Clone Sequence Records
BS08230.3prime Sequence
886 bp (797 high quality bases) assembled on 2006-01-10
> BS08230.3prime
ATGGTCTAGAAAGCTTTTACGACCCGGAACGCCCGCCCTCAGTTAGATAG
GCATTACTAGTGACGCCCATGTGCCCATGCCCATGCCCGAGTCCATGTCC
ATGCCCGAGTCCATGTCCGTGGCCATGCCCATGTCCATGACTGTGTCCGT
GTCCATATCCACTGTCCGTATTACTGTACAAAATGTTGACCATGGAAGCC
ACCGTCACCGGAGTGACGGAATGCATCGAGGAACTGTGGCTGCTCCCGCT
GCTGCTGCTGCTGCCGCCGCTGCTGTTCAGCTTCATAGTGGGTGGTGTCT
GGGGCGGAGTATCGGGCTGGATCTCGGGAAACCCCACCCGCTGTGGCGCC
GGATGGATATGAGTGGGTGGCAGCTTGCCGGTGGAGGAACTGGAACTGCT
GCTGCTGGGCAGATGCATGCCCATGGCTTCGGTGTACGCCGTAGGTATCC
GCGAATATGGCGATCCGCCGGCGTAGCTGCTCATCATACTCAGCGGCGAA
CCGAGCTCCATCGAGTGGTGCGGATGATGATGGTGCGGGTGGTGGTGGTG
CTGTTGCTGCTGCTGCAACTGCTGCAGCTGCTGTTGCTGATGCTGCTGGA
GCGGCTGGTGAGGCAACTGCTGGTCCGCCGATGAGGGTGGATAGAAGTTC
TGGCCGAGGTACGCCGCGGTGGGCGGTGGTGTCTTGCAGGCGGCTGTGTC
GGCCACGCTCCAGATCTTGGGCTTGCTCGCCGGAACTGGGATGCCACAGT
CTCTGCTCAGCGGGTTTTTTTGGGCCGCAAATTCACCCGATTCCTCCTGG
CCATAGCCACCCGGATGATAGTACGGCTGATCCATTTGATGGTGCTGCAG
CTGCTGCTGATTCTGCTGCTGCTGCTGCTGCTGTTG
BS08230.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10605-PA | 2082 | caup-RA | 1213..2082 | 886..17 | 4325 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:05:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
caup-RA | 4317 | CG10605-RA | 2351..3220 | 886..17 | 4335 | 99.9 | Minus |
ara-RB | 2918 | CG10571-RB | 1751..1849 | 770..672 | 210 | 80.8 | Minus |
ara-RA | 2942 | CG10571-RA | 1775..1873 | 770..672 | 210 | 80.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:05:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12619832..12620701 | 886..17 | 4335 | 99.9 | Minus |
3L | 28110227 | 3L | 12594851..12594949 | 770..672 | 210 | 80.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:05:17 has no hits.
BS08230.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:11 Download gff for
BS08230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caup-PA | 1213..2082 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:21 Download gff for
BS08230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10605-PA | 1213..2082 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:02:43 Download gff for
BS08230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caup-RA | 2351..3220 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:28 Download gff for
BS08230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caup-RA | 2351..3220 | 17..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:28 Download gff for
BS08230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12619832..12620701 | 17..886 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:02:43 Download gff for
BS08230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12612932..12613801 | 17..886 | 99 | | Minus |
BS08230.5prime Sequence
874 bp (826 high quality bases) assembled on 2006-01-10
> BS08230.5prime
GAAGTTATCAGTCGACATGGCTGCATATGCGCAGTTTGGATACGCTGGCT
ACCCGACGGCAAATCAGCTGACTACCGCCAATACCGATAGCCAGAGCGGC
CATGGCGGAGGATCGCCGCTATCCGGCACGAATGAGGCTTCGCTGAGTCC
CTCGGGCGGCTCGACGGCCACCGGCCTGACTGCCGGTCCTCTGAGTCCAG
GTGCTGTTTCCCAGTCGTCGCATCATGCGGGCCACAAGGGTCTCTCCACA
TCGCCGGCGGAGGATGTGGTTGGTGGCGATGTGCCCGTTGGCCTTTCATC
TGCTGCCCAGGACTTGCCCAGCCGGGGATCCTGTTGCGAGAACGGCAGAC
CCATCATCACGGATCCCGTATCGGGACAAACCGTGTGCTCCTGCCAGTAC
GATCCGGCCCGACTGGCCATCGGTGGCTATTCCCGCATGGCCCTGCCCTC
CGGCGGCGTGGGAGTTGGCGTCTACGGCGGACCGTATCCCTCTAACGAAC
