Clone Sequence Records
BS08242.3prime Sequence
450 bp (449 high quality bases) assembled on 2006-01-10
> BS08242.3prime
ATGGTCTAGAAAGCTTTTAGTATTGTAAGCTGCGTTTAGTGCCGATATCG
TCGAGTATTTGGCGCAGCTCCTCATCCTCGAAGCGACCCTCTAGTGAAGG
AATCAGCGCCTTGGCCTCCTCGGGCGCCTCCGGACACAAATTACCCAGTG
CGGCCAGTTCGAATTTGTGCAGCTTTTTCTGCATCAGCAAGCTTCGCGCA
GACATTATCGTCTCCTTGTTTTTGAACTTTCGAAAACTATCTGTGTAGGC
GTAGGTCTTCATGAAGACCTCGGAGAACTCTTGCTCCTCGTCGGCGGATT
CGTTTTGTCGCTTTCGGTGATCGAGAAGCATGTGCACCTCCGATATCAGC
AGCGTCTCGGCATTTTCGAACTCTTTGGGAAACTGCAGGTCGGCGGCGTC
CTCATCCACCATATCCACGGGGTTCATAAAAGACATGTCGACTGATAACT
BS08242.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33520-PD | 453 | Rpb4-RD | 96..453 | 374..17 | 1690 | 98.8 | Minus |
| CG33520-PD | 453 | Rpb4-RD | 1..65 | 436..372 | 325 | 100 | Minus |
| CG33520-PC | 1584 | Rpb4-RC | 1..64 | 436..373 | 320 | 100 | Minus |
| CG33520-PE | 1629 | Rpb4-RE | 1..64 | 436..373 | 320 | 100 | Minus |
| CG33520-PA | 1644 | Rpb4-RA | 1..64 | 436..373 | 320 | 100 | Minus |
| CG33520-PB | 1689 | Rpb4-RB | 1..64 | 436..373 | 320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb4-RF | 722 | CG43662-RF | 108..527 | 436..17 | 2040 | 99 | Minus |
| Ada2a-RE | 2385 | CG43663-RE | 1833..2190 | 374..17 | 1730 | 98.9 | Minus |
| Ada2a-RC | 2340 | CG43663-RC | 1788..2145 | 374..17 | 1730 | 98.9 | Minus |
| Ada2a-RE | 2385 | CG43663-RE | 108..171 | 436..373 | 320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18253038..18253214 | 17..193 | 870 | 99.4 | Plus |
| 3R | 32079331 | 3R | 18253275..18253457 | 192..374 | 870 | 98.4 | Plus |
| 3R | 32079331 | 3R | 18255317..18255380 | 373..436 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:31:11 has no hits.
BS08242.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:21 Download gff for
BS08242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33520-PD | 1..63 | 374..436 | 100 | | Minus |
| CG33520-PD | 98..453 | 17..373 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:34 Download gff for
BS08242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33520-PD | 1..63 | 374..436 | 100 | -> | Minus |
| CG33520-PD | 98..453 | 17..373 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:41:28 Download gff for
BS08242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RF | 93..532 | 12..450 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:03 Download gff for
BS08242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RF | 93..532 | 12..450 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:03 Download gff for
BS08242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18253033..18253212 | 12..191 | 97 | <- | Plus |
| 3R | 18253275..18253455 | 192..372 | 98 | <- | Plus |
| 3R | 18255317..18255395 | 373..450 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:41:28 Download gff for
BS08242.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14078755..14078934 | 12..191 | 97 | <- | Plus |
| arm_3R | 14078997..14079177 | 192..372 | 98 | <- | Plus |
| arm_3R | 14081039..14081117 | 373..450 | 93 | | Plus |
BS08242.5prime Sequence
450 bp (449 high quality bases) assembled on 2006-01-10
> BS08242.5prime
GAAGTTATCAGTCGACATGTCTTTTATGAACCCCGTGGATATGGTGGATG
AGGACGCCGCCGACCTGCAGTTTCCCAAAGAGTTCGAAAATGCCGAGACG
CTGCTGATATCGGAGGTGCACATGCTTCTCGATCACCGAAAGCGACAAAA
CGAATCCGCCGACGAGGAGCAAGAGTTCTCCGAGGTCTTCATGAAGACCT
ACGCCTACACAGATAGTTTTCGAAAGTTCAAAAACAAGGAGACGATAATG
TCTGCGCGAAGCTTGCTGATGCAGAAAAAGCTGCACAAATTCGAACTGGC
CGCACTGGGTAATTTGTGTCCGGAGGCGCCCGAGGAGGCCAAGGCGCTGA
TTCCTTCACTAGAGGGTCGCTTCGAGGATGAGGAGCTGCGCCAAATACTC
GACGATATCGGCACTAAACGCAGCTTACAATACTAAAAGCTTTCTAGACC
BS08242.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33520-PD | 453 | Rpb4-RD | 96..453 | 79..436 | 1690 | 98.8 | Plus |
| CG33520-PD | 453 | Rpb4-RD | 1..65 | 17..81 | 325 | 100 | Plus |
| CG33520-PC | 1584 | Rpb4-RC | 1..64 | 17..80 | 320 | 100 | Plus |
| CG33520-PE | 1629 | Rpb4-RE | 1..64 | 17..80 | 320 | 100 | Plus |
| CG33520-PA | 1644 | Rpb4-RA | 1..64 | 17..80 | 320 | 100 | Plus |
| CG33520-PB | 1689 | Rpb4-RB | 1..64 | 17..80 | 320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:02:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb4-RF | 722 | CG43662-RF | 108..527 | 17..436 | 2040 | 99 | Plus |
| Ada2a-RE | 2385 | CG43663-RE | 1833..2190 | 79..436 | 1730 | 98.9 | Plus |
| Ada2a-RC | 2340 | CG43663-RC | 1788..2145 | 79..436 | 1730 | 98.9 | Plus |
| Ada2a-RE | 2385 | CG43663-RE | 108..171 | 17..80 | 320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18253038..18253214 | 436..260 | 870 | 99.4 | Minus |
| 3R | 32079331 | 3R | 18253275..18253457 | 261..79 | 870 | 98.4 | Minus |
| 3R | 32079331 | 3R | 18255317..18255380 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 10:02:51 has no hits.
