Clone Sequence Records
BS08244.3prime Sequence
888 bp (758 high quality bases) assembled on 2006-01-10
> BS08244.3prime
ATGGTCTAGAAAGCTTCTACTTAGTGGGTATGAAACGCGCCTTGACCGCC
TGTCCCATCGGCAAGTGCAGCAGTTGCTGCTGCTGCGCCGCCTGCTGCTG
TTGTTGCGCCGCCTGCTGCTGCTGTTGTTGTGCCGCCTGCTGCTGCGCCT
GCTGCTGTGCCGCCTGCTGCTGCATGTGCTGATTGATCTGCTGCTGGATG
GACAGGCCGCTGACATTGCTGATATGCTGGCTGTGGAGCGATTCGTTGAT
CTCGATCTTGATGGCCGTGGCGGCCAGCGTTGTCGCCTTGTTCTTGTTCT
TCGGCGGACGCCCACGTTGCCCTGTCGTGTGCTGCAGTGACAACGGCTGG
CCGATCATCGCCAGCGGCTGTTGCGACGTCTGCAGCGTGCCCGCCTTCTT
GGATCGCTTCGGAGGCGGCAGCTCGTGGTGGGCGTGATTGGTGAGCAGGT
GCTTGGAGAGGTGCTGGCGCACCGCAAAGGACTCGGCACAATTGGCCACC
GGACAGGAGAGGTAGCGACCCTCGACATGGCGCTGCACGTGCTTCTTCAG
CAGCGACTCCTGATTGAAGCTACTCGGGCAGATGTCGCACTTGAACTTGA
ACTCGTCGTGCATCTTGAGGTGCTGGTCGAGATGGGCCTGCTGCAGGAAC
TTCTCGTCGCACTTGTCGCACTCGTACGGAAAGGCCAGGCCGTGGGTCTT
CATGTGCGTATGCAGCTGCGACTGCAGTTTGAAGTTCTTCTCCGGACAAC
GCGGACAGTAGTAGCCGGTGACCCCAGCGTGCGCCTGCAGGTGCTGGTTC
AGCGAGGTCACCTGCGTGAACTTCTTGTTGCACACGTTGCAGCAATACTG
CTGCACCTTGTGGTGCGACTTCATATGGTTGTTCAGGT
BS08244.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32772-PA | 1632 | CG32772-RA | 761..1632 | 888..17 | 4335 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:24:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32772-RF | 2345 | CG32772-RF | 457..1328 | 888..17 | 4345 | 99.9 | Minus |
CG32772-RE | 3105 | CG32772-RE | 1217..2088 | 888..17 | 4345 | 99.9 | Minus |
CG32772-RD | 2145 | CG32772-RD | 457..1328 | 888..17 | 4345 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4913211..4913785 | 888..314 | 2860 | 99.8 | Minus |
X | 23542271 | X | 4913846..4914144 | 315..17 | 1495 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 17:24:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 11499..11651 | 231..84 | 139 | 60 | Minus |
TART-A | 13424 | TART-A 13424bp | 321..473 | 231..84 | 139 | 60 | Minus |
BS08244.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:25 Download gff for
BS08244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32772-PA | 761..1632 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:40 Download gff for
BS08244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32772-PA | 761..1632 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:26:55 Download gff for
BS08244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32772-RD | 457..1331 | 12..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:22 Download gff for
BS08244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32772-RD | 457..1331 | 12..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:22 Download gff for
BS08244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4913211..4913783 | 316..888 | 99 | -> | Minus |
X | 4913846..4914147 | 12..315 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:26:55 Download gff for
BS08244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4807244..4807816 | 316..888 | 99 | -> | Minus |
arm_X | 4807879..4808180 | 12..315 | 99 | | Minus |
BS08244.5prime Sequence
851 bp (839 high quality bases) assembled on 2006-01-10
> BS08244.5prime
GAAGTTATCAGTCGACATGGACACCATCTGTAGATTGTGCTTCCAAACGG
CAACGTTGTTCCAGGTGCCCGGCTATAGCATACCCACGTGCGTCCGCTGC
