Clone BS08253 Report

Search the DGRC for BS08253

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:82
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptAtf-2-RA
Protein status:BS08253.pep: full length peptide match
Sequenced Size:2585

Clone Sequence Records

BS08253.3prime Sequence

903 bp (727 high quality bases) assembled on 2006-01-10

> BS08253.3prime
ATGGTCTAGAAAGCTTTTACTTCTTGCTCTTGCGCTTCTGCTTGGGCTCC
TCCCCTCCGGTCGCTGAGGCTGCTGATGCGGCTGAAGCTGCTGCTGCTGC
AGTGCCCGTTGCGTTCAGGAGATTTATGTTCGGCTTGACCGTTCCCTTCT
TCAGGGTGGCCGGCTGCTGGGGGGTAGCCTGCGTGATGTTGTTATTGGTC
GCTGCTGCCGCATTGGCAGCTCCAGCGGTTTGGGACGACAGGTTGTTTGA
CGGCGTGGCCGGCGTCTCGTCCAGGAAGAGCGGATTCTTCACCTCCATCT
CACCAGTGGGCGCCAGGCCGGGGCACTCGTACACCGTGTAGTCGCCCTCC
TCGTTGTCGTCGTCGCTCTCCACGTCCGACATGCCGCAGCTACCATCCGT
GGCCTGGTTCTCCATGGCGATGATCTGCTGCTTCTGGTGCTGGTAGTGGT
ACATTTGGGCGCTCTGGGCCAGCTTTCTGTCACCGGACGGCGAGACATCC
TTGTTCGGCCCGGTAACGCCGTAGGCAGGGTATTCCACGTCCGCTGCTGC
CTTGTGTCGATTATGGAACCAAGTTACTCCGAGGGCAAGAAGCCCAACGG
TCACCGCTGCACTAACCCCCGCTATTAGGGCCACTATGTACACCCCCATC
TCGCTGTTCATGCCCAGGTGCTGGCGCAGCACAATCTGCTCCTGACTGGA
ATCACCTCCGTTGACCAGCGTCAAATGAGAGGGCGCTTTGCTTTGCTTTT
GCAGCTTGTTGATCAGTGCGTTAAGTTCATGGGGTGGTTGTTCTTTGCTC
TGGGGAATATTCACTCCCGCCACGGCTGCGGCGGCGGCGGACTGGGGATT
GATGCGGTGGAAGTTGGTGTTGGCGGCGTCAAGCAGTTTGGGCGGCTCAA
CGG

BS08253.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG30420-PB 1611 Atf-2-RB 725..1611 903..17 4435 100 Minus
CG30420-PA 2553 Atf-2-RA 1667..2553 903..17 4435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG44247-RB 3629 CG44247-RB 1238..2124 903..17 4435 100 Minus
CG44247-RA 2696 CG44247-RA 1238..2124 903..17 4435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24879163..24879716 570..17 2770 100 Minus
2R 25286936 2R 24878769..24879104 903..568 1680 100 Minus
Blast to na_te.dros performed 2015-01-31 15:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1046..1119 457..382 130 70.1 Minus

BS08253.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:36 Download gff for BS08253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30420-PB 725..1611 17..903 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:50 Download gff for BS08253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30420-PA 1667..2553 17..903 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:15:23 Download gff for BS08253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG44247-RA 1238..2127 13..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:36:05 Download gff for BS08253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG44247-RA 1238..2127 13..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:36:05 Download gff for BS08253.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24878769..24879102 570..903 100 -> Minus
2R 24879164..24879719 13..569 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:15:23 Download gff for BS08253.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20766292..20766625 570..903 100 -> Minus
arm_2R 20766687..20767242 13..569 99   Minus

