Clone BS08230 Report

Search the DGRC for BS08230

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:82
Well:30
Vector:pDNR-Dual
Associated Gene/Transcriptcaup-RA
Protein status:BS08230.pep: full length peptide match
Sequenced Size:2114

Clone Sequence Records

BS08230.3prime Sequence

886 bp (797 high quality bases) assembled on 2006-01-10

> BS08230.3prime
ATGGTCTAGAAAGCTTTTACGACCCGGAACGCCCGCCCTCAGTTAGATAG
GCATTACTAGTGACGCCCATGTGCCCATGCCCATGCCCGAGTCCATGTCC
ATGCCCGAGTCCATGTCCGTGGCCATGCCCATGTCCATGACTGTGTCCGT
GTCCATATCCACTGTCCGTATTACTGTACAAAATGTTGACCATGGAAGCC
ACCGTCACCGGAGTGACGGAATGCATCGAGGAACTGTGGCTGCTCCCGCT
GCTGCTGCTGCTGCCGCCGCTGCTGTTCAGCTTCATAGTGGGTGGTGTCT
GGGGCGGAGTATCGGGCTGGATCTCGGGAAACCCCACCCGCTGTGGCGCC
GGATGGATATGAGTGGGTGGCAGCTTGCCGGTGGAGGAACTGGAACTGCT
GCTGCTGGGCAGATGCATGCCCATGGCTTCGGTGTACGCCGTAGGTATCC
GCGAATATGGCGATCCGCCGGCGTAGCTGCTCATCATACTCAGCGGCGAA
CCGAGCTCCATCGAGTGGTGCGGATGATGATGGTGCGGGTGGTGGTGGTG
CTGTTGCTGCTGCTGCAACTGCTGCAGCTGCTGTTGCTGATGCTGCTGGA
GCGGCTGGTGAGGCAACTGCTGGTCCGCCGATGAGGGTGGATAGAAGTTC
TGGCCGAGGTACGCCGCGGTGGGCGGTGGTGTCTTGCAGGCGGCTGTGTC
GGCCACGCTCCAGATCTTGGGCTTGCTCGCCGGAACTGGGATGCCACAGT
CTCTGCTCAGCGGGTTTTTTTGGGCCGCAAATTCACCCGATTCCTCCTGG
CCATAGCCACCCGGATGATAGTACGGCTGATCCATTTGATGGTGCTGCAG
CTGCTGCTGATTCTGCTGCTGCTGCTGCTGCTGTTG

BS08230.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10605-PA 2082 caup-RA 1213..2082 886..17 4325 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
caup-RA 4317 CG10605-RA 2351..3220 886..17 4335 99.9 Minus
ara-RB 2918 CG10571-RB 1751..1849 770..672 210 80.8 Minus
ara-RA 2942 CG10571-RA 1775..1873 770..672 210 80.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12619832..12620701 886..17 4335 99.9 Minus
3L 28110227 3L 12594851..12594949 770..672 210 80.8 Minus
Blast to na_te.dros performed on 2015-02-10 23:05:17 has no hits.

BS08230.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:11 Download gff for BS08230.3prime
Subject Subject Range Query Range Percent Splice Strand
caup-PA 1213..2082 17..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:21 Download gff for BS08230.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10605-PA 1213..2082 17..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:02:43 Download gff for BS08230.3prime
Subject Subject Range Query Range Percent Splice Strand
caup-RA 2351..3220 17..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:28 Download gff for BS08230.3prime
Subject Subject Range Query Range Percent Splice Strand
caup-RA 2351..3220 17..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:28 Download gff for BS08230.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12619832..12620701 17..886 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:02:43 Download gff for BS08230.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12612932..12613801 17..886 99   Minus