TCGGAGCAGTTGACAAATAATTCCAACTTCCATCAGTCGGCGGCGGCCGC
TGCAGCCGTCGCTGCCTCTGCCTCGGCCGCAGTTGCCGCCTCTGCAGCAG
CGGCGGCCACCTCCTCGTCGACGGCCTCCTCCAGCGACAGCGACGCCATC
GCGCAGCAGCAGCAGCATCAGAATCCGCAGCAGCAGCAGCATCAGAACTC
GCAACAGCAACAACAACAACAGCAGCAAATGCAATCATCCAGTTCTTCCG
AGAACCTACAGTCGCAGGACGACTCCGAAGACGTGGATCTGATATTCAAC
GAGGAGGGCTCCTGCCCGCTATGCAACAAAACTTTCTCGCGCAAATCCTC
GCTCATGACGCACATACGAAATCACTCGGCGGAGCGTAAGTTTGTGTGCA
CCTACTGCCACAAAGGCTTCACGCAGGCGGCCAACTTGCGGAACCACGAA
CGCATCCACACGAACGATCGGCCATATCAGTGCGTGGACTGTGGCAAGAC
CTTCACGCAGATCACCAATTTGAACAATCACCGCCGGCTGCACACCGGCG
AACGGCCCTTCGTTTGCAATGAACCGGAGTGCGGTCGCAGCTTCGCCCAG
GTGACGAACCTGAACAACCATATGAAGTCGCACCACAAGGTGCAGCAGTA
CTGCTGCAACGTGTGCAACAAGAAGTTCACGCAGGTGACCTCGCTGAACC
AGCACCTGCANGCGCACGCTGGGGTCACCGGCTACTACTGTCCGCGTTGT
C
BS08244.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32772-PA | 1632 | CG32772-RA | 1..500 | 17..516 | 2500 | 100 | Plus |
CG32772-PA | 1632 | CG32772-RA | 567..904 | 514..851 | 1671 | 99.7 | Plus |
CG3849-PB | 1974 | Lasp-RB | 810..837 | 301..328 | 140 | 100 | Plus |
CG12254-PA | 2592 | MED25-RA | 2088..2115 | 301..328 | 140 | 100 | Plus |
CG14441-PA | 3378 | CG14441-RA | 2850..2876 | 301..327 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32772-RE | 3105 | CG32772-RE | 526..1360 | 17..851 | 4164 | 99.9 | Plus |
CG32772-RC | 3037 | CG32772-RC | 658..1492 | 17..851 | 4164 | 99.9 | Plus |
CG32772-RF | 2345 | CG32772-RF | 131..600 | 382..851 | 2339 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4910851..4911180 | 55..384 | 1650 | 100 | Plus |
X | 23542271 | X | 4912943..4913131 | 514..702 | 945 | 100 | Plus |
X | 23542271 | X | 4913201..4913354 | 698..851 | 759 | 99.4 | Plus |
X | 23542271 | X | 4912743..4912876 | 383..516 | 670 | 100 | Plus |
X | 23542271 | X | 4909759..4909797 | 17..55 | 195 | 100 | Plus |
X | 23542271 | X | 3291222..3291268 | 155..201 | 190 | 93.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:36:36 has no hits.
BS08244.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:26 Download gff for
BS08244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32772-PA | 1..499 | 17..515 | 100 | | Plus |
CG32772-PA | 569..904 | 516..851 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:41 Download gff for
BS08244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32772-PA | 1..499 | 17..515 | 100 | -> | Plus |
CG32772-PA | 569..904 | 516..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:25:39 Download gff for
BS08244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32772-RC | 658..1492 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:59:22 Download gff for
BS08244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32772-RC | 658..1492 | 17..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:59:22 Download gff for
BS08244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4909759..4909797 | 17..55 | 100 | -> | Plus |
X | 4910852..4911178 | 56..382 | 100 | -> | Plus |
X | 4912743..4912875 | 383..515 | 100 | -> | Plus |
X | 4912945..4913129 | 516..700 | 100 | -> | Plus |
X | 4913204..4913354 | 701..851 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:25:39 Download gff for
