Clone Sequence Records
BS08237.3prime Sequence
686 bp (685 high quality bases) assembled on 2006-01-10
> BS08237.3prime
ATGGTCTAGAAAGCTTCGTTATACTTCACAAATATAGGGCTTCTCGCCGG
TGTGGATGCGCATGTGGATGGTCAGCTTGTCCTTGCGGGCGAGTCCTTTG
CCGCAGACCGTGCACTCGAATGCCTTGTTGGTGGACTTTGAGGGATTTGT
CTTGCGCACCCCGGAGGATGCCTGTTGCACCTGTTGCAGGGCCTTGAGTC
GACTGGCGGGGTGCATGGAGCCCCCCTCGACATAGGGCTCTGTGAAGGGG
ATGAGGTTGGGCTTGGGGATGTTGTAGGTCAGTTGCTCGGCCGCCGACCA
GGTTCCCAGACTCTGCAGGACCCGCACGCCTCCTTCGAATCCCATTCCGT
CGTCCGGAACTGTGAAGGTGCTCTCCCCCGCCGCCGCGGCTGCCACATTG
GAGGAACTGATCTGCGGCACCTTGATGGTTGCTGCATAATGCTGCTGCTG
CTGTTGTTGCTGCTGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGTTGCT
GCTGCATGTTGCCATTGTTCTGGCTGTTGTTGTTGTTGTTGGCCGTGGGG
GAGTTCTGTTGCTGGGACGTCTGCTGCTGCTTGAACTGAATGGCCGCCTG
GGCCATCTGCTGCTGCACCGCCATGTGCGCCTCGAGATATGCGTTCTTCT
GGGCAACCGTCATCTTATCCATGTCGACTGATAACT
BS08237.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12071-PA | 654 | CG12071-RA | 1..654 | 672..19 | 3270 | 100 | Minus |
CG12071-PB | 1737 | CG12071-RB | 1..650 | 672..23 | 3250 | 100 | Minus |
CG6654-PA | 1920 | CG6654-RA | 1287..1313 | 67..41 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:17:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12071-RE | 2640 | CG12071-RE | 279..930 | 674..23 | 3260 | 100 | Minus |
CG12071-RD | 2155 | CG12071-RD | 279..930 | 674..23 | 3260 | 100 | Minus |
CG12071-RG | 2155 | CG12071-RG | 279..930 | 674..23 | 3260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:17:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30879354..30879893 | 135..674 | 2700 | 100 | Plus |
3R | 32079331 | 3R | 30879127..30879242 | 19..134 | 580 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 23:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2510 | 581..412 | 348 | 72.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2456..2649 | 616..428 | 172 | 59.2 | Minus |
BS08237.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:15 Download gff for
BS08237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-PA | 1..654 | 19..672 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:27 Download gff for
BS08237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-PA | 1..654 | 19..672 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:29:54 Download gff for
BS08237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-RB | 123..784 | 15..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:30:51 Download gff for
BS08237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-RG | 275..936 | 15..678 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:30:51 Download gff for
BS08237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30879122..30879242 | 13..134 | 97 | <- | Plus |
3R | 30879354..30879897 | 135..678 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:29:54 Download gff for
BS08237.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26704844..26704964 | 13..134 | 97 | <- | Plus |
arm_3R | 26705076..26705619 | 135..678 | 99 | | Plus |
BS08237.5prime Sequence
686 bp (685 high quality bases) assembled on 2006-01-10
> BS08237.5prime
GAAGTTATCAGTCGACATGGATAAGATGACGGTTGCCCAGAAGAACGCAT
ATCTCGAGGCGCACATGGCGGTGCAGCAGCAGATGGCCCAGGCGGCCATT
CAGTTCAAGCAGCAGCAGACGTCCCAGCAACAGAACTCCCCCACGGCCAA
CAACAACAACAACAGCCAGAACAATGGCAACATGCAGCAGCAACAGCAGC
AGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAT
TATGCAGCAACCATCAAGGTGCCGCAGATCAGTTCCTCCAATGTGGCAGC
CGCGGCGGCGGGGGAGAGCACCTTCACAGTTCCGGACGACGGAATGGGAT
TCGAAGGAGGCGTGCGGGTCCTGCAGAGTCTGGGAACCTGGTCGGCGGCC
GAGCAACTGACCTACAACATCCCCAAGCCCAACCTCATCCCCTTCACAGA
GCCCTATGTCGAGGGGGGCTCCATGCACCCCGCCAGTCGACTCAAGGCCC
TGCAACAGGTGCAACAGGCATCCTCCGGGGTGCGCAAGACAAATCCCTCA
AAGTCCACCAACAAGGCATTCGAGTGCACGGTCTGCGGCAAAGGACTCGC
CCGCAAGGACAAGCTGACCATCCACATGCGCATCCACACCGGCGAGAAGC
CCTATATTTGTGAAGTATAACGAAGCTTTCTAGACC
BS08237.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12071-PA | 654 | CG12071-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
CG12071-PB | 1737 | CG12071-RB | 1..650 | 17..666 | 3250 | 100 | Plus |
CG6654-PA | 1920 | CG6654-RA | 1287..1313 | 622..648 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12071-RE | 2640 | CG12071-RE | 279..930 | 15..666 | 3260 | 100 | Plus |
CG12071-RD | 2155 | CG12071-RD | 279..930 | 15..666 | 3260 | 100 | Plus |
CG12071-RG | 2155 | CG12071-RG | 279..930 | 15..666 | 3260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:28:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30879354..30879893 | 554..15 | 2700 | 100 | Minus |
3R | 32079331 | 3R | 30879127..30879242 | 670..555 | 580 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 05:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2510 | 108..277 | 348 | 72.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2456..2649 | 73..261 | 172 | 59.2 | Plus |
