Clone Sequence Records
BS08253.3prime Sequence
903 bp (727 high quality bases) assembled on 2006-01-10
> BS08253.3prime
ATGGTCTAGAAAGCTTTTACTTCTTGCTCTTGCGCTTCTGCTTGGGCTCC
TCCCCTCCGGTCGCTGAGGCTGCTGATGCGGCTGAAGCTGCTGCTGCTGC
AGTGCCCGTTGCGTTCAGGAGATTTATGTTCGGCTTGACCGTTCCCTTCT
TCAGGGTGGCCGGCTGCTGGGGGGTAGCCTGCGTGATGTTGTTATTGGTC
GCTGCTGCCGCATTGGCAGCTCCAGCGGTTTGGGACGACAGGTTGTTTGA
CGGCGTGGCCGGCGTCTCGTCCAGGAAGAGCGGATTCTTCACCTCCATCT
CACCAGTGGGCGCCAGGCCGGGGCACTCGTACACCGTGTAGTCGCCCTCC
TCGTTGTCGTCGTCGCTCTCCACGTCCGACATGCCGCAGCTACCATCCGT
GGCCTGGTTCTCCATGGCGATGATCTGCTGCTTCTGGTGCTGGTAGTGGT
ACATTTGGGCGCTCTGGGCCAGCTTTCTGTCACCGGACGGCGAGACATCC
TTGTTCGGCCCGGTAACGCCGTAGGCAGGGTATTCCACGTCCGCTGCTGC
CTTGTGTCGATTATGGAACCAAGTTACTCCGAGGGCAAGAAGCCCAACGG
TCACCGCTGCACTAACCCCCGCTATTAGGGCCACTATGTACACCCCCATC
TCGCTGTTCATGCCCAGGTGCTGGCGCAGCACAATCTGCTCCTGACTGGA
ATCACCTCCGTTGACCAGCGTCAAATGAGAGGGCGCTTTGCTTTGCTTTT
GCAGCTTGTTGATCAGTGCGTTAAGTTCATGGGGTGGTTGTTCTTTGCTC
TGGGGAATATTCACTCCCGCCACGGCTGCGGCGGCGGCGGACTGGGGATT
GATGCGGTGGAAGTTGGTGTTGGCGGCGTCAAGCAGTTTGGGCGGCTCAA
CGG
BS08253.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30420-PB | 1611 | Atf-2-RB | 725..1611 | 903..17 | 4435 | 100 | Minus |
CG30420-PA | 2553 | Atf-2-RA | 1667..2553 | 903..17 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:31:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44247-RB | 3629 | CG44247-RB | 1238..2124 | 903..17 | 4435 | 100 | Minus |
CG44247-RA | 2696 | CG44247-RA | 1238..2124 | 903..17 | 4435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:31:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24879163..24879716 | 570..17 | 2770 | 100 | Minus |
2R | 25286936 | 2R | 24878769..24879104 | 903..568 | 1680 | 100 | Minus |
Blast to na_te.dros performed 2015-01-31 15:31:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1046..1119 | 457..382 | 130 | 70.1 | Minus |
BS08253.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:36 Download gff for
BS08253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30420-PB | 725..1611 | 17..903 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:50 Download gff for
BS08253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30420-PA | 1667..2553 | 17..903 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:15:23 Download gff for
BS08253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44247-RA | 1238..2127 | 13..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:36:05 Download gff for
BS08253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44247-RA | 1238..2127 | 13..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:36:05 Download gff for
BS08253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24878769..24879102 | 570..903 | 100 | -> | Minus |
2R | 24879164..24879719 | 13..569 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:15:23 Download gff for
BS08253.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20766292..20766625 | 570..903 | 100 | -> | Minus |