AGAACCCTTACCCCAGCATCGGAGTGGACAACTCGGCCTTCTACGCACCT
CTGAGCAATCCCTACGGCATCAAGGACACCAGTCCCAGCACCGAGATGAG
CGCCTGGACATCCGCCAGCCTGCAGTCAACCACCGGATACTATTCCTACG
ATCCCACGCTGGCGGCCTACGGATACGGACCCAACTATGATCTCGCCGCC
AGGCGGAAGAACGCCACGCGGGAATCCACGGCCACGTTGAAGGCCTGGCT
GAGTGAGCACAAGAAGAATCCATATCCGACGAAGGGTGAGAAGATTATGC
TGGCCATCATCACCAAGATGACCCTCACCCAGGTGTCCACGTGGTTTGCC
AATGCACGTCGTCGGCTGAAAAAG
BS08230.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10605-PA | 2082 | caup-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
CG10571-PA | 2154 | ara-RA | 784..932 | 713..861 | 495 | 93.2 | Plus |
CG10601-PA | 1926 | mirr-RA | 710..830 | 732..852 | 230 | 87.6 | Plus |
CG10601-PB | 1926 | mirr-RB | 710..830 | 732..852 | 230 | 87.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:59:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
caup-RA | 4317 | CG10605-RA | 1139..1996 | 17..874 | 4290 | 100 | Plus |
ara-RB | 2918 | CG10571-RB | 819..1352 | 326..874 | 835 | 77.9 | Plus |
ara-RA | 2942 | CG10571-RA | 1215..1376 | 713..874 | 615 | 92 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:59:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12616800..12617288 | 65..553 | 2445 | 100 | Plus |
3L | 28110227 | 3L | 12618341..12618543 | 672..874 | 1015 | 100 | Plus |
3L | 28110227 | 3L | 12594229..12594390 | 713..874 | 615 | 92 | Plus |
3L | 28110227 | 3L | 12617590..12617709 | 553..672 | 600 | 100 | Plus |
3L | 28110227 | 3L | 12707397..12707551 | 698..852 | 430 | 85.2 | Plus |
3L | 28110227 | 3L | 12610769..12610819 | 17..67 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:59:45 has no hits.
BS08230.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:12 Download gff for
BS08230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caup-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:23 Download gff for
BS08230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10605-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:39 Download gff for
BS08230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caup-RA | 1134..1996 | 10..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:12:36 Download gff for
BS08230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caup-RA | 1134..1996 | 10..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:12:36 Download gff for
BS08230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12610764..12610819 | 10..67 | 94 | -> | Plus |
3L | 12616803..12617288 | 68..553 | 100 | -> | Plus |
3L | 12617591..12617709 | 554..672 | 100 | -> | Plus |
3L | 12618342..12618543 | 673..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:39 Download gff for
BS08230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12603864..12603919 | 10..67 | 94 | -> | Plus |
arm_3L | 12609903..12610388 | 68..553 | 100 | -> | Plus |
arm_3L | 12610691..12610809 | 554..672 | 100 | -> | Plus |
arm_3L | 12611442..12611643 | 673..874 | 100 | | Plus |
BS08230.complete Sequence
2114 bp assembled on 2008-08-15
GenBank Submission: KX805272
> BS08230.complete
GAAGTTATCAGTCGACATGGCTGCATATGCGCAGTTTGGATACGCTGGCT
ACCCGACGGCAAATCAGCTGACTACCGCCAATACCGATAGCCAGAGCGGC
CATGGCGGAGGATCGCCGCTATCCGGCACGAATGAGGCTTCGCTGAGTCC
CTCGGGCGGCTCGACGGCCACCGGCCTGACTGCCGGTCCTCTGAGTCCAG
GTGCTGTTTCCCAGTCGTCGCATCATGCGGGCCACAAGGGTCTCTCCACA
TCGCCGGCGGAGGATGTGGTTGGTGGCGATGTGCCCGTTGGCCTTTCATC