BS08244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4806776..4806908 | 383..515 | 100 | -> | Plus |
arm_X | 4806978..4807162 | 516..700 | 100 | -> | Plus |
arm_X | 4803792..4803830 | 17..55 | 100 | -> | Plus |
arm_X | 4804885..4805211 | 56..382 | 100 | -> | Plus |
arm_X | 4807237..4807387 | 701..851 | 99 | | Plus |
BS08244.complete Sequence
1595 bp (1595 high quality bases) assembled on 2006-01-18
GenBank Submission: KX803078
> BS08244.complete
GAAGTTATCAGTCGACATGGACACCATCTGTAGATTGTGCTTCCAAACGG
CAACGTTGTTCCAGGTGCCCGGCTATAGCATACCCACGTGCGTCCGCTGC
TCGGAGCAGTTGACAAATAATTCCAACTTCCATCAGTCGGCGGCGGCCGC
TGCAGCCGTCGCTGCCTCTGCCTCGGCCGCAGTTGCCGCCTCTGCAGCAG
CGGCGGCCACCTCCTCGTCGACGGCCTCCTCCAGCGACAGCGACGCCATC
GCGCAGCAGCAGCAGCATCAGAATCCGCAGCAGCAGCAGCATCAGAACTC
GCAACAGCAACAACAACAACAGCAGCAAATGCAATCATCCAGTTCTTCCG
AGAACCTACAGTCGCAGGACGACTCCGAAGACGTGGATCTGATATTCAAC
GAGGAGGGCTCCTGCCCGCTATGCAACAAAACTTTCTCGCGCAAATCCTC
GCTCATGACGCACATACGAAATCACTCGGCGGAGCGTAAGTTTGTGTGCA
CCTACTGCCACAAAGGCTTCACGCAGGCGGCCAACTTGCGGAACCACGAA
CGCATCCACACGAACGATCGGCCATATCAGTGCGTGGACTGTGGCAAGAC
CTTCACGCAGATCACCAATTTGAACAATCACCGCCGGCTGCACACCGGCG
AACGGCCCTTCGTTTGCAATGAACCGGAGTGCGGTCGCAGCTTCGCCCAG
GTGACGAACCTGAACAACCATATGAAGTCGCACCACAAGGTGCAGCAGTA
CTGCTGCAACGTGTGCAACAAGAAGTTCACGCAGGTGACCTCGCTGAACC
AGCACCTGCAGGCGCACGCTGGGGTCACCGGCTACTACTGTCCGCGTTGT
CCGGAGAAGAACTTCAAACTGCAGTCGCAGCTGCATACGCACATGAAGAC
CCACGGCCTGGCCTTTCCGTACGAGTGCGACAAGTGCGACGAGAAGTTCC
TGCAGCAGGCCCATCTCGACCAGCACCTCAAGATGCACGACGAGTTCAAG
TTCAAGTGCGACATCTGCCCGAGTAGCTTCAATCAGGAGTCGCTGCTGAA
GAAGCACGTGCAGCGCCATGTCGAGGGTCGCTACCTCTCCTGTCCGGTGG
CCAATTGTGCCGAGTCCTTTGCGGTGCGCCAGCACCTCTCCAAGCACCTG
CTCACCAATCACGCCCACCACGAGCTGCCGCCTCCGAAGCGATCCAAGAA
GGCGGGCACGCTGCAGACGTCGCAACAGCCGCTGGCGATGATCGGCCAGC
CGTTGTCACTGCAGCACACGACAGGGCAACGTGGGCGTCCGCCGAAGAAC
AAGAACAAGGCGACAACGCTGGCCGCCACGGCCATCAAGATCGAGATCAA
CGAATCGCTCCACAGCCAGCATATCAGCAATGTCAGCGGCCTGTCCATCC
AGCAGCAGATCAATCAGCACATGCAGCAGCAGGCGGCACAGCAGCAGGCG
CAGCAGCAGGCGGCACAACAACAGCAGCAGCAGGCGGCGCAACAACAGCA
GCAGGCGGCGCAGCAGCAGCAACTGCTGCACTTGCCGATGGGACAGGCGG
TCAAGGCGCGTTTCATACCCACTAAGTAGAAGCTTTCTAGACCAT
BS08244.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32772-RE | 1563 | CG32772-PE | 1..1563 | 17..1579 | 7815 | 100 | Plus |
CG32772-RC | 1563 | CG32772-PC | 1..1563 | 17..1579 | 7815 | 100 | Plus |
CG32772-RF | 1125 | CG32772-PF | 1..1125 | 455..1579 | 5625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32772-RE | 3105 | CG32772-RE | 526..2088 | 17..1579 | 7815 | 100 | Plus |
CG32772-RC | 3037 | CG32772-RC | 658..2220 | 17..1579 | 7815 | 100 | Plus |
CG32772-RF | 2345 | CG32772-RF | 131..1328 | 382..1579 | 5990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4913201..4913785 | 698..1282 | 2925 | 100 | Plus |
X | 23542271 | X | 4910851..4911180 | 55..384 | 1650 | 100 | Plus |
X | 23542271 | X | 4913846..4914144 | 1281..1579 | 1495 | 100 | Plus |
X | 23542271 | X | 4912943..4913131 | 514..702 | 945 | 100 | Plus |
X | 23542271 | X | 4912743..4912876 | 383..516 | 670 | 100 | Plus |
X | 23542271 | X | 4909759..4909797 | 17..55 | 195 | 100 | Plus |
X | 23542271 | X | 3291222..3291268 | 155..201 | 190 | 93.6 | Plus |