BS08230.5prime Sequence

874 bp (826 high quality bases) assembled on 2006-01-10

> BS08230.5prime
GAAGTTATCAGTCGACATGGCTGCATATGCGCAGTTTGGATACGCTGGCT
ACCCGACGGCAAATCAGCTGACTACCGCCAATACCGATAGCCAGAGCGGC
CATGGCGGAGGATCGCCGCTATCCGGCACGAATGAGGCTTCGCTGAGTCC
CTCGGGCGGCTCGACGGCCACCGGCCTGACTGCCGGTCCTCTGAGTCCAG
GTGCTGTTTCCCAGTCGTCGCATCATGCGGGCCACAAGGGTCTCTCCACA
TCGCCGGCGGAGGATGTGGTTGGTGGCGATGTGCCCGTTGGCCTTTCATC
TGCTGCCCAGGACTTGCCCAGCCGGGGATCCTGTTGCGAGAACGGCAGAC
CCATCATCACGGATCCCGTATCGGGACAAACCGTGTGCTCCTGCCAGTAC
GATCCGGCCCGACTGGCCATCGGTGGCTATTCCCGCATGGCCCTGCCCTC
CGGCGGCGTGGGAGTTGGCGTCTACGGCGGACCGTATCCCTCTAACGAAC
AGAACCCTTACCCCAGCATCGGAGTGGACAACTCGGCCTTCTACGCACCT
CTGAGCAATCCCTACGGCATCAAGGACACCAGTCCCAGCACCGAGATGAG
CGCCTGGACATCCGCCAGCCTGCAGTCAACCACCGGATACTATTCCTACG
ATCCCACGCTGGCGGCCTACGGATACGGACCCAACTATGATCTCGCCGCC
AGGCGGAAGAACGCCACGCGGGAATCCACGGCCACGTTGAAGGCCTGGCT
GAGTGAGCACAAGAAGAATCCATATCCGACGAAGGGTGAGAAGATTATGC
TGGCCATCATCACCAAGATGACCCTCACCCAGGTGTCCACGTGGTTTGCC
AATGCACGTCGTCGGCTGAAAAAG

BS08230.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10605-PA 2082 caup-RA 1..858 17..874 4290 100 Plus
CG10571-PA 2154 ara-RA 784..932 713..861 495 93.2 Plus
CG10601-PA 1926 mirr-RA 710..830 732..852 230 87.6 Plus
CG10601-PB 1926 mirr-RB 710..830 732..852 230 87.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
caup-RA 4317 CG10605-RA 1139..1996 17..874 4290 100 Plus
ara-RB 2918 CG10571-RB 819..1352 326..874 835 77.9 Plus
ara-RA 2942 CG10571-RA 1215..1376 713..874 615 92 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12616800..12617288 65..553 2445 100 Plus
3L 28110227 3L 12618341..12618543 672..874 1015 100 Plus
3L 28110227 3L 12594229..12594390 713..874 615 92 Plus
3L 28110227 3L 12617590..12617709 553..672 600 100 Plus
3L 28110227 3L 12707397..12707551 698..852 430 85.2 Plus
3L 28110227 3L 12610769..12610819 17..67 255 100 Plus
Blast to na_te.dros performed on 2015-02-10 02:59:45 has no hits.

BS08230.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:12 Download gff for BS08230.5prime
Subject Subject Range Query Range Percent Splice Strand
caup-PA 1..858 17..874 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:23 Download gff for BS08230.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10605-PA 1..858 17..874 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:39 Download gff for BS08230.5prime
Subject Subject Range Query Range Percent Splice Strand
caup-RA 1134..1996 10..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:12:36 Download gff for BS08230.5prime
Subject Subject Range Query Range Percent Splice Strand
caup-RA 1134..1996 10..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:12:36 Download gff for BS08230.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12610764..12610819 10..67 94 -> Plus
3L 12616803..12617288 68..553 100 -> Plus
3L 12617591..12617709 554..672 100 -> Plus
3L 12618342..12618543 673..874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:39 Download gff for BS08230.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12603864..12603919 10..67 94 -> Plus
arm_3L 12609903..12610388 68..553 100 -> Plus
arm_3L 12610691..12610809 554..672 100 -> Plus
arm_3L 12611442..12611643 673..874 100   Plus

