Clone BS08237 Report

Search the DGRC for BS08237

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:82
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG12071-RA
Protein status:BS08237.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08237.3prime Sequence

686 bp (685 high quality bases) assembled on 2006-01-10

> BS08237.3prime
ATGGTCTAGAAAGCTTCGTTATACTTCACAAATATAGGGCTTCTCGCCGG
TGTGGATGCGCATGTGGATGGTCAGCTTGTCCTTGCGGGCGAGTCCTTTG
CCGCAGACCGTGCACTCGAATGCCTTGTTGGTGGACTTTGAGGGATTTGT
CTTGCGCACCCCGGAGGATGCCTGTTGCACCTGTTGCAGGGCCTTGAGTC
GACTGGCGGGGTGCATGGAGCCCCCCTCGACATAGGGCTCTGTGAAGGGG
ATGAGGTTGGGCTTGGGGATGTTGTAGGTCAGTTGCTCGGCCGCCGACCA
GGTTCCCAGACTCTGCAGGACCCGCACGCCTCCTTCGAATCCCATTCCGT
CGTCCGGAACTGTGAAGGTGCTCTCCCCCGCCGCCGCGGCTGCCACATTG
GAGGAACTGATCTGCGGCACCTTGATGGTTGCTGCATAATGCTGCTGCTG
CTGTTGTTGCTGCTGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGTTGCT
GCTGCATGTTGCCATTGTTCTGGCTGTTGTTGTTGTTGTTGGCCGTGGGG
GAGTTCTGTTGCTGGGACGTCTGCTGCTGCTTGAACTGAATGGCCGCCTG
GGCCATCTGCTGCTGCACCGCCATGTGCGCCTCGAGATATGCGTTCTTCT
GGGCAACCGTCATCTTATCCATGTCGACTGATAACT

BS08237.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12071-PA 654 CG12071-RA 1..654 672..19 3270 100 Minus
CG12071-PB 1737 CG12071-RB 1..650 672..23 3250 100 Minus
CG6654-PA 1920 CG6654-RA 1287..1313 67..41 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:17:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12071-RE 2640 CG12071-RE 279..930 674..23 3260 100 Minus
CG12071-RD 2155 CG12071-RD 279..930 674..23 3260 100 Minus
CG12071-RG 2155 CG12071-RG 279..930 674..23 3260 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30879354..30879893 135..674 2700 100 Plus
3R 32079331 3R 30879127..30879242 19..134 580 100 Plus
Blast to na_te.dros performed 2015-02-10 23:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2510 581..412 348 72.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2456..2649 616..428 172 59.2 Minus

BS08237.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:15 Download gff for BS08237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12071-PA 1..654 19..672 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:27 Download gff for BS08237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12071-PA 1..654 19..672 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:29:54 Download gff for BS08237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12071-RB 123..784 15..678 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:30:51 Download gff for BS08237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12071-RG 275..936 15..678 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:30:51 Download gff for BS08237.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30879122..30879242 13..134 97 <- Plus
3R 30879354..30879897 135..678 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:29:54 Download gff for BS08237.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26704844..26704964 13..134 97 <- Plus
arm_3R 26705076..26705619 135..678 99   Plus

BS08237.5prime Sequence

686 bp (685 high quality bases) assembled on 2006-01-10

> BS08237.5prime
GAAGTTATCAGTCGACATGGATAAGATGACGGTTGCCCAGAAGAACGCAT
ATCTCGAGGCGCACATGGCGGTGCAGCAGCAGATGGCCCAGGCGGCCATT
CAGTTCAAGCAGCAGCAGACGTCCCAGCAACAGAACTCCCCCACGGCCAA
CAACAACAACAACAGCCAGAACAATGGCAACATGCAGCAGCAACAGCAGC
AGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAT
TATGCAGCAACCATCAAGGTGCCGCAGATCAGTTCCTCCAATGTGGCAGC
CGCGGCGGCGGGGGAGAGCACCTTCACAGTTCCGGACGACGGAATGGGAT
TCGAAGGAGGCGTGCGGGTCCTGCAGAGTCTGGGAACCTGGTCGGCGGCC
GAGCAACTGACCTACAACATCCCCAAGCCCAACCTCATCCCCTTCACAGA
GCCCTATGTCGAGGGGGGCTCCATGCACCCCGCCAGTCGACTCAAGGCCC
TGCAACAGGTGCAACAGGCATCCTCCGGGGTGCGCAAGACAAATCCCTCA
AAGTCCACCAACAAGGCATTCGAGTGCACGGTCTGCGGCAAAGGACTCGC
CCGCAAGGACAAGCTGACCATCCACATGCGCATCCACACCGGCGAGAAGC
CCTATATTTGTGAAGTATAACGAAGCTTTCTAGACC

BS08237.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12071-PA 654 CG12071-RA 1..654 17..670 3270 100 Plus
CG12071-PB 1737 CG12071-RB 1..650 17..666 3250 100 Plus
CG6654-PA 1920 CG6654-RA 1287..1313 622..648 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12071-RE 2640 CG12071-RE 279..930 15..666 3260 100 Plus
CG12071-RD 2155 CG12071-RD 279..930 15..666 3260 100 Plus
CG12071-RG 2155 CG12071-RG 279..930 15..666 3260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30879354..30879893 554..15 2700 100 Minus
3R 32079331 3R 30879127..30879242 670..555 580 100 Minus
Blast to na_te.dros performed 2015-02-12 05:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2510 108..277 348 72.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2456..2649 73..261 172 59.2 Plus