Blast to na_te.dros performed 2014-11-28 00:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 321..473 | 1365..1512 | 139 | 60 | Plus |
TART-A | 13424 | TART-A 13424bp | 11499..11651 | 1365..1512 | 139 | 60 | Plus |
BS08244.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:50 Download gff for
BS08244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32772-RB | 40..172 | 383..515 | 100 | -> | Plus |
CG32772-RB | 242..1305 | 516..1579 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:50 Download gff for
BS08244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32772-RB | 651..783 | 383..515 | 100 | -> | Plus |
CG32772-RB | 853..1919 | 516..1584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:44 Download gff for
BS08244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32772-RC | 658..2220 | 17..1579 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:51 Download gff for
BS08244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32772-RB | 651..783 | 383..515 | 100 | -> | Plus |
CG32772-RB | 853..1919 | 516..1584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:04 Download gff for
BS08244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32772-RC | 658..2220 | 17..1579 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:04 Download gff for
BS08244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4912743..4912875 | 383..515 | 100 | -> | Plus |
X | 4912945..4913129 | 516..700 | 100 | -> | Plus |
X | 4910852..4911178 | 56..382 | 100 | -> | Plus |
X | 4909759..4909797 | 17..55 | 100 | -> | Plus |
X | 4913204..4913783 | 701..1280 | 100 | -> | Plus |
X | 4913846..4914144 | 1281..1579 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:44 Download gff for
BS08244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4803792..4803830 | 17..55 | 100 | -> | Plus |
arm_X | 4804885..4805211 | 56..382 | 100 | -> | Plus |
arm_X | 4806776..4806908 | 383..515 | 100 | -> | Plus |
arm_X | 4806978..4807162 | 516..700 | 100 | -> | Plus |
arm_X | 4807237..4807816 | 701..1280 | 100 | -> | Plus |
arm_X | 4807879..4808177 | 1281..1579 | 100 | | Plus |
BS08244.pep Sequence
Translation from 16 to 1578
> BS08244.pep
MDTICRLCFQTATLFQVPGYSIPTCVRCSEQLTNNSNFHQSAAAAAAVAA
SASAAVAASAAAAATSSSTASSSDSDAIAQQQQHQNPQQQQHQNSQQQQQ
QQQQMQSSSSSENLQSQDDSEDVDLIFNEEGSCPLCNKTFSRKSSLMTHI
RNHSAERKFVCTYCHKGFTQAANLRNHERIHTNDRPYQCVDCGKTFTQIT
NLNNHRRLHTGERPFVCNEPECGRSFAQVTNLNNHMKSHHKVQQYCCNVC
NKKFTQVTSLNQHLQAHAGVTGYYCPRCPEKNFKLQSQLHTHMKTHGLAF
PYECDKCDEKFLQQAHLDQHLKMHDEFKFKCDICPSSFNQESLLKKHVQR
HVEGRYLSCPVANCAESFAVRQHLSKHLLTNHAHHELPPPKRSKKAGTLQ
TSQQPLAMIGQPLSLQHTTGQRGRPPKNKNKATTLAATAIKIEINESLHS
QHISNVSGLSIQQQINQHMQQQAAQQQAQQQAAQQQQQQAAQQQQQAAQQ
QQLLHLPMGQAVKARFIPTK*
BS08244.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32772-PE | 520 | CG32772-PE | 1..520 | 1..520 | 2762 | 100 | Plus |
CG32772-PC | 520 | CG32772-PC | 1..520 | 1..520 | 2762 | 100 | Plus |
CG32772-PF | 374 | CG32772-PF | 1..374 | 147..520 | 2031 | 100 | Plus |
CG32772-PD | 374 | CG32772-PD | 1..374 | 147..520 | 2031 | 100 | Plus |
crol-PC | 756 | CG14938-PC | 97..678 | 16..511 | 557 | 29.7 | Plus |