Clone Sequence Records
BS08255.3prime Sequence
883 bp (795 high quality bases) assembled on 2006-01-10
> BS08255.3prime
ATGGTCTAGAAAGCTTTTAGGGTCCATAGGCATCCGAACCGAAGTCAAAC
AGCCGATCGATGCCCTCGTTCGCGTTCAGCGCATACGGATAGTCATTGTC
GTCCGGCGGATTGATGGACACAAAGGCGATATCGTTGCTGAAGTAGTCCG
AGCCAATGTCGTTGAAGAGAGCATCGAGGCCCTGCAGCGTGACACTGCTG
CTGTTGCTGTTGGCATCGCAGTCAGCCACGCCGGGCGGCAGGCTGTTGCG
GTCATGGCTGTACGGCTGATGGGGATCAGCGTTGGCGCCAGCGCCAGCGA
TGCTGCCATAGCCGCCGCCGCCGCCACCACCGCCGCTGCTACTGCCGTTG
TTGCTCTCCGCGACGGCAGCGAATTGCATCTGCAGTGAGCTTGCTGCGGC
CGATCGCGATGTGGCAGCTGTCGTATCTGCTGTTGCAGATGTTGTGGTTG
CGCCTTCCATTGCACAATTATACATGGGCACATCGCTGCGTCGCTGACTG
CTGCCGTAGCCTATTGTGGGTGGTTGGGATTTGCTGTTGTTGCTGCTGCT
ATGGTTGCTGTGGTTGCTATGATTGCTGTGGTTTCTGTTGTTATGACTAT
TAAGCGTAGTGGTTGCTGTTGTTGAGCTGCCTGCGGCAATTGCTGCGGCT
GCTGCCTCCCGACGCCGCTTGGTGGGCGTTGGAGGCGAGGATTCTGTTAA
GCTGCTGAACAGCTCCTGGATGGAGGGCTGCTGGTGCTGCTGGAACTGAT
GGGTCCGGACCACAGGATTCGTCAGTGTCGGAACCAGCTGGTTCAGCTCC
ACGTCCACATCGTCCTCCTCCGGCTGCTGTAGCCACTGTTGTTGTTGCTG
CTGCTGCTGCTGGTTCAGATTATGATGCTGGCC
BS08255.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6376-PB | 2418 | E2f-RB | 1552..2418 | 883..17 | 4310 | 99.8 | Minus |
| CG6376-PC | 2418 | E2f-RC | 1552..2418 | 883..17 | 4310 | 99.8 | Minus |
| CG6376-PA | 2418 | E2f-RA | 1552..2418 | 883..17 | 4310 | 99.8 | Minus |
| CG32466-PB | 2079 | rn-RB | 1454..1482 | 864..836 | 145 | 100 | Minus |
| CG32466-PA | 2841 | rn-RA | 2216..2244 | 864..836 | 145 | 100 | Minus |
| CG32466-PB | 2079 | rn-RB | 1578..1605 | 863..836 | 140 | 100 | Minus |
| CG32466-PA | 2841 | rn-RA | 2340..2367 | 863..836 | 140 | 100 | Minus |
| CG13921-PB | 3363 | CG13921-RB | 12..39 | 864..837 | 140 | 100 | Minus |
| CG30089-PA | 3792 | CG30089-RA | 1907..1934 | 863..836 | 140 | 100 | Minus |
| CG13921-PA | 3945 | CG13921-RA | 12..39 | 864..837 | 140 | 100 | Minus |
| CG32560-PA | 4671 | CG32560-RA | 3550..3577 | 862..835 | 140 | 100 | Minus |
| CG14023-PA | 6804 | CG14023-RA | 2623..2650 | 862..835 | 140 | 100 | Minus |
| CG7368-PB | 1593 | CG7368-RB | 324..350 | 863..837 | 135 | 100 | Minus |
| CG7368-PB | 1593 | CG7368-RB | 1444..1470 | 862..836 | 135 | 100 | Minus |
| CG32132-PA | 696 | CG32132-RA | 141..167 | 863..837 | 135 | 100 | Minus |
| CG4710-PB | 750 | smi21F-RB | 35..61 | 863..837 | 135 | 100 | Minus |
| CG11294-PA | 786 | CG11294-RA | 712..738 | 862..836 | 135 | 100 | Minus |
| CG5466-PA | 1785 | CG5466-RA | 922..948 | 862..836 | 135 | 100 | Minus |
| CG5053-PA | 1824 | CG5053-RA | 253..279 | 862..836 | 135 | 100 | Minus |
| CG1775-PB | 2094 | Med-RB | 859..885 | 862..836 | 135 | 100 | Minus |
| CG32532-PA | 2211 | CG32532-RA | 334..360 | 862..836 | 135 | 100 | Minus |
| CG1775-PA | 2316 | Med-RA | 1081..1107 | 862..836 | 135 | 100 | Minus |
| CG32062-PB | 2550 | CG32062-RB | 124..150 | 862..836 | 135 | 100 | Minus |
| CG32062-PD | 2646 | CG32062-RD | 124..150 | 862..836 | 135 | 100 | Minus |
| CG5166-PA | 2667 | Atx2-RA | 1486..1512 | 862..836 | 135 | 100 | Minus |
| CG10082-PA | 2709 | CG10082-RA | 145..171 | 862..836 | 135 | 100 | Minus |
| CG32778-PA | 2829 | CG32778-RA | 1531..1557 | 862..836 | 135 | 100 | Minus |
| CG5166-PC | 3072 | Atx2-RC | 1486..1512 | 862..836 | 135 | 100 | Minus |
| CG5166-PB | 3255 | Atx2-RB | 1669..1695 | 862..836 | 135 | 100 | Minus |