BS08253.5prime Sequence

910 bp (822 high quality bases) assembled on 2006-01-10

> BS08253.5prime
GAAGTTATCAGTCGACATGGACACCGCCGGAGACATGGATCACCTGGCCA
GTGTGTCCTTCGGCGACTTTGAGACAAAATCCCCAGAGGGCGACGTATCC
TGCTATCAGAACTTTCGGGCACAGACGGAACATGTTTCGCTAGACATTTC
TCTCGGGCAGAAGTCAGACACTCTATTTGCCGCCGACCAAACGCCCACGC
CTACGCGACTCATCAAGAACTGCGACGAGGTGGGTCTCTTCGAGGACCTG
CAGCACGTAAATCCATTTGACATTGGATTCCAGCAAGCAGCGGAGCGAAA
TGTCAGCGGCACTCCGAGTCGCCCAGAGGCTCGACCCAATGACGGTGAGT
CCCTGCACACGCCCCAGGTGTATCCCGTCGAGGCCCCCACCGTGGTATCA
GTTCCGTCTGAAAATCAGGTCCCACAAAGTGTCAGCTGCGGCGATATGGA
TGTGGACCAGCTTCTGGCCACGACAGTTACCTCGCCTTCCAAAGCCAGTC
AAGATGGTCCGCCGCCGCTGCAGTTGATCCAGCCCCAGGTCCTAACATGG
GTGCTGCCTGCGCAGTCAGTTCCCATTTCCATCGCTACAGTTGATTGTAA
CAGAAACAGGGTGAAGCCGACTGGTGCCATTCATCCCTTCATACTGCCGA
AACCCACTGCGAAAGAATTAAACAAGACCAGTAAAAGACCCGAGCCTATT
TTGGTCAGTTGCAACCCACCTAATAACGAGCCCAGTAGCGCCAGTCTGAC
GCCCACCTCACAGCTGCCCATCAAGGAGCGATTGAAGGCCATTATCCACA
GCAATAATAACAGACGAAGTTTCTCCACACCGCCCAGGGCTGCGAAAGCA
AAAGATCGCAGTCGGGACGAGGATTGTATGGAGCGACGAAGAGCAGCAGC
CTCTCGTTAC

BS08253.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG30420-PA 2553 Atf-2-RA 1..894 17..910 4420 99.7 Plus
CG30420-PC 1146 Atf-2-RC 1..894 17..910 4420 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
Atf-2-RA 1349 CG44246-RA 100..996 14..910 4455 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24870207..24871103 14..910 4455 99.8 Plus
Blast to na_te.dros performed on 2015-02-02 09:54:58 has no hits.

BS08253.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:37 Download gff for BS08253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30420-PC 1..894 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:52 Download gff for BS08253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30420-PC 1..894 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:25:39 Download gff for BS08253.5prime
Subject Subject Range Query Range Percent Splice Strand
Atf-2-RA 97..996 8..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:35:03 Download gff for BS08253.5prime
Subject Subject Range Query Range Percent Splice Strand
Atf-2-RA 97..996 8..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:35:03 Download gff for BS08253.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24870204..24871103 8..910 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:25:39 Download gff for BS08253.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20757727..20758626 8..910 99   Plus