TGCTGCCCAGGACTTGCCCAGCCGGGGATCCTGTTGCGAGAACGGCAGAC
CCATCATCACGGATCCCGTATCGGGACAAACCGTGTGCTCCTGCCAGTAC
GATCCGGCCCGACTGGCCATCGGTGGCTATTCCCGCATGGCCCTGCCCTC
CGGCGGCGTGGGAGTTGGCGTCTACGGCGGACCGTATCCCTCTAACGAAC
AGAACCCTTACCCCAGCATCGGAGTGGACAACTCGGCCTTCTACGCACCT
CTGAGCAATCCCTACGGCATCAAGGACACCAGTCCCAGCACCGAGATGAG
CGCCTGGACATCCGCCAGCCTGCAGTCAACCACCGGATACTATTCCTACG
ATCCCACGCTGGCGGCCTACGGATACGGACCCAACTATGATCTCGCCGCC
AGGCGGAAGAACGCCACGCGGGAATCCACGGCCACGTTGAAGGCCTGGCT
GAGTGAGCACAAGAAGAATCCATATCCGACGAAGGGTGAGAAGATTATGC
TGGCCATCATCACCAAGATGACCCTCACCCAGGTGTCCACGTGGTTTGCC
AATGCACGTCGTCGGCTGAAAAAGGAGAACAAGATGACGTGGGAGCCGAA
GAATAAGACGGAGGACGATGATGATGGCATGATGTCCGACGATGAGAAGG
AAAAGGATGCTGGCGATGGTGGGAAACTCTCTACAGAAGCTTTCGATCCC
GGCAATCAACTTATCAAATCCGAACTGGGCAAGGCGGAGAAGGAGGTGGA
CAGTAGTGGTGACCAGAAACTGGATCTGGACCGGGAGCCACACAATCTGG
TGGCCATGCGTGGACTGGCGCCATATGCCACGCCCCCAGGCGCCCATCCA
ATGCACGCGGCATACAGTTCGTATGCGCAATCCCACAACACGCATACGCA
CCCTCATCCCCAGCAAATGCAACACCACCAACAGCAGCAGCAGCAGCAGC
AGAATCAGCAGCAGCTGCAGCACCATCAAATGGATCAGCCGTACTATCAT
CCGGGTGGCTATGGCCAGGAGGAATCGGGTGAATTTGCGGCCCAAAAAAA
CCCGCTGAGCAGAGACTGTGGCATCCCAGTTCCGGCGAGCAAGCCCAAGA
TCTGGAGCGTGGCCGACACAGCCGCCTGCAAGACACCACCGCCCACCGCG
GCGTACCTCGGCCAGAACTTCTATCCACCCTCATCGGCGGACCAGCAGTT
GCCTCACCAGCCGCTCCAGCAGCATCAGCAACAGCAGCTGCAGCAGTTGC
AGCAGCAGCAACAGCACCACCACCACCCGCACCATCATCATCCGCACCAC
TCGATGGAGCTCGGTTCGCCGCTGAGTATGATGAGCAGCTACGCCGGCGG
ATCGCCATATTCGCGGATACCTACGGCGTACACCGAAGCCATGGGCATGC
ATCTGCCCAGCAGCAGCAGTTCCAGTTCCTCCACCGGCAAGCTGCCACCC
ACTCATATCCATCCGGCGCCACAGCGGGTGGGGTTTCCCGAGATCCAGCC
CGATACTCCGCCCCAGACACCACCCACTATGAAGCTGAACAGCAGCGGCG
GCAGCAGCAGCAGCAGCGGGAGCAGCCACAGTTCCTCGATGCATTCCGTC
ACTCCGGTGACGGTGGCTTCCATGGTCAACATTTTGTACAGTAATACGGA
CAGTGGATATGGACACGGACACAGTCATGGACATGGGCATGGCCACGGAC
ATGGACTCGGGCATGGACATGGACTCGGGCATGGGCATGGGCACATGGGC
GTCACTAGTAATGCCTATCTAACTGAGGGCGGGCGTTCCGGGTCGTAAAA
GCTTTCTAGACCAT
BS08230.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
caup-RA | 2082 | CG10605-PA | 1..2082 | 17..2098 | 10395 | 100 | Plus |
ara-RB | 2130 | CG10571-PB | 514..1004 | 464..957 | 1025 | 81 | Plus |
ara-RA | 2154 | CG10571-PA | 784..1028 | 713..957 | 850 | 89.8 | Plus |
ara-RB | 2130 | CG10571-PB | 1320..1418 | 1345..1443 | 210 | 80.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
caup-RA | 4317 | CG10605-RA | 1139..3220 | 17..2098 | 10395 | 100 | Plus |
ara-RB | 2918 | CG10571-RB | 945..1435 | 464..957 | 1025 | 81 | Plus |
ara-RA | 2942 | CG10571-RA | 1215..1459 | 713..957 | 850 | 89.8 | Plus |
ara-RB | 2918 | CG10571-RB | 1751..1849 | 1345..1443 | 210 | 80.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:31:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12619594..12620701 | 991..2098 | 5510 | 99.8 | Plus |
3L | 28110227 | 3L | 12616800..12617288 | 65..553 | 2445 | 100 | Plus |
3L | 28110227 | 3L | 12618341..12618664 | 672..995 | 1620 | 100 | Plus |
3L | 28110227 | 3L | 12594229..12594473 | 713..957 | 850 | 89.8 | Plus |
3L | 28110227 | 3L | 12617590..12617709 | 553..672 | 600 | 100 | Plus |
3L | 28110227 | 3L | 12707397..12707603 | 698..904 | 525 | 83.6 | Plus |
3L | 28110227 | 3L | 12610769..12610819 | 17..67 | 255 | 100 | Plus |
3L | 28110227 | 3L | 12594851..12594949 | 1345..1443 | 210 | 80.8 | Plus |
X | 23542271 | X | 8042589..8042649 | 1279..1219 | 200 | 88.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:31:05 has no hits.