| CG16902-PC | 4557 | Hr4-RC | 1675..1701 | 862..836 | 135 | 100 | Minus |
| CG10732-PA | 4974 | CG10732-RA | 4060..4086 | 862..836 | 135 | 100 | Minus |
| CG3696-PB | 6456 | kis-RB | 3550..3576 | 862..836 | 135 | 100 | Minus |
| CG32133-PA | 6885 | CG32133-RA | 2647..2673 | 862..836 | 135 | 100 | Minus |
| CG4013-PA | 10815 | Smr-RA | 673..699 | 862..836 | 135 | 100 | Minus |
| CG4013-PB | 10815 | Smr-RB | 673..699 | 862..836 | 135 | 100 | Minus |
| CG4013-PC | 10815 | Smr-RC | 673..699 | 862..836 | 135 | 100 | Minus |
| CG3696-PA | 15969 | kis-RA | 13063..13089 | 862..836 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:16:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E2f1-RF | 4653 | CG6376-RF | 2522..3388 | 883..17 | 4320 | 99.9 | Minus |
| E2f1-RE | 4234 | CG6376-RE | 2103..2969 | 883..17 | 4320 | 99.9 | Minus |
| E2f1-RD | 3581 | CG6376-RD | 2514..3380 | 883..17 | 4320 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:16:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21622812..21623550 | 145..883 | 3680 | 99.9 | Plus |
| 3R | 32079331 | 3R | 21621569..21621696 | 17..144 | 640 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 23:16:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..7028 | 655..408 | 283 | 61.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6895 | 654..483 | 265 | 67.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2938 | 880..301 | 236 | 54.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2773..2925 | 669..520 | 199 | 63.5 | Minus |
BS08255.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:38 Download gff for
BS08255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E2f-PB | 1552..2418 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:54 Download gff for
BS08255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6376-PA | 1552..2418 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:29:49 Download gff for
BS08255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E2f-RC | 2264..3133 | 14..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:29:35 Download gff for
BS08255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E2f1-RD | 2514..3383 | 14..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:29:35 Download gff for
BS08255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21621566..21621696 | 14..144 | 99 | <- | Plus |
| 3R | 21622812..21623550 | 145..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:29:49 Download gff for
BS08255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17447288..17447418 | 14..144 | 99 | <- | Plus |
| arm_3R | 17448534..17449272 | 145..883 | 99 | | Plus |
BS08255.5prime Sequence
844 bp (782 high quality bases) assembled on 2006-01-10
> BS08255.5prime
GAAGTTATCAGTCGACATGTCCAAGTTCTTTGTGAATGTTGCCCCCATCA
ACAACAGCAACAGCAGCAGTAGCCACACAACCACCAGCAGCAACACCCAG
CGCCACCAGCAGCACCAACAACACTATGGCGGGAGCGGGACAACCGGCCA
CACGATGGTGGCCCGCAGACTCAACTACGATCTGCACGGCGGCACCACCA
GCATCAACAACAACAACAACATTGTGATCAAGAACGAGTCCGTCGACTTG
GACTACGATCACGTCCTGAGCAGCAGCGACAGCAACAGCAACGGCGGCGT
GGCAGCCCACCTGCGGGATCATGTCTACATCAGTCTGGACAAGGGGCACA
ACACGGGGGCAGTGGCAACAGCAGCGGCGGCGGCAACGGCGGGCCACACG
CAGCAGCAACTGCAGCAGCAGCACCACCACCAAAATCAGCAGCAACGCAA