arm_2R | 20766687..20767242 | 13..569 | 99 | | Minus |
BS08253.5prime Sequence
910 bp (822 high quality bases) assembled on 2006-01-10
> BS08253.5prime
GAAGTTATCAGTCGACATGGACACCGCCGGAGACATGGATCACCTGGCCA
GTGTGTCCTTCGGCGACTTTGAGACAAAATCCCCAGAGGGCGACGTATCC
TGCTATCAGAACTTTCGGGCACAGACGGAACATGTTTCGCTAGACATTTC
TCTCGGGCAGAAGTCAGACACTCTATTTGCCGCCGACCAAACGCCCACGC
CTACGCGACTCATCAAGAACTGCGACGAGGTGGGTCTCTTCGAGGACCTG
CAGCACGTAAATCCATTTGACATTGGATTCCAGCAAGCAGCGGAGCGAAA
TGTCAGCGGCACTCCGAGTCGCCCAGAGGCTCGACCCAATGACGGTGAGT
CCCTGCACACGCCCCAGGTGTATCCCGTCGAGGCCCCCACCGTGGTATCA
GTTCCGTCTGAAAATCAGGTCCCACAAAGTGTCAGCTGCGGCGATATGGA
TGTGGACCAGCTTCTGGCCACGACAGTTACCTCGCCTTCCAAAGCCAGTC
AAGATGGTCCGCCGCCGCTGCAGTTGATCCAGCCCCAGGTCCTAACATGG
GTGCTGCCTGCGCAGTCAGTTCCCATTTCCATCGCTACAGTTGATTGTAA
CAGAAACAGGGTGAAGCCGACTGGTGCCATTCATCCCTTCATACTGCCGA
AACCCACTGCGAAAGAATTAAACAAGACCAGTAAAAGACCCGAGCCTATT
TTGGTCAGTTGCAACCCACCTAATAACGAGCCCAGTAGCGCCAGTCTGAC
GCCCACCTCACAGCTGCCCATCAAGGAGCGATTGAAGGCCATTATCCACA
GCAATAATAACAGACGAAGTTTCTCCACACCGCCCAGGGCTGCGAAAGCA
AAAGATCGCAGTCGGGACGAGGATTGTATGGAGCGACGAAGAGCAGCAGC
CTCTCGTTAC
BS08253.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30420-PA | 2553 | Atf-2-RA | 1..894 | 17..910 | 4420 | 99.7 | Plus |
CG30420-PC | 1146 | Atf-2-RC | 1..894 | 17..910 | 4420 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:55:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atf-2-RA | 1349 | CG44246-RA | 100..996 | 14..910 | 4455 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24870207..24871103 | 14..910 | 4455 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:54:58 has no hits.
BS08253.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:37 Download gff for
BS08253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30420-PC | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:52 Download gff for
BS08253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30420-PC | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:25:39 Download gff for
BS08253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atf-2-RA | 97..996 | 8..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:35:03 Download gff for
BS08253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atf-2-RA | 97..996 | 8..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:35:03 Download gff for
BS08253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24870204..24871103 | 8..910 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:25:39 Download gff for
BS08253.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20757727..20758626 | 8..910 | 99 | | Plus |
BS08253.complete Sequence
2585 bp assembled on 2008-08-15
GenBank Submission: KX806430
> BS08253.complete
GAAGTTATCAGTCGACATGGACACCGCCGGAGACATGGATCACCTGGCCA
GTGTGTCCTTCGGCGACTTTGAGACAAAATCCCCAGAGGGCGACGTATCC
TGCTATCAGAACTTTCGGGCACAGACGGAACATGTTTCGCTAGACATTTC
TCTCGGGCAGAAGTCAGACACTCTATTTGCCGCCGACCAAACGCCCACGC
CTACGCGACTCATCAAGAACTGCGACGAGGTGGGTCTCTTCGAGGACCTG