BS08242.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:22 Download gff for
BS08242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33520-PD | 1..63 | 17..79 | 100 | | Plus |
| CG33520-PD | 98..453 | 80..436 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:36 Download gff for
BS08242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33520-PD | 1..63 | 17..79 | 100 | -> | Plus |
| CG33520-PD | 98..453 | 80..436 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:26:08 Download gff for
BS08242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RF | 93..532 | 3..441 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:55:04 Download gff for
BS08242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RF | 93..532 | 3..441 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:55:04 Download gff for
BS08242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18253033..18253212 | 262..441 | 97 | <- | Minus |
| 3R | 18253275..18253455 | 81..261 | 98 | <- | Minus |
| 3R | 18255317..18255395 | 3..80 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:26:08 Download gff for
BS08242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14078755..14078934 | 262..441 | 97 | <- | Minus |
| arm_3R | 14078997..14079177 | 81..261 | 98 | <- | Minus |
| arm_3R | 14081039..14081117 | 3..80 | 93 | | Minus |
BS08242.complete Sequence
452 bp (452 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636135
> BS08242.complete
GAAGTTATCAGTCGACATGTCTTTTATGAACCCCGTGGATATGGTGGATG
AGGACGCCGCCGACCTGCAGTTTCCCAAAGAGTTCGAAAATGCCGAGACG
CTGCTGATATCGGAGGTGCACATGCTTCTCGATCACCGAAAGCGACAAAA
CGAATCCGCCGACGAGGAGCAAGAGTTCTCCGAGGTCTTCATGAAGACCT
ACGCCTACACAGATAGTTTTCGAAAGTTCAAAAACAAGGAGACGATAATG
TCTGCGCGAAGCTTGCTGATGCAGAAAAAGCTGCACAAATTCGAACTGGC
CGCACTGGGTAATTTGTGTCCGGAGGCGCCCGAGGAGGCCAAGGCGCTGA
TTCCTTCACTAGAGGGTCGCTTCGAGGATGAGGAGCTGCGCCAAATACTC
GACGATATCGGCACTAAACGCAGCTTACAATACTAAAAGCTTTCTAGACC
AT
BS08242.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb4-RF | 420 | CG43662-PF | 1..420 | 17..436 | 2040 | 99 | Plus |
| Ada2a-RG | 1584 | CG43663-PG | 1..64 | 17..80 | 320 | 100 | Plus |
| Ada2a-RE | 1629 | CG43663-PE | 1..64 | 17..80 | 320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb4-RF | 722 | CG43662-RF | 108..527 | 17..436 | 2040 | 99 | Plus |
| Ada2a-RE | 2385 | CG43663-RE | 1833..2190 | 79..436 | 1730 | 98.9 | Plus |
| Ada2a-RC | 2340 | CG43663-RC | 1788..2145 | 79..436 | 1730 | 98.9 | Plus |
| Ada2a-RE | 2385 | CG43663-RE | 108..171 | 17..80 | 320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18253038..18253214 | 436..260 | 870 | 99.4 | Minus |
| 3R | 32079331 | 3R | 18253275..18253457 | 261..79 | 870 | 98.4 | Minus |
| 3R | 32079331 | 3R | 18255317..18255380 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:21:05 has no hits.
BS08242.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:48 Download gff for
BS08242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RD | 1..63 | 17..79 | 100 | -> | Plus |
| Rpb4-RD | 98..453 | 80..436 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:49 Download gff for
BS08242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RA | 70..147 | 3..79 | 93 | -> | Plus |
| Rpb4-RA | 1827..2187 | 80..441 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:38 Download gff for
BS08242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RF | 108..525 | 17..434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:49 Download gff for
BS08242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RE | 1812..2172 | 81..441 | 98 | | Plus |
| Rpb4-RE | 70..147 | 3..80 | 92 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:34 Download gff for
BS08242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RF | 108..525 | 17..434 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:34 Download gff for
BS08242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18253040..18253212 | 262..434 | 99 | <- | Minus |
| 3R | 18253275..18253455 | 81..261 | 98 | <- | Minus |
| 3R | 18255317..18255380 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:38 Download gff for
BS08242.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14078762..14078934 | 262..434 | 99 | <- | Minus |
| arm_3R | 14078997..14079177 | 81..261 | 98 | <- | Minus |
| arm_3R | 14081039..14081102 | 17..80 | 100 | | Minus |
BS08242.pep Sequence
Translation from 16 to 435
> BS08242.pep
MSFMNPVDMVDEDAADLQFPKEFENAETLLISEVHMLLDHRKRQNESADE
EQEFSEVFMKTYAYTDSFRKFKNKETIMSARSLLMQKKLHKFELAALGNL
CPEAPEEAKALIPSLEGRFEDEELRQILDDIGTKRSLQY*
BS08242.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb4-PF | 139 | CG43662-PF | 1..139 | 1..139 | 706 | 100 | Plus |