GGCGACCGGCAAATCCAACGATATCACAAATTATTACAAGGTCAAACGTC
GGCCACACGCCGTCAGCGATGAGATTCACCCGAAGAAGCAGGCCAAGCAG
AGCGCCCACCACCAGACGGTGTATCAGAAGCATACGGCTAGCAGTGCGCC
CCAGCAGCTCCGGCACAGCCACCACCAGCTGCGCCACGACGCGGATGCCG
AACTGGACGAGGATGTGGTGGAGCGGGTGGCCAAGCCGGCATCGCATCAC
CCCTTTTCGCTGTCGACGCCCCAGCAACAGTTGGCTGCGTCGGTGGCCAG
CAGTTCCTCGAGCGGAGATCGCAATCGGGCGGACACCTCGCTGGGAATAC
TGACCAAAAAGTTTGTGGACCTGCTGCAGGAGTCACCGGATGGC
BS08255.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6376-PB | 2418 | E2f-RB | 1..828 | 17..844 | 4140 | 100 | Plus |
| CG6376-PC | 2418 | E2f-RC | 1..828 | 17..844 | 4140 | 100 | Plus |
| CG6376-PA | 2418 | E2f-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
| CG32180-PA | 2490 | Eip74EF-RA | 920..949 | 399..428 | 150 | 100 | Plus |
| CG32180-PC | 2607 | Eip74EF-RC | 1037..1066 | 399..428 | 150 | 100 | Plus |
| CG32180-PB | 2652 | Eip74EF-RB | 1082..1111 | 399..428 | 150 | 100 | Plus |
| CG32180-PD | 2652 | Eip74EF-RD | 1082..1111 | 399..428 | 150 | 100 | Plus |
| CG33975-PA | 1566 | CG33975-RA | 1158..1190 | 400..432 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E2f1-RF | 4653 | CG6376-RF | 967..1798 | 13..844 | 4145 | 99.9 | Plus |
| E2f1-RE | 4234 | CG6376-RE | 500..1331 | 13..844 | 4145 | 99.9 | Plus |
| E2f1-RD | 3581 | CG6376-RD | 911..1742 | 13..844 | 4145 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21626020..21626501 | 494..13 | 2395 | 99.8 | Minus |
| 3R | 32079331 | 3R | 21625540..21625895 | 844..489 | 1780 | 100 | Minus |
Blast to na_te.dros performed 2015-02-09 10:03:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2373..2619 | 46..298 | 278 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2538 | 191..446 | 230 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6968 | 187..434 | 219 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2643..3031 | 46..417 | 154 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6899 | 105..298 | 154 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1500..1587 | 209..295 | 122 | 61.4 | Plus |
BS08255.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:39 Download gff for
BS08255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E2f-PB | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:35:55 Download gff for
BS08255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6376-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:26:11 Download gff for
BS08255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E2f-RC | 706..1540 | 9..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:55:08 Download gff for
BS08255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E2f1-RD | 908..1742 | 9..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:55:08 Download gff for
BS08255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21625540..21625893 | 491..844 | 100 | <- | Minus |
| 3R | 21626024..21626504 | 9..490 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:26:11 Download gff for
BS08255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17451262..17451615 | 491..844 | 100 | <- | Minus |
| arm_3R | 17451746..17452226 | 9..490 | 99 | | Minus |
BS08255.complete Sequence
2450 bp assembled on 2008-08-15
GenBank Submission: KX801654
> BS08255.complete
GAAGTTATCAGTCGACATGTCCAAGTTCTTTGTGAATGTTGCCCCCATCA