BS08237.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:16 Download gff for
BS08237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:28 Download gff for
BS08237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:56:55 Download gff for
BS08237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-RB | 123..784 | 11..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:28 Download gff for
BS08237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-RG | 275..936 | 11..674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:28 Download gff for
BS08237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30879122..30879242 | 555..676 | 97 | <- | Minus |
3R | 30879354..30879897 | 11..554 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:56:55 Download gff for
BS08237.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26704844..26704964 | 555..676 | 97 | <- | Minus |
arm_3R | 26705076..26705619 | 11..554 | 99 | | Minus |
BS08237.complete Sequence
688 bp (688 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636134
> BS08237.complete
GAAGTTATCAGTCGACATGGATAAGATGACGGTTGCCCAGAAGAACGCAT
ATCTCGAGGCGCACATGGCGGTGCAGCAGCAGATGGCCCAGGCGGCCATT
CAGTTCAAGCAGCAGCAGACGTCCCAGCAACAGAACTCCCCCACGGCCAA
CAACAACAACAACAGCCAGAACAATGGCAACATGCAGCAGCAACAGCAGC
AGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAT
TATGCAGCAACCATCAAGGTGCCGCAGATCAGTTCCTCCAATGTGGCAGC
CGCGGCGGCGGGGGAGAGCACCTTCACAGTTCCGGACGACGGAATGGGAT
TCGAAGGAGGCGTGCGGGTCCTGCAGAGTCTGGGAACCTGGTCGGCGGCC
GAGCAACTGACCTACAACATCCCCAAGCCCAACCTCATCCCCTTCACAGA
GCCCTATGTCGAGGGGGGCTCCATGCACCCCGCCAGTCGACTCAAGGCCC
TGCAACAGGTGCAACAGGCATCCTCCGGGGTGCGCAAGACAAATCCCTCA
AAGTCCACCAACAAGGCATTCGAGTGCACGGTCTGCGGCAAAGGACTCGC
CCGCAAGGACAAGCTGACCATCCACATGCGCATCCACACCGGCGAGAAGC
CCTATATTTGTGAAGTATAACGAAGCTTTCTAGACCAT
BS08237.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12071-RE | 1746 | CG12071-PE | 1..650 | 17..666 | 3250 | 100 | Plus |
CG12071-RD | 1746 | CG12071-PD | 1..650 | 17..666 | 3250 | 100 | Plus |
CG12071-RG | 1017 | CG12071-PG | 1..650 | 17..666 | 3250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12071-RE | 2640 | CG12071-RE | 279..930 | 15..666 | 3260 | 100 | Plus |
CG12071-RD | 2155 | CG12071-RD | 279..930 | 15..666 | 3260 | 100 | Plus |
CG12071-RG | 2155 | CG12071-RG | 279..930 | 15..666 | 3260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30879354..30879893 | 554..15 | 2700 | 100 | Minus |
3R | 32079331 | 3R | 30879127..30879242 | 670..555 | 580 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:49:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2510 | 108..277 | 348 | 72.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2456..2649 | 73..261 | 172 | 59.2 | Plus |
BS08237.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:47 Download gff for
BS08237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-RA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:24 Download gff for
BS08237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-RA | 123..787 | 11..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:48 Download gff for
BS08237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-RB | 129..781 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:47 Download gff for
BS08237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-RA | 123..787 | 11..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:42 Download gff for
BS08237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12071-RG | 281..933 | 17..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:42 Download gff for
BS08237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30879126..30879242 | 555..672 | 99 | <- | Minus |
3R | 30879354..30879891 | 17..554 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:48 Download gff for
BS08237.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26704848..26704964 | 555..672 | 99 | <- | Minus |
arm_3R | 26705076..26705613 | 17..554 | 100 | | Minus |
BS08237.pep Sequence
Translation from 16 to 669
> BS08237.pep
MDKMTVAQKNAYLEAHMAVQQQMAQAAIQFKQQQTSQQQNSPTANNNNNS
QNNGNMQQQQQQQQQQQQQQQQQQQQQHYAATIKVPQISSSNVAAAAAGE
STFTVPDDGMGFEGGVRVLQSLGTWSAAEQLTYNIPKPNLIPFTEPYVEG
GSMHPASRLKALQQVQQASSGVRKTNPSKSTNKAFECTVCGKGLARKDKL
TIHMRIHTGEKPYICEV*
BS08237.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12071-PG | 338 | CG12071-PG | 1..217 | 1..217 | 1119 | 100 | Plus |
CG12071-PF | 338 | CG12071-PF | 1..217 | 1..217 | 1119 | 100 | Plus |
CG12071-PE | 581 | CG12071-PE | 1..217 | 1..217 | 1119 | 100 | Plus |
CG12071-PD | 581 | CG12071-PD | 1..217 | 1..217 | 1119 | 100 | Plus |
Aef1-PB | 308 | CG5683-PB | 29..216 | 38..217 | 182 | 30.3 | Plus |