Clone Sequence Records
BS08231.3prime Sequence
569 bp (568 high quality bases) assembled on 2006-01-10
> BS08231.3prime
ATGGTCTAGAAAGCTTCGTTACCAAGGGCGCCACATGGTTTCTTCGACTG
GCTTGGGGCTGGCGGCGGATTGAGAGTCCTCGTTATCGCTGTGGTATCCC
GAGGAGGCGGGGCTGAGTGGGCGTGGGGTGGAGGTTGTAACAGAAGTCTG
GACCTGATCGGCCTGCAGCATGCGCTGGAACTCGACGCCCAGATGGGTCA
TCACTGTCTTGCCCACATCCACACTCATGGCTGGAGTGCAGGCCATCACA
CGGGAGATCTCGCTGACGGCGTTCATGTAGCCATTCTTGAAGCTATCCAT
GGGAAGTGGGGAGACCGGCGCCTGCTGCTTGACGACCTGTTTGCGCATGA
AGACGAGTGCCGCCTCCAGCATCTCGGCCTTGTCCATTCGCAGGATGGCA
TCATCGCCCTGGAACTCGGCCACCAAGGTCTTCAAGGTGTCCAAACACTT
GTTCATGCGGGCCCGACGCTGGCGCTCCAAAAGGGGCTTCTTCACCTTCA
AATAGTGCTGGGTCTTGGAGACGAATGTGGTGCTGTTGTTGCTCTGTGGT
GCCATGTCGACTGATAACT
BS08231.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6096-PA | 537 | HLHm5-RA | 1..537 | 555..19 | 2685 | 100 | Minus |
CG8365-PA | 540 | E(spl)-RA | 127..164 | 405..368 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m5-HLH-RA | 882 | CG6096-RA | 84..620 | 555..19 | 2685 | 100 | Minus |
E(spl)m8-HLH-RA | 769 | CG8365-RA | 98..434 | 518..188 | 455 | 76.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:28:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26029116..26029652 | 19..555 | 2685 | 100 | Plus |
3R | 32079331 | 3R | 26040337..26040673 | 518..188 | 385 | 75.7 | Minus |
Blast to na_te.dros performed on 2015-02-03 09:28:24 has no hits.
BS08231.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:13 Download gff for
BS08231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm5-PA | 1..537 | 19..555 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:25 Download gff for
BS08231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6096-PA | 1..537 | 19..555 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:46:50 Download gff for
BS08231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m5-HLH-RA | 75..620 | 19..563 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 10:00:48 Download gff for
BS08231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m5-HLH-RA | 75..620 | 19..563 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 10:00:48 Download gff for
BS08231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26029116..26029661 | 19..563 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:46:50 Download gff for
BS08231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21854838..21855383 | 19..563 | 99 | | Plus |
BS08231.5prime Sequence
569 bp (568 high quality bases) assembled on 2006-01-10
> BS08231.5prime
GAAGTTATCAGTCGACATGGCACCACAGAGCAACAACAGCACCACATTCG
TCTCCAAGACCCAGCACTATTTGAAGGTGAAGAAGCCCCTTTTGGAGCGC
CAGCGTCGGGCCCGCATGAACAAGTGTTTGGACACCTTGAAGACCTTGGT
GGCCGAGTTCCAGGGCGATGATGCCATCCTGCGAATGGACAAGGCCGAGA
TGCTGGAGGCGGCACTCGTCTTCATGCGCAAACAGGTCGTCAAGCAGCAG
GCGCCGGTCTCCCCACTTCCCATGGATAGCTTCAAGAATGGCTACATGAA
CGCCGTCAGCGAGATCTCCCGTGTGATGGCCTGCACTCCAGCCATGAGTG
TGGATGTGGGCAAGACAGTGATGACCCATCTGGGCGTCGAGTTCCAGCGC
ATGCTGCAGGCCGATCAGGTCCAGACTTCTGTTACAACCTCCACCCCACG
CCCACTCAGCCCCGCCTCCTCGGGATACCACAGCGATAACGAGGACTCTC
AATCCGCCGCCAGCCCCAAGCCAGTCGAAGAAACCATGTGGCGCCCTTGG
TAACGAAGCTTTCTAGACC
BS08231.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6096-PA | 537 | HLHm5-RA | 1..537 | 17..553 | 2685 | 100 | Plus |
CG8365-PA | 540 | E(spl)-RA | 127..164 | 167..204 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:31:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m5-HLH-RA | 882 | CG6096-RA | 84..620 | 17..553 | 2685 | 100 | Plus |
E(spl)m8-HLH-RA | 769 | CG8365-RA | 98..434 | 54..384 | 455 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26029116..26029652 | 553..17 | 2685 | 100 | Minus |
3R | 32079331 | 3R | 26040337..26040673 | 54..384 | 385 | 75.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:31:56 has no hits.