BS08230.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:22:18 Download gff for
BS08230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caup-RA | 639..2725 | 10..2098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:55 Download gff for
BS08230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caup-RA | 1139..3218 | 17..2096 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:29 Download gff for
BS08230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caup-RA | 644..2723 | 17..2096 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:02 Download gff for
BS08230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
caup-RA | 1139..3218 | 17..2096 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:02 Download gff for
BS08230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12610769..12610819 | 17..67 | 100 | -> | Plus |
3L | 12616803..12617288 | 68..553 | 100 | -> | Plus |
3L | 12617591..12617709 | 554..672 | 100 | -> | Plus |
3L | 12618342..12618664 | 673..995 | 100 | -> | Plus |
3L | 12619599..12620699 | 996..2096 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:55 Download gff for
BS08230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12603869..12603919 | 17..67 | 100 | -> | Plus |
arm_3L | 12610691..12610809 | 554..672 | 100 | -> | Plus |
arm_3L | 12609903..12610388 | 68..553 | 100 | -> | Plus |
arm_3L | 12611442..12611764 | 673..995 | 100 | -> | Plus |
arm_3L | 12612699..12613799 | 996..2096 | 99 | | Plus |
BS08230.pep Sequence
Translation from 16 to 2097
> BS08230.pep
MAAYAQFGYAGYPTANQLTTANTDSQSGHGGGSPLSGTNEASLSPSGGST
ATGLTAGPLSPGAVSQSSHHAGHKGLSTSPAEDVVGGDVPVGLSSAAQDL
PSRGSCCENGRPIITDPVSGQTVCSCQYDPARLAIGGYSRMALPSGGVGV
GVYGGPYPSNEQNPYPSIGVDNSAFYAPLSNPYGIKDTSPSTEMSAWTSA
SLQSTTGYYSYDPTLAAYGYGPNYDLAARRKNATRESTATLKAWLSEHKK
NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKNKTED
DDDGMMSDDEKEKDAGDGGKLSTEAFDPGNQLIKSELGKAEKEVDSSGDQ
KLDLDREPHNLVAMRGLAPYATPPGAHPMHAAYSSYAQSHNTHTHPHPQQ
MQHHQQQQQQQQNQQQLQHHQMDQPYYHPGGYGQEESGEFAAQKNPLSRD
CGIPVPASKPKIWSVADTAACKTPPPTAAYLGQNFYPPSSADQQLPHQPL
QQHQQQQLQQLQQQQQHHHHPHHHHPHHSMELGSPLSMMSSYAGGSPYSR
IPTAYTEAMGMHLPSSSSSSSSTGKLPPTHIHPAPQRVGFPEIQPDTPPQ
TPPTMKLNSSGGSSSSSGSSHSSSMHSVTPVTVASMVNILYSNTDSGYGH
GHSHGHGHGHGHGLGHGHGLGHGHGHMGVTSNAYLTEGGRSGS*
BS08230.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
caup-PA | 693 | CG10605-PA | 1..693 | 1..693 | 3759 | 100 | Plus |
ara-PB | 709 | CG10571-PB | 1..630 | 1..609 | 1301 | 46.4 | Plus |
ara-PA | 717 | CG10571-PA | 1..638 | 1..609 | 1282 | 45.8 | Plus |
mirr-PB | 641 | CG10601-PB | 31..638 | 38..635 | 642 | 33.8 | Plus |
mirr-PA | 641 | CG10601-PA | 31..638 | 38..635 | 642 | 33.8 | Plus |