BS08237.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:16 Download gff for BS08237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12071-PA 1..654 17..670 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:28 Download gff for BS08237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12071-PA 1..654 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:56:55 Download gff for BS08237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12071-RB 123..784 11..674 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:28 Download gff for BS08237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12071-RG 275..936 11..674 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:28 Download gff for BS08237.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30879122..30879242 555..676 97 <- Minus
3R 30879354..30879897 11..554 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:56:55 Download gff for BS08237.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26704844..26704964 555..676 97 <- Minus
arm_3R 26705076..26705619 11..554 99   Minus

BS08237.complete Sequence

688 bp (688 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636134

> BS08237.complete
GAAGTTATCAGTCGACATGGATAAGATGACGGTTGCCCAGAAGAACGCAT
ATCTCGAGGCGCACATGGCGGTGCAGCAGCAGATGGCCCAGGCGGCCATT
CAGTTCAAGCAGCAGCAGACGTCCCAGCAACAGAACTCCCCCACGGCCAA
CAACAACAACAACAGCCAGAACAATGGCAACATGCAGCAGCAACAGCAGC
AGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAT
TATGCAGCAACCATCAAGGTGCCGCAGATCAGTTCCTCCAATGTGGCAGC
CGCGGCGGCGGGGGAGAGCACCTTCACAGTTCCGGACGACGGAATGGGAT
TCGAAGGAGGCGTGCGGGTCCTGCAGAGTCTGGGAACCTGGTCGGCGGCC
GAGCAACTGACCTACAACATCCCCAAGCCCAACCTCATCCCCTTCACAGA
GCCCTATGTCGAGGGGGGCTCCATGCACCCCGCCAGTCGACTCAAGGCCC
TGCAACAGGTGCAACAGGCATCCTCCGGGGTGCGCAAGACAAATCCCTCA
AAGTCCACCAACAAGGCATTCGAGTGCACGGTCTGCGGCAAAGGACTCGC
CCGCAAGGACAAGCTGACCATCCACATGCGCATCCACACCGGCGAGAAGC
CCTATATTTGTGAAGTATAACGAAGCTTTCTAGACCAT

BS08237.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12071-RE 1746 CG12071-PE 1..650 17..666 3250 100 Plus
CG12071-RD 1746 CG12071-PD 1..650 17..666 3250 100 Plus
CG12071-RG 1017 CG12071-PG 1..650 17..666 3250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12071-RE 2640 CG12071-RE 279..930 15..666 3260 100 Plus
CG12071-RD 2155 CG12071-RD 279..930 15..666 3260 100 Plus
CG12071-RG 2155 CG12071-RG 279..930 15..666 3260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30879354..30879893 554..15 2700 100 Minus
3R 32079331 3R 30879127..30879242 670..555 580 100 Minus
Blast to na_te.dros performed 2014-11-27 13:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2510 108..277 348 72.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2456..2649 73..261 172 59.2 Plus

BS08237.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:47 Download gff for BS08237.complete
Subject Subject Range Query Range Percent Splice Strand
CG12071-RA 1..654 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:24 Download gff for BS08237.complete
Subject Subject Range Query Range Percent Splice Strand
CG12071-RA 123..787 11..676 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:48 Download gff for BS08237.complete
Subject Subject Range Query Range Percent Splice Strand
CG12071-RB 129..781 17..672 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:47 Download gff for BS08237.complete
Subject Subject Range Query Range Percent Splice Strand
CG12071-RA 123..787 11..676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:42 Download gff for BS08237.complete
Subject Subject Range Query Range Percent Splice Strand
CG12071-RG 281..933 17..672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:42 Download gff for BS08237.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30879126..30879242 555..672 99 <- Minus
3R 30879354..30879891 17..554 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:48 Download gff for BS08237.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26704848..26704964 555..672 99 <- Minus
arm_3R 26705076..26705613 17..554 100   Minus

BS08237.pep Sequence

Translation from 16 to 669

> BS08237.pep
MDKMTVAQKNAYLEAHMAVQQQMAQAAIQFKQQQTSQQQNSPTANNNNNS
QNNGNMQQQQQQQQQQQQQQQQQQQQQHYAATIKVPQISSSNVAAAAAGE
STFTVPDDGMGFEGGVRVLQSLGTWSAAEQLTYNIPKPNLIPFTEPYVEG
GSMHPASRLKALQQVQQASSGVRKTNPSKSTNKAFECTVCGKGLARKDKL
TIHMRIHTGEKPYICEV*

BS08237.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12071-PG 338 CG12071-PG 1..217 1..217 1119 100 Plus
CG12071-PF 338 CG12071-PF 1..217 1..217 1119 100 Plus
CG12071-PE 581 CG12071-PE 1..217 1..217 1119 100 Plus
CG12071-PD 581 CG12071-PD 1..217 1..217 1119 100 Plus
Aef1-PB 308 CG5683-PB 29..216 38..217 182 30.3 Plus