BS08253.complete Sequence

2585 bp assembled on 2008-08-15

GenBank Submission: KX806430

> BS08253.complete
GAAGTTATCAGTCGACATGGACACCGCCGGAGACATGGATCACCTGGCCA
GTGTGTCCTTCGGCGACTTTGAGACAAAATCCCCAGAGGGCGACGTATCC
TGCTATCAGAACTTTCGGGCACAGACGGAACATGTTTCGCTAGACATTTC
TCTCGGGCAGAAGTCAGACACTCTATTTGCCGCCGACCAAACGCCCACGC
CTACGCGACTCATCAAGAACTGCGACGAGGTGGGTCTCTTCGAGGACCTG
CAGCACGTAAATCCATTTGACATTGGATTCCAGCAAGCAGCGGAGCGAAA
TGTCAGCGGCACTCCGAGTCGCCCAGAGGCTCGACCCAATGACGGTGAGT
CCCTGCACACGCCCCAGGTGTATCCCGTCGAGGCCCCCACCGTGGTATCA
GTTCCGTCTGAAAATCAGGTCCCACAAAGTGTCAGCTGCGGCGATATGGA
TGTGGACCAGCTTCTGGCCACGACAGTTACCTCGCCTTCCAAAGCCAGTC
AAGATGGTCCGCCGCCGCTGCAGTTGATCCAGCCCCAGGTCCTAACATGG
GTGCTGCCTGCGCAGTCAGTTCCCATTTCCATCGCTACAGTTGATTGTAA
CAGAAACAGGGTGAAGCCGACTGGTGCCATTCATCCCTTCATACTGCCGA
AACCCACTGCGAAAGAATTAAACAAGACCAGTAAAAGACCCGAGCCTATT
TTGGTCAGTTGCAACCCACCTAATAACGAGCCCAGTAGCGCCAGTCTGAC
GCCCACCTCACAGCTGCCCATCAAGGAGCGATTGAAGGCCATTATCCACA
GCAATAATAACAGACGAAGTTTCTCCACACCGCCCAAGGCTGCGAAAGCA
AAGGATCGCAGTCGGGACGAGGATTGTATGGAGCGACGAAGAGCAGCAGC
CTCTCGTTACCGTAACAAGATGCGAAACGAGCATAAGGACCTCATCAAAC
AGAACGCCCAGCTGCAGCAGGAGAATCAAGAACTGCACGAAAGAATTTCC
AGATTAGAAAAGGAACTGCAGCAGCACAGGAGTCACAGCAGCTTAGCTGG
CGGATTGCGCCGCCGACCCATTCAGCCGCCTGTGATGGATCCGCAGAGTG
AGCAAGAGTATGCTTTTCTGGCCCAGATGATGGAGCAGTATGCCCGCCGT
CGGCTGCAGCAGCAGTTCGACCAACAGCTGCACGAAATCAACCTGAAGAT
GGATCGTCAGCGGCAGCTCTTGGAGCAGGAGCGGTACCGCCAGCGGCAGC
AGGAGCTCCAGGTACAGCGCGAGGCGGAGGAGGACTACGAGTCCAACGGA
AACAACCTGAACCAGCAGTACGACCAGTACGACAACGCGGAGGCAGAGGC
CAGCTACGGCAGTCCGATGGAGGCAGTCTCTGATCTCCAAAGTCCTCCAT
TGTACCTGCCTCGCCTGCCCAACCTACCACCCTTGCCCAGCCTTCCGAAT
CGGCCCAGCCTGGGCAACTCCCCGAACAGGAACAGTGTGCTCCGCGAACG
GATTCCCTTTGCTGTAGGTCCCAGCGACGCTCGCTTCTTTGACAACCCGA
ACGACCCTTCGGGGGAGCTGGATTCCCGGGCGCTGGAGGACTACGAGGAG
TATGCTCCCATTGAGCCCACAACCGAAGTAGCCACCACCGCCAGTAAGAC
CAAGATCGATACGCCAGTACCGGCTCCCGTGCCCGTTGAGCCGCCCAAAC
TGCTTGACGCCGCCAACACCAACTTCCACCGCATCAATCCCCAGTCCGCC
GCCGCCGCAGCCGTGGCGGGAGTGAATATTCCCCAGAGCAAAGAACAACC
ACCCCATGAACTTAACGCACTGATCAACAAGCTGCAAAAGCAAAGCAAAG
CGCCCTCTCATTTGACGCTGGTCAACGGAGGTGATTCCAGTCAGGAGCAG
ATTGTGCTGCGCCAGCACCTGGGCATGAACAGCGAGATGGGGGTGTACAT
AGTGGCCCTAATAGCGGGGGTTAGTGCAGCGGTGACCGTTGGGCTTCTTG
CCCTCGGAGTAACTTGGTTCCATAATCGACACAAGGCAGCAGCGGACGTG
GAATACCCTGCCTACGGCGTTACCGGGCCGAACAAGGATGTCTCGCCGTC
CGGTGACAGAAAGCTGGCCCAGAGCGCCCAAATGTACCACTACCAGCACC
AGAAGCAGCAGATCATCGCCATGGAGAACCAGGCCACGGATGGTAGCTGC
GGCATGTCGGACGTGGAGAGCGACGACGACAACGAGGAGGGCGACTACAC
GGTGTACGAGTGCCCCGGCCTGGCGCCCACTGGTGAGATGGAGGTGAAGA
ATCCGCTCTTCCTGGACGAGACGCCGGCCACGCCGTCAAACAACCTGTCG
TCCCAAACCGCTGGAGCTGCCAATGCGGCAGCAGCGACCAATAACAACAT
CACGCAGGCTACCCCCCAGCAGCCGGCCACCCTGAAGAAGGGAACGGTCA
AGCCGAACATAAATCTCCTGAACGCAACGGGCACTGCAGCAGCAGCAGCT
TCAGCCGCATCAGCAGCCTCAGCGACCGGAGGGGAGGAGCCCAAGCAGAA
GCGCAAGAGCAAGAAGTAAAAGCTTTCTAGACCAT