CAGCACGTAAATCCATTTGACATTGGATTCCAGCAAGCAGCGGAGCGAAA
TGTCAGCGGCACTCCGAGTCGCCCAGAGGCTCGACCCAATGACGGTGAGT
CCCTGCACACGCCCCAGGTGTATCCCGTCGAGGCCCCCACCGTGGTATCA
GTTCCGTCTGAAAATCAGGTCCCACAAAGTGTCAGCTGCGGCGATATGGA
TGTGGACCAGCTTCTGGCCACGACAGTTACCTCGCCTTCCAAAGCCAGTC
AAGATGGTCCGCCGCCGCTGCAGTTGATCCAGCCCCAGGTCCTAACATGG
GTGCTGCCTGCGCAGTCAGTTCCCATTTCCATCGCTACAGTTGATTGTAA
CAGAAACAGGGTGAAGCCGACTGGTGCCATTCATCCCTTCATACTGCCGA
AACCCACTGCGAAAGAATTAAACAAGACCAGTAAAAGACCCGAGCCTATT
TTGGTCAGTTGCAACCCACCTAATAACGAGCCCAGTAGCGCCAGTCTGAC
GCCCACCTCACAGCTGCCCATCAAGGAGCGATTGAAGGCCATTATCCACA
GCAATAATAACAGACGAAGTTTCTCCACACCGCCCAAGGCTGCGAAAGCA
AAGGATCGCAGTCGGGACGAGGATTGTATGGAGCGACGAAGAGCAGCAGC
CTCTCGTTACCGTAACAAGATGCGAAACGAGCATAAGGACCTCATCAAAC
AGAACGCCCAGCTGCAGCAGGAGAATCAAGAACTGCACGAAAGAATTTCC
AGATTAGAAAAGGAACTGCAGCAGCACAGGAGTCACAGCAGCTTAGCTGG
CGGATTGCGCCGCCGACCCATTCAGCCGCCTGTGATGGATCCGCAGAGTG
AGCAAGAGTATGCTTTTCTGGCCCAGATGATGGAGCAGTATGCCCGCCGT
CGGCTGCAGCAGCAGTTCGACCAACAGCTGCACGAAATCAACCTGAAGAT
GGATCGTCAGCGGCAGCTCTTGGAGCAGGAGCGGTACCGCCAGCGGCAGC
AGGAGCTCCAGGTACAGCGCGAGGCGGAGGAGGACTACGAGTCCAACGGA
AACAACCTGAACCAGCAGTACGACCAGTACGACAACGCGGAGGCAGAGGC
CAGCTACGGCAGTCCGATGGAGGCAGTCTCTGATCTCCAAAGTCCTCCAT
TGTACCTGCCTCGCCTGCCCAACCTACCACCCTTGCCCAGCCTTCCGAAT
CGGCCCAGCCTGGGCAACTCCCCGAACAGGAACAGTGTGCTCCGCGAACG
GATTCCCTTTGCTGTAGGTCCCAGCGACGCTCGCTTCTTTGACAACCCGA
ACGACCCTTCGGGGGAGCTGGATTCCCGGGCGCTGGAGGACTACGAGGAG
TATGCTCCCATTGAGCCCACAACCGAAGTAGCCACCACCGCCAGTAAGAC
CAAGATCGATACGCCAGTACCGGCTCCCGTGCCCGTTGAGCCGCCCAAAC
TGCTTGACGCCGCCAACACCAACTTCCACCGCATCAATCCCCAGTCCGCC
GCCGCCGCAGCCGTGGCGGGAGTGAATATTCCCCAGAGCAAAGAACAACC
ACCCCATGAACTTAACGCACTGATCAACAAGCTGCAAAAGCAAAGCAAAG
CGCCCTCTCATTTGACGCTGGTCAACGGAGGTGATTCCAGTCAGGAGCAG
ATTGTGCTGCGCCAGCACCTGGGCATGAACAGCGAGATGGGGGTGTACAT
AGTGGCCCTAATAGCGGGGGTTAGTGCAGCGGTGACCGTTGGGCTTCTTG
CCCTCGGAGTAACTTGGTTCCATAATCGACACAAGGCAGCAGCGGACGTG
GAATACCCTGCCTACGGCGTTACCGGGCCGAACAAGGATGTCTCGCCGTC
CGGTGACAGAAAGCTGGCCCAGAGCGCCCAAATGTACCACTACCAGCACC
AGAAGCAGCAGATCATCGCCATGGAGAACCAGGCCACGGATGGTAGCTGC
GGCATGTCGGACGTGGAGAGCGACGACGACAACGAGGAGGGCGACTACAC
GGTGTACGAGTGCCCCGGCCTGGCGCCCACTGGTGAGATGGAGGTGAAGA
ATCCGCTCTTCCTGGACGAGACGCCGGCCACGCCGTCAAACAACCTGTCG
TCCCAAACCGCTGGAGCTGCCAATGCGGCAGCAGCGACCAATAACAACAT
CACGCAGGCTACCCCCCAGCAGCCGGCCACCCTGAAGAAGGGAACGGTCA
AGCCGAACATAAATCTCCTGAACGCAACGGGCACTGCAGCAGCAGCAGCT
TCAGCCGCATCAGCAGCCTCAGCGACCGGAGGGGAGGAGCCCAAGCAGAA
GCGCAAGAGCAAGAAGTAAAAGCTTTCTAGACCAT
BS08253.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44247-RB | 1611 | CG44247-PB | 94..1611 | 1052..2569 | 7590 | 100 | Plus |
CG44247-RA | 1611 | CG44247-PA | 94..1611 | 1052..2569 | 7590 | 100 | Plus |
Atf-2-RA | 1146 | CG44246-PA | 1..1036 | 17..1052 | 5180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44247-RB | 3629 | CG44247-RB | 607..2124 | 1052..2569 | 7590 | 100 | Plus |
CG44247-RA | 2696 | CG44247-RA | 607..2124 | 1052..2569 | 7590 | 100 | Plus |
Atf-2-RA | 1349 | CG44246-RA | 100..1138 | 14..1052 | 5195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24870207..24871246 | 14..1053 | 5200 | 100 | Plus |
