Clone BS08231 Report

Search the DGRC for BS08231

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:82
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptE(spl)m5-HLH-RA
Protein status:BS08231.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08231.3prime Sequence

569 bp (568 high quality bases) assembled on 2006-01-10

> BS08231.3prime
ATGGTCTAGAAAGCTTCGTTACCAAGGGCGCCACATGGTTTCTTCGACTG
GCTTGGGGCTGGCGGCGGATTGAGAGTCCTCGTTATCGCTGTGGTATCCC
GAGGAGGCGGGGCTGAGTGGGCGTGGGGTGGAGGTTGTAACAGAAGTCTG
GACCTGATCGGCCTGCAGCATGCGCTGGAACTCGACGCCCAGATGGGTCA
TCACTGTCTTGCCCACATCCACACTCATGGCTGGAGTGCAGGCCATCACA
CGGGAGATCTCGCTGACGGCGTTCATGTAGCCATTCTTGAAGCTATCCAT
GGGAAGTGGGGAGACCGGCGCCTGCTGCTTGACGACCTGTTTGCGCATGA
AGACGAGTGCCGCCTCCAGCATCTCGGCCTTGTCCATTCGCAGGATGGCA
TCATCGCCCTGGAACTCGGCCACCAAGGTCTTCAAGGTGTCCAAACACTT
GTTCATGCGGGCCCGACGCTGGCGCTCCAAAAGGGGCTTCTTCACCTTCA
AATAGTGCTGGGTCTTGGAGACGAATGTGGTGCTGTTGTTGCTCTGTGGT
GCCATGTCGACTGATAACT

BS08231.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6096-PA 537 HLHm5-RA 1..537 555..19 2685 100 Minus
CG8365-PA 540 E(spl)-RA 127..164 405..368 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m5-HLH-RA 882 CG6096-RA 84..620 555..19 2685 100 Minus
E(spl)m8-HLH-RA 769 CG8365-RA 98..434 518..188 455 76.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26029116..26029652 19..555 2685 100 Plus
3R 32079331 3R 26040337..26040673 518..188 385 75.7 Minus
Blast to na_te.dros performed on 2015-02-03 09:28:24 has no hits.

BS08231.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:13 Download gff for BS08231.3prime
Subject Subject Range Query Range Percent Splice Strand
HLHm5-PA 1..537 19..555 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:25 Download gff for BS08231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6096-PA 1..537 19..555 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:46:50 Download gff for BS08231.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m5-HLH-RA 75..620 19..563 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 10:00:48 Download gff for BS08231.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m5-HLH-RA 75..620 19..563 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 10:00:48 Download gff for BS08231.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26029116..26029661 19..563 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:46:50 Download gff for BS08231.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21854838..21855383 19..563 99   Plus

BS08231.5prime Sequence

569 bp (568 high quality bases) assembled on 2006-01-10

> BS08231.5prime
GAAGTTATCAGTCGACATGGCACCACAGAGCAACAACAGCACCACATTCG
TCTCCAAGACCCAGCACTATTTGAAGGTGAAGAAGCCCCTTTTGGAGCGC
CAGCGTCGGGCCCGCATGAACAAGTGTTTGGACACCTTGAAGACCTTGGT
GGCCGAGTTCCAGGGCGATGATGCCATCCTGCGAATGGACAAGGCCGAGA
TGCTGGAGGCGGCACTCGTCTTCATGCGCAAACAGGTCGTCAAGCAGCAG
GCGCCGGTCTCCCCACTTCCCATGGATAGCTTCAAGAATGGCTACATGAA
CGCCGTCAGCGAGATCTCCCGTGTGATGGCCTGCACTCCAGCCATGAGTG
TGGATGTGGGCAAGACAGTGATGACCCATCTGGGCGTCGAGTTCCAGCGC
ATGCTGCAGGCCGATCAGGTCCAGACTTCTGTTACAACCTCCACCCCACG
CCCACTCAGCCCCGCCTCCTCGGGATACCACAGCGATAACGAGGACTCTC
AATCCGCCGCCAGCCCCAAGCCAGTCGAAGAAACCATGTGGCGCCCTTGG
TAACGAAGCTTTCTAGACC

BS08231.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6096-PA 537 HLHm5-RA 1..537 17..553 2685 100 Plus
CG8365-PA 540 E(spl)-RA 127..164 167..204 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m5-HLH-RA 882 CG6096-RA 84..620 17..553 2685 100 Plus
E(spl)m8-HLH-RA 769 CG8365-RA 98..434 54..384 455 76.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26029116..26029652 553..17 2685 100 Minus
3R 32079331 3R 26040337..26040673 54..384 385 75.7 Plus
Blast to na_te.dros performed on 2015-02-12 05:31:56 has no hits.