BS08253.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG44247-RB 1611 CG44247-PB 94..1611 1052..2569 7590 100 Plus
CG44247-RA 1611 CG44247-PA 94..1611 1052..2569 7590 100 Plus
Atf-2-RA 1146 CG44246-PA 1..1036 17..1052 5180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG44247-RB 3629 CG44247-RB 607..2124 1052..2569 7590 100 Plus
CG44247-RA 2696 CG44247-RA 607..2124 1052..2569 7590 100 Plus
Atf-2-RA 1349 CG44246-RA 100..1138 14..1052 5195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24870207..24871246 14..1053 5200 100 Plus
2R 25286936 2R 24878138..24879104 1052..2018 4835 100 Plus
2R 25286936 2R 24879163..24879716 2016..2569 2770 100 Plus
Blast to na_te.dros performed 2014-11-27 16:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1046..1119 2129..2204 130 70.1 Plus
Dmir\worf 4174 Dmir\worf WORF 4174bp Derived from AY144572. 639..744 1659..1764 124 61.1 Plus

BS08253.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:25:37 Download gff for BS08253.complete
Subject Subject Range Query Range Percent Splice Strand
Atf-2-RA 138..2699 8..2573 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:15 Download gff for BS08253.complete
Subject Subject Range Query Range Percent Splice Strand
CG44247-RA 607..2122 1052..2567 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:39 Download gff for BS08253.complete
Subject Subject Range Query Range Percent Splice Strand
Atf-2-RA 144..2694 17..2567 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:11 Download gff for BS08253.complete
Subject Subject Range Query Range Percent Splice Strand
CG44247-RA 607..2122 1052..2567 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:11 Download gff for BS08253.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24870210..24871245 17..1052 100 -> Plus
2R 24878139..24879102 1053..2016 100 -> Plus
2R 24879164..24879714 2017..2567 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:15 Download gff for BS08253.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20757733..20758768 17..1052 100 -> Plus
arm_2R 20765662..20766625 1053..2016 100 -> Plus
arm_2R 20766687..20767237 2017..2567 100   Plus

BS08253.pep Sequence

Translation from 16 to 2568

> BS08253.pep
MDTAGDMDHLASVSFGDFETKSPEGDVSCYQNFRAQTEHVSLDISLGQKS
DTLFAADQTPTPTRLIKNCDEVGLFEDLQHVNPFDIGFQQAAERNVSGTP
SRPEARPNDGESLHTPQVYPVEAPTVVSVPSENQVPQSVSCGDMDVDQLL
ATTVTSPSKASQDGPPPLQLIQPQVLTWVLPAQSVPISIATVDCNRNRVK
PTGAIHPFILPKPTAKELNKTSKRPEPILVSCNPPNNEPSSASLTPTSQL
PIKERLKAIIHSNNNRRSFSTPPKAAKAKDRSRDEDCMERRRAAASRYRN
KMRNEHKDLIKQNAQLQQENQELHERISRLEKELQQHRSHSSLAGGLRRR
PIQPPVMDPQSEQEYAFLAQMMEQYARRRLQQQFDQQLHEINLKMDRQRQ
LLEQERYRQRQQELQVQREAEEDYESNGNNLNQQYDQYDNAEAEASYGSP
MEAVSDLQSPPLYLPRLPNLPPLPSLPNRPSLGNSPNRNSVLRERIPFAV
GPSDARFFDNPNDPSGELDSRALEDYEEYAPIEPTTEVATTASKTKIDTP
VPAPVPVEPPKLLDAANTNFHRINPQSAAAAAVAGVNIPQSKEQPPHELN
ALINKLQKQSKAPSHLTLVNGGDSSQEQIVLRQHLGMNSEMGVYIVALIA
GVSAAVTVGLLALGVTWFHNRHKAAADVEYPAYGVTGPNKDVSPSGDRKL
AQSAQMYHYQHQKQQIIAMENQATDGSCGMSDVESDDDNEEGDYTVYECP
GLAPTGEMEVKNPLFLDETPATPSNNLSSQTAGAANAAAATNNNITQATP
QQPATLKKGTVKPNINLLNATGTAAAAASAASAASATGGEEPKQKRKSKK
*

BS08253.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG44247-PB 536 CG44247-PB 28..536 342..850 2607 99.4 Plus
CG44247-PA 536 CG44247-PA 28..536 342..850 2607 99.4 Plus
Atf-2-PA 381 CG44246-PA 1..355 1..355 1797 97.7 Plus