BS08230.complete Sequence

2114 bp assembled on 2008-08-15

GenBank Submission: KX805272

> BS08230.complete
GAAGTTATCAGTCGACATGGCTGCATATGCGCAGTTTGGATACGCTGGCT
ACCCGACGGCAAATCAGCTGACTACCGCCAATACCGATAGCCAGAGCGGC
CATGGCGGAGGATCGCCGCTATCCGGCACGAATGAGGCTTCGCTGAGTCC
CTCGGGCGGCTCGACGGCCACCGGCCTGACTGCCGGTCCTCTGAGTCCAG
GTGCTGTTTCCCAGTCGTCGCATCATGCGGGCCACAAGGGTCTCTCCACA
TCGCCGGCGGAGGATGTGGTTGGTGGCGATGTGCCCGTTGGCCTTTCATC
TGCTGCCCAGGACTTGCCCAGCCGGGGATCCTGTTGCGAGAACGGCAGAC
CCATCATCACGGATCCCGTATCGGGACAAACCGTGTGCTCCTGCCAGTAC
GATCCGGCCCGACTGGCCATCGGTGGCTATTCCCGCATGGCCCTGCCCTC
CGGCGGCGTGGGAGTTGGCGTCTACGGCGGACCGTATCCCTCTAACGAAC
AGAACCCTTACCCCAGCATCGGAGTGGACAACTCGGCCTTCTACGCACCT
CTGAGCAATCCCTACGGCATCAAGGACACCAGTCCCAGCACCGAGATGAG
CGCCTGGACATCCGCCAGCCTGCAGTCAACCACCGGATACTATTCCTACG
ATCCCACGCTGGCGGCCTACGGATACGGACCCAACTATGATCTCGCCGCC
AGGCGGAAGAACGCCACGCGGGAATCCACGGCCACGTTGAAGGCCTGGCT
GAGTGAGCACAAGAAGAATCCATATCCGACGAAGGGTGAGAAGATTATGC
TGGCCATCATCACCAAGATGACCCTCACCCAGGTGTCCACGTGGTTTGCC
AATGCACGTCGTCGGCTGAAAAAGGAGAACAAGATGACGTGGGAGCCGAA
GAATAAGACGGAGGACGATGATGATGGCATGATGTCCGACGATGAGAAGG
AAAAGGATGCTGGCGATGGTGGGAAACTCTCTACAGAAGCTTTCGATCCC
GGCAATCAACTTATCAAATCCGAACTGGGCAAGGCGGAGAAGGAGGTGGA
CAGTAGTGGTGACCAGAAACTGGATCTGGACCGGGAGCCACACAATCTGG
TGGCCATGCGTGGACTGGCGCCATATGCCACGCCCCCAGGCGCCCATCCA
ATGCACGCGGCATACAGTTCGTATGCGCAATCCCACAACACGCATACGCA
CCCTCATCCCCAGCAAATGCAACACCACCAACAGCAGCAGCAGCAGCAGC
AGAATCAGCAGCAGCTGCAGCACCATCAAATGGATCAGCCGTACTATCAT
CCGGGTGGCTATGGCCAGGAGGAATCGGGTGAATTTGCGGCCCAAAAAAA
CCCGCTGAGCAGAGACTGTGGCATCCCAGTTCCGGCGAGCAAGCCCAAGA
TCTGGAGCGTGGCCGACACAGCCGCCTGCAAGACACCACCGCCCACCGCG
GCGTACCTCGGCCAGAACTTCTATCCACCCTCATCGGCGGACCAGCAGTT
GCCTCACCAGCCGCTCCAGCAGCATCAGCAACAGCAGCTGCAGCAGTTGC
AGCAGCAGCAACAGCACCACCACCACCCGCACCATCATCATCCGCACCAC
TCGATGGAGCTCGGTTCGCCGCTGAGTATGATGAGCAGCTACGCCGGCGG
ATCGCCATATTCGCGGATACCTACGGCGTACACCGAAGCCATGGGCATGC
ATCTGCCCAGCAGCAGCAGTTCCAGTTCCTCCACCGGCAAGCTGCCACCC
ACTCATATCCATCCGGCGCCACAGCGGGTGGGGTTTCCCGAGATCCAGCC
CGATACTCCGCCCCAGACACCACCCACTATGAAGCTGAACAGCAGCGGCG
GCAGCAGCAGCAGCAGCGGGAGCAGCCACAGTTCCTCGATGCATTCCGTC
ACTCCGGTGACGGTGGCTTCCATGGTCAACATTTTGTACAGTAATACGGA
CAGTGGATATGGACACGGACACAGTCATGGACATGGGCATGGCCACGGAC
ATGGACTCGGGCATGGACATGGACTCGGGCATGGGCATGGGCACATGGGC
GTCACTAGTAATGCCTATCTAACTGAGGGCGGGCGTTCCGGGTCGTAAAA
GCTTTCTAGACCAT