2R | 25286936 | 2R | 24878138..24879104 | 1052..2018 | 4835 | 100 | Plus |
2R | 25286936 | 2R | 24879163..24879716 | 2016..2569 | 2770 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:09:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1046..1119 | 2129..2204 | 130 | 70.1 | Plus |
Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 639..744 | 1659..1764 | 124 | 61.1 | Plus |
BS08253.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:25:37 Download gff for
BS08253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atf-2-RA | 138..2699 | 8..2573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:15 Download gff for
BS08253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44247-RA | 607..2122 | 1052..2567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:39 Download gff for
BS08253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atf-2-RA | 144..2694 | 17..2567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:11 Download gff for
BS08253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44247-RA | 607..2122 | 1052..2567 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:11 Download gff for
BS08253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24870210..24871245 | 17..1052 | 100 | -> | Plus |
2R | 24878139..24879102 | 1053..2016 | 100 | -> | Plus |
2R | 24879164..24879714 | 2017..2567 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:15 Download gff for
BS08253.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20757733..20758768 | 17..1052 | 100 | -> | Plus |
arm_2R | 20765662..20766625 | 1053..2016 | 100 | -> | Plus |
arm_2R | 20766687..20767237 | 2017..2567 | 100 | | Plus |
BS08253.pep Sequence
Translation from 16 to 2568
> BS08253.pep
MDTAGDMDHLASVSFGDFETKSPEGDVSCYQNFRAQTEHVSLDISLGQKS
DTLFAADQTPTPTRLIKNCDEVGLFEDLQHVNPFDIGFQQAAERNVSGTP
SRPEARPNDGESLHTPQVYPVEAPTVVSVPSENQVPQSVSCGDMDVDQLL
ATTVTSPSKASQDGPPPLQLIQPQVLTWVLPAQSVPISIATVDCNRNRVK
PTGAIHPFILPKPTAKELNKTSKRPEPILVSCNPPNNEPSSASLTPTSQL
PIKERLKAIIHSNNNRRSFSTPPKAAKAKDRSRDEDCMERRRAAASRYRN
KMRNEHKDLIKQNAQLQQENQELHERISRLEKELQQHRSHSSLAGGLRRR
PIQPPVMDPQSEQEYAFLAQMMEQYARRRLQQQFDQQLHEINLKMDRQRQ
LLEQERYRQRQQELQVQREAEEDYESNGNNLNQQYDQYDNAEAEASYGSP
MEAVSDLQSPPLYLPRLPNLPPLPSLPNRPSLGNSPNRNSVLRERIPFAV
GPSDARFFDNPNDPSGELDSRALEDYEEYAPIEPTTEVATTASKTKIDTP
VPAPVPVEPPKLLDAANTNFHRINPQSAAAAAVAGVNIPQSKEQPPHELN
ALINKLQKQSKAPSHLTLVNGGDSSQEQIVLRQHLGMNSEMGVYIVALIA
GVSAAVTVGLLALGVTWFHNRHKAAADVEYPAYGVTGPNKDVSPSGDRKL
AQSAQMYHYQHQKQQIIAMENQATDGSCGMSDVESDDDNEEGDYTVYECP
GLAPTGEMEVKNPLFLDETPATPSNNLSSQTAGAANAAAATNNNITQATP
QQPATLKKGTVKPNINLLNATGTAAAAASAASAASATGGEEPKQKRKSKK
*
BS08253.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44247-PB | 536 | CG44247-PB | 28..536 | 342..850 | 2607 | 99.4 | Plus |
CG44247-PA | 536 | CG44247-PA | 28..536 | 342..850 | 2607 | 99.4 | Plus |
Atf-2-PA | 381 | CG44246-PA | 1..355 | 1..355 | 1797 | 97.7 | Plus |