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:54 Download gff for
BS08226.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap30-RA | 338..724 | 13..401 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:54 Download gff for
BS08226.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16788089..16788342 | 148..401 | 100 | -> | Minus |
| X | 16788567..16788699 | 13..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:40:09 Download gff for
BS08226.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16682122..16682375 | 148..401 | 100 | -> | Minus |
| arm_X | 16682600..16682732 | 13..147 | 97 | | Minus |
BS08226.5prime Sequence
554 bp (553 high quality bases) assembled on 2006-01-10
> BS08226.5prime
GAAGTTATCAGTCGACATGAACAACGGATTCAGCACCGGCGAGGAGGACA
GTCGCGGGCACACGGACCAAACGTGCTGCCTAATCGACGACATGGAGCGG
TGTCGCAACCAGGCTGGCTACGCCAGCTACTCCAAGCGCATCCAGAAGAC
GGTGGCCCAAAAGCGGCTCAAGCTCAGCAGCGATCCGGCCGCGCAGCACA
TTTACATCTGTGACCACCACAAGGAGCGCATCCAGTCGGTGCGCACCAAG
CGTCGGCGCAAGGACAGCGAGGACGACAGCAACGAGACGGACACGGACCT
GCACGAGTTCCCCGATCTCTACCAGCTGGGCGTGAGCACGCTGCGACGCT
ACAAGCGCCACTTCAAGGTCCAAACGAGGCAGGGCATGAAGCGGGCGCAG
CTGGCGGATACAATTATGAAACACTTCAAGACAATACCTATCAAGGAGAA
GGAGATCATCACATTCTTCGTGTACATGGTGAAGATGGGCTCGAATAAGC
TGGACCAGAAGAACGGCCTTGGCAACGACACCACCTGACGAAGCTTTCTA
GACC
BS08226.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4756-PA | 522 | CG4756-RA | 1..522 | 17..538 | 2585 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sap30-RB | 1994 | CG4756-RB | 524..1045 | 17..538 | 2595 | 99.8 | Plus |
| Sap30-RA | 1669 | CG4756-RA | 199..720 | 17..538 | 2595 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16787950..16788342 | 17..409 | 1965 | 100 | Plus |
| X | 23542271 | X | 16788567..16788695 | 410..538 | 630 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-02 10:02:47 has no hits.
BS08226.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:04 Download gff for
BS08226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4756-PA | 1..522 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:12 Download gff for
BS08226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4756-PA | 1..522 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:26:20 Download gff for
BS08226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap30-RA | 191..720 | 9..544 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:36:07 Download gff for
BS08226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap30-RA | 195..724 | 9..544 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:36:07 Download gff for
BS08226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16787946..16788342 | 9..409 | 99 | -> | Plus |
| X | 16788567..16788699 | 410..544 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:26:20 Download gff for
BS08226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16681979..16682375 | 9..409 | 99 | -> | Plus |
| arm_X | 16682600..16682732 | 410..544 | 97 | | Plus |
BS08226.complete Sequence
556 bp (556 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636131
> BS08226.complete
GAAGTTATCAGTCGACATGAACAACGGATTCAGCACCGGCGAGGAGGACA
GTCGCGGGCACACGGACCAAACGTGCTGCCTAATCGACGACATGGAGCGG
TGTCGCAACCAGGCTGGCTACGCCAGCTACTCCAAGCGCATCCAGAAGAC
GGTGGCCCAAAAGCGGCTCAAGCTCAGCAGCGATCCGGCCGCGCAGCACA
TTTACATCTGTGACCACCACAAGGAGCGCATCCAGTCGGTGCGCACCAAG
CGTCGGCGCAAGGACAGCGAGGACGACAGCAACGAGACGGACACGGACCT
GCACGAGTTCCCCGATCTCTACCAGCTGGGCGTGAGCACGCTGCGACGCT
ACAAGCGCCACTTCAAGGTCCAAACGAGGCAGGGCATGAAGCGGGCGCAG
CTGGCGGATACAATTATGAAACACTTCAAGACAATACCTATCAAGGAGAA
GGAGATCATCACATTCTTCGTGTACATGGTGAAGATGGGCTCGAATAAGC
TGGACCAGAAGAACGGCCTTGGCAACGACACCACCTGACGAAGCTTTCTA
GACCAT
BS08226.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sap30-RB | 522 | CG4756-PB | 1..522 | 17..538 | 2595 | 99.8 | Plus |
| Sap30-RA | 522 | CG4756-PA | 1..522 | 17..538 | 2595 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sap30-RB | 1994 | CG4756-RB | 524..1045 | 17..538 | 2595 | 99.8 | Plus |
| Sap30-RA | 1669 | CG4756-RA | 199..720 | 17..538 | 2595 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:54:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16787950..16788342 | 17..409 | 1965 | 100 | Plus |
| X | 23542271 | X | 16788567..16788695 | 410..538 | 630 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:54:59 has no hits.
BS08226.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:49 Download gff for
BS08226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4756-RA | 1..522 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:02 Download gff for
BS08226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4756-RA | 191..720 | 9..544 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:36 Download gff for
BS08226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap30-RA | 195..718 | 17..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:49 Download gff for
BS08226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4756-RA | 191..720 | 9..544 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:36 Download gff for
BS08226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap30-RA | 199..722 | 17..540 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:36 Download gff for
BS08226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16787950..16788342 | 17..409 | 100 | -> | Plus |
| X | 16788567..16788697 | 410..540 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:36 Download gff for
BS08226.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16681983..16682375 | 17..409 | 100 | -> | Plus |
| arm_X | 16682600..16682730 | 410..540 | 98 | | Plus |
BS08226.pep Sequence
Translation from 16 to 537
> BS08226.pep
MNNGFSTGEEDSRGHTDQTCCLIDDMERCRNQAGYASYSKRIQKTVAQKR
LKLSSDPAAQHIYICDHHKERIQSVRTKRRRKDSEDDSNETDTDLHEFPD
LYQLGVSTLRRYKRHFKVQTRQGMKRAQLADTIMKHFKTIPIKEKEIITF
FVYMVKMGSNKLDQKNGLGNDTT*
BS08226.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sap30-PB | 173 | CG4756-PB | 1..173 | 1..173 | 913 | 100 | Plus |
| Sap30-PA | 173 | CG4756-PA | 1..173 | 1..173 | 913 | 100 | Plus |