BS08231.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:14 Download gff for
BS08231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm5-PA | 1..537 | 17..553 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:26 Download gff for
BS08231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6096-PA | 1..537 | 17..553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:57:24 Download gff for
BS08231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m5-HLH-RA | 75..620 | 9..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:32 Download gff for
BS08231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m5-HLH-RA | 75..620 | 9..553 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:32 Download gff for
BS08231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26029116..26029661 | 9..553 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:57:24 Download gff for
BS08231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21854838..21855383 | 9..553 | 99 | | Minus |
BS08231.complete Sequence
571 bp (571 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636133
> BS08231.complete
GAAGTTATCAGTCGACATGGCACCACAGAGCAACAACAGCACCACATTCG
TCTCCAAGACCCAGCACTATTTGAAGGTGAAGAAGCCCCTTTTGGAGCGC
CAGCGTCGGGCCCGCATGAACAAGTGTTTGGACACCTTGAAGACCTTGGT
GGCCGAGTTCCAGGGCGATGATGCCATCCTGCGAATGGACAAGGCCGAGA
TGCTGGAGGCGGCACTCGTCTTCATGCGCAAACAGGTCGTCAAGCAGCAG
GCGCCGGTCTCCCCACTTCCCATGGATAGCTTCAAGAATGGCTACATGAA
CGCCGTCAGCGAGATCTCCCGTGTGATGGCCTGCACTCCAGCCATGAGTG
TGGATGTGGGCAAGACAGTGATGACCCATCTGGGCGTCGAGTTCCAGCGC
ATGCTGCAGGCCGATCAGGTCCAGACTTCTGTTACAACCTCCACCCCACG
CCCACTCAGCCCCGCCTCCTCGGGATACCACAGCGATAACGAGGACTCTC
AATCCGCCGCCAGCCCCAAGCCAGTCGAAGAAACCATGTGGCGCCCTTGG
TAACGAAGCTTTCTAGACCAT
BS08231.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m5-HLH-RA | 537 | CG6096-PA | 1..537 | 17..553 | 2685 | 100 | Plus |
E(spl)m8-HLH-RA | 540 | CG8365-PA | 14..350 | 54..384 | 385 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m5-HLH-RA | 882 | CG6096-RA | 84..620 | 17..553 | 2685 | 100 | Plus |
E(spl)m8-HLH-RA | 769 | CG8365-RA | 98..434 | 54..384 | 385 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26029116..26029652 | 553..17 | 2685 | 100 | Minus |
3R | 32079331 | 3R | 26040337..26040673 | 54..384 | 385 | 75.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:51:03 has no hits.
BS08231.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:46 Download gff for
BS08231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm5-RA | 1..537 | 17..553 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:47 Download gff for
BS08231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm5-RA | 75..620 | 9..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:11 Download gff for
BS08231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m5-HLH-RA | 84..620 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:46 Download gff for
BS08231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm5-RA | 75..620 | 9..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:22 Download gff for
BS08231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m5-HLH-RA | 84..620 | 17..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:22 Download gff for
BS08231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26029114..26029652 | 17..555 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:11 Download gff for
BS08231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21854836..21855374 | 17..555 | 99 | | Minus |
BS08231.pep Sequence
Translation from 16 to 552
> BS08231.pep
MAPQSNNSTTFVSKTQHYLKVKKPLLERQRRARMNKCLDTLKTLVAEFQG
DDAILRMDKAEMLEAALVFMRKQVVKQQAPVSPLPMDSFKNGYMNAVSEI
SRVMACTPAMSVDVGKTVMTHLGVEFQRMLQADQVQTSVTTSTPRPLSPA
SSGYHSDNEDSQSAASPKPVEETMWRPW*
BS08231.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m5-HLH-PA | 178 | CG6096-PA | 1..178 | 1..178 | 911 | 100 | Plus |
E(spl)m8-HLH-PA | 179 | CG8365-PA | 3..179 | 11..178 | 521 | 60.9 | Plus |
E(spl)m7-HLH-PA | 186 | CG8361-PA | 7..186 | 12..178 | 304 | 39.8 | Plus |
E(spl)mgamma-HLH-PA | 205 | CG8333-PA | 9..205 | 12..178 | 266 | 34.5 | Plus |
E(spl)mbeta-HLH-PA | 195 | CG14548-PA | 7..195 | 12..178 | 256 | 34.2 | Plus |