BS08230.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
caup-RA 2082 CG10605-PA 1..2082 17..2098 10395 100 Plus
ara-RB 2130 CG10571-PB 514..1004 464..957 1025 81 Plus
ara-RA 2154 CG10571-PA 784..1028 713..957 850 89.8 Plus
ara-RB 2130 CG10571-PB 1320..1418 1345..1443 210 80.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
caup-RA 4317 CG10605-RA 1139..3220 17..2098 10395 100 Plus
ara-RB 2918 CG10571-RB 945..1435 464..957 1025 81 Plus
ara-RA 2942 CG10571-RA 1215..1459 713..957 850 89.8 Plus
ara-RB 2918 CG10571-RB 1751..1849 1345..1443 210 80.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12619594..12620701 991..2098 5510 99.8 Plus
3L 28110227 3L 12616800..12617288 65..553 2445 100 Plus
3L 28110227 3L 12618341..12618664 672..995 1620 100 Plus
3L 28110227 3L 12594229..12594473 713..957 850 89.8 Plus
3L 28110227 3L 12617590..12617709 553..672 600 100 Plus
3L 28110227 3L 12707397..12707603 698..904 525 83.6 Plus
3L 28110227 3L 12610769..12610819 17..67 255 100 Plus
3L 28110227 3L 12594851..12594949 1345..1443 210 80.8 Plus
X 23542271 X 8042589..8042649 1279..1219 200 88.5 Minus
Blast to na_te.dros performed on 2014-11-26 16:31:05 has no hits.

BS08230.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:22:18 Download gff for BS08230.complete
Subject Subject Range Query Range Percent Splice Strand
caup-RA 639..2725 10..2098 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:55 Download gff for BS08230.complete
Subject Subject Range Query Range Percent Splice Strand
caup-RA 1139..3218 17..2096 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:29 Download gff for BS08230.complete
Subject Subject Range Query Range Percent Splice Strand
caup-RA 644..2723 17..2096 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:02 Download gff for BS08230.complete
Subject Subject Range Query Range Percent Splice Strand
caup-RA 1139..3218 17..2096 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:02 Download gff for BS08230.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12610769..12610819 17..67 100 -> Plus
3L 12616803..12617288 68..553 100 -> Plus
3L 12617591..12617709 554..672 100 -> Plus
3L 12618342..12618664 673..995 100 -> Plus
3L 12619599..12620699 996..2096 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:55 Download gff for BS08230.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12603869..12603919 17..67 100 -> Plus
arm_3L 12610691..12610809 554..672 100 -> Plus
arm_3L 12609903..12610388 68..553 100 -> Plus
arm_3L 12611442..12611764 673..995 100 -> Plus
arm_3L 12612699..12613799 996..2096 99   Plus

BS08230.pep Sequence

Translation from 16 to 2097

> BS08230.pep
MAAYAQFGYAGYPTANQLTTANTDSQSGHGGGSPLSGTNEASLSPSGGST
ATGLTAGPLSPGAVSQSSHHAGHKGLSTSPAEDVVGGDVPVGLSSAAQDL
PSRGSCCENGRPIITDPVSGQTVCSCQYDPARLAIGGYSRMALPSGGVGV
GVYGGPYPSNEQNPYPSIGVDNSAFYAPLSNPYGIKDTSPSTEMSAWTSA
SLQSTTGYYSYDPTLAAYGYGPNYDLAARRKNATRESTATLKAWLSEHKK
NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKNKTED
DDDGMMSDDEKEKDAGDGGKLSTEAFDPGNQLIKSELGKAEKEVDSSGDQ
KLDLDREPHNLVAMRGLAPYATPPGAHPMHAAYSSYAQSHNTHTHPHPQQ
MQHHQQQQQQQQNQQQLQHHQMDQPYYHPGGYGQEESGEFAAQKNPLSRD
CGIPVPASKPKIWSVADTAACKTPPPTAAYLGQNFYPPSSADQQLPHQPL
QQHQQQQLQQLQQQQQHHHHPHHHHPHHSMELGSPLSMMSSYAGGSPYSR
IPTAYTEAMGMHLPSSSSSSSSTGKLPPTHIHPAPQRVGFPEIQPDTPPQ
TPPTMKLNSSGGSSSSSGSSHSSSMHSVTPVTVASMVNILYSNTDSGYGH
GHSHGHGHGHGHGLGHGHGLGHGHGHMGVTSNAYLTEGGRSGS*

BS08230.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
caup-PA 693 CG10605-PA 1..693 1..693 3759 100 Plus
ara-PB 709 CG10571-PB 1..630 1..609 1301 46.4 Plus
ara-PA 717 CG10571-PA 1..638 1..609 1282 45.8 Plus
mirr-PB 641 CG10601-PB 31..638 38..635 642 33.8 Plus
mirr-PA 641 CG10601-PA 31..638 38..635 642 33.8 Plus