BS08231.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:14 Download gff for BS08231.5prime
Subject Subject Range Query Range Percent Splice Strand
HLHm5-PA 1..537 17..553 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:26 Download gff for BS08231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6096-PA 1..537 17..553 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:57:24 Download gff for BS08231.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m5-HLH-RA 75..620 9..553 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:32 Download gff for BS08231.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m5-HLH-RA 75..620 9..553 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:32 Download gff for BS08231.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26029116..26029661 9..553 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:57:24 Download gff for BS08231.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21854838..21855383 9..553 99   Minus

BS08231.complete Sequence

571 bp (571 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636133

> BS08231.complete
GAAGTTATCAGTCGACATGGCACCACAGAGCAACAACAGCACCACATTCG
TCTCCAAGACCCAGCACTATTTGAAGGTGAAGAAGCCCCTTTTGGAGCGC
CAGCGTCGGGCCCGCATGAACAAGTGTTTGGACACCTTGAAGACCTTGGT
GGCCGAGTTCCAGGGCGATGATGCCATCCTGCGAATGGACAAGGCCGAGA
TGCTGGAGGCGGCACTCGTCTTCATGCGCAAACAGGTCGTCAAGCAGCAG
GCGCCGGTCTCCCCACTTCCCATGGATAGCTTCAAGAATGGCTACATGAA
CGCCGTCAGCGAGATCTCCCGTGTGATGGCCTGCACTCCAGCCATGAGTG
TGGATGTGGGCAAGACAGTGATGACCCATCTGGGCGTCGAGTTCCAGCGC
ATGCTGCAGGCCGATCAGGTCCAGACTTCTGTTACAACCTCCACCCCACG
CCCACTCAGCCCCGCCTCCTCGGGATACCACAGCGATAACGAGGACTCTC
AATCCGCCGCCAGCCCCAAGCCAGTCGAAGAAACCATGTGGCGCCCTTGG
TAACGAAGCTTTCTAGACCAT

BS08231.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m5-HLH-RA 537 CG6096-PA 1..537 17..553 2685 100 Plus
E(spl)m8-HLH-RA 540 CG8365-PA 14..350 54..384 385 75.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m5-HLH-RA 882 CG6096-RA 84..620 17..553 2685 100 Plus
E(spl)m8-HLH-RA 769 CG8365-RA 98..434 54..384 385 75.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26029116..26029652 553..17 2685 100 Minus
3R 32079331 3R 26040337..26040673 54..384 385 75.7 Plus
Blast to na_te.dros performed on 2014-11-26 15:51:03 has no hits.

BS08231.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:46 Download gff for BS08231.complete
Subject Subject Range Query Range Percent Splice Strand
HLHm5-RA 1..537 17..553 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:47 Download gff for BS08231.complete
Subject Subject Range Query Range Percent Splice Strand
HLHm5-RA 75..620 9..553 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:11 Download gff for BS08231.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)m5-HLH-RA 84..620 17..555 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:46 Download gff for BS08231.complete
Subject Subject Range Query Range Percent Splice Strand
HLHm5-RA 75..620 9..553 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:22 Download gff for BS08231.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)m5-HLH-RA 84..620 17..555 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:22 Download gff for BS08231.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26029114..26029652 17..555 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:11 Download gff for BS08231.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21854836..21855374 17..555 99   Minus

BS08231.pep Sequence

Translation from 16 to 552

> BS08231.pep
MAPQSNNSTTFVSKTQHYLKVKKPLLERQRRARMNKCLDTLKTLVAEFQG
DDAILRMDKAEMLEAALVFMRKQVVKQQAPVSPLPMDSFKNGYMNAVSEI
SRVMACTPAMSVDVGKTVMTHLGVEFQRMLQADQVQTSVTTSTPRPLSPA
SSGYHSDNEDSQSAASPKPVEETMWRPW*

BS08231.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m5-HLH-PA 178 CG6096-PA 1..178 1..178 911 100 Plus
E(spl)m8-HLH-PA 179 CG8365-PA 3..179 11..178 521 60.9 Plus
E(spl)m7-HLH-PA 186 CG8361-PA 7..186 12..178 304 39.8 Plus
E(spl)mgamma-HLH-PA 205 CG8333-PA 9..205 12..178 266 34.5 Plus
E(spl)mbeta-HLH-PA 195 CG14548-PA 7..195 12..178 256 34.2 Plus