ACAACAGCAACAGCAGCAGTAGCCACACAACCACCAGCAGCAACACCCAG
CGCCACCAGCAGCACCAACAACACTATGGCGGGAGCGGGACAACCGGCCA
CACGATGGTGGCCCGCAGACTCAACTACGATCTGCACGGCGGCACCACCA
GCATCAACAACAACAACAACATTGTGATCAAGAACGAGTCCGTCGACTTG
GACTACGATCACGTCCTGAGCAGCAGCGACAGCAACAGCAACGGCGGCGT
GGCAGCCCACCTGCGGGATCATGTCTACATCAGTCTGGACAAGGGGCACA
ACACGGGGGCAGTGGCAACAGCAGCGGCGGCGGCAACGGCGGGCCACACG
CAGCAGCAACTGCAGCAGCAGCACCACCACCAAAATCAGCAGCAACGCAA
GGCGACCGGCAAATCCAACGATATCACAAATTATTACAAGGTCAAACGTC
GGCCACACGCCGTCAGCGATGAGATTCACCCGAAGAAGCAGGCCAAGCAG
AGCGCCCACCACCAGACGGTGTATCAGAAGCATACGGCTAGCAGTGCGCC
CCAGCAGCTCCGGCACAGCCACCACCAGCTGCGCCACGACGCGGATGCCG
AACTGGACGAGGATGTGGTGGAGCGGGTGGCCAAGCCGGCATCGCATCAC
CCCTTTTCGCTGTCGACGCCCCAGCAACAGTTGGCTGCGTCGGTGGCCAG
CAGTTCCTCGAGCGGAGATCGCAATCGGGCGGACACCTCGCTGGGAATAC
TGACCAAAAAGTTTGTGGACCTGCTGCAGGAGTCACCGGATGGCGTGGTG
GATCTGAACGAGGCCTCCAATCGATTGCACGTTCAGAAGCGGCGCATCTA
CGACATTACCAATGTCCTCGAAGGCATTAACATCCTGGAGAAGAAGTCGA
AGAACAACATCCAGTGGCGCTGCGGGCAGTCGATGGTCAGCCAGGAGCGT
TCCCGTCACATCGAAGCGGATTCGTTGCGGCTGGAGCAACAGGAGAACGA
GCTGAACAAGGCCATCGATCTGATGCGCGAGAATCTGGCTGAGATCTCCC
AGGAGGTGGAGAACTCCGGCGGCATGGCCTACGTCACGCAGAACGACCTG
CTCAACGTGGATCTCTTCAAAGATCAGATCGTTATCGTGATCAAGGCGCC
GCCAGAGGCTAAGCTTGTGCTGCCCAACACAAAATTGCCGCGCGAGATTT
ACGTGAAGGCGGAGAATAGCGGGGAGATCAACGTCTTCCTCTGCCATGAC
ACCTCACCGGAAAATTCGCCAATCGCGCCGGGCGCCGGCTACGTTGGAGC
ACCCGGTGCAGGATGCGTCCGTACGGCCACCTCCACACGACTGCATCCGT
TGACCAACCAGCGACTGAACGATCCGCTCTTCAACAATATCGATGCCATG
AGCACCAAGGGATTATTTCAAACGCCCTACCGCTCGGCTCGCAACCTCAG
CAAATCGATTGAGGAAGCCGCCAAGCAGTCCCAGCCTGAATATAATAACA
TTTGTGATATTGCGATGGGCCAGCATCATAATCTGAACCAGCAGCAGCAG
CAGCAACAACAACAGTTGCTACAGCAGCCGGAGGAGGACGATGTGGACGT
GGAGCTGAACCAGCTGGTTCCGACACTGACGAATCCTGTGGTCCGGACCC
ATCAGTTCCAGCAGCACCAGCAGCCCTCCATCCAGGAGCTGTTCAGCAGC
TTAACAGAATCCTCGCCTCCAACGCCCACCAAGCGGCGTCGGGAGGCAGC
AGCCGCAGCAATTGCCGCAGGCAGCTCAACAACAGCAACCACTACGCTTA
ATAGTCATAACAACAGAAACCACAGCAATCATAGCAACCACAGCAACCAT
AGCAGCAGCAACAACAGCAAATCCCAACCACCCACAATAGGCTACGGCAG
CAGTCAGCGACGCAGCGATGTGCCCATGTATAATTGTGCAATGGAAGGCG
CAACCACAACATCTGCAACAGCAGATACGACAGCTGCCACATCGCGATCG
GCCGCAGCAAGCTCACTGCAGATGCAATTCGCTGCCGTCGCGGAGAGCAA
CAACGGCAGTAGCAGCGGCGGTGGTGGCGGCGGCGGCGGCTATGGCAGCA
TCGCTGGCGCTGGCGCCAACGCTGATCCCCATCAGCCGTACAGCCATGAC
CGCAACAGCCTGCCGCCCGGCGTGGCTGACTGCGATGCCAACAGCAACAG
CAGCAGTGTCACGCTGCAGGGCCTCGATGCTCTCTTCAACGACATTGGCT
CGGACTACTTCAGCAACGATATCGCCTTTGTGTCCATCAATCCGCCGGAC
GACAATGACTATCCGTATGCGCTGAACGCGAACGAGGGCATCGATCGGCT
GTTTGACTTCGGTTCGGATGCCTATGGACCCTAAAAGCTTTCTAGACCAT
BS08255.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:48:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E2f1-RF | 2418 | CG6376-PF | 1..2418 | 17..2434 | 12090 | 100 | Plus |
| E2f1-RA | 2418 | CG6376-PA | 1..2418 | 17..2434 | 12090 | 100 | Plus |
| E2f1-RC | 2418 | CG6376-PC | 1..2418 | 17..2434 | 12090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:48:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E2f1-RF | 4653 | CG6376-RF | 967..3388 | 13..2434 | 12095 | 100 | Plus |
| E2f1-RA | 3913 | CG6376-RA | 1291..3712 | 13..2434 | 12095 | 100 | Plus |
| E2f1-RC | 4778 | CG6376-RC | 1092..3513 | 13..2434 | 12095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:48:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21622812..21623651 | 2306..1467 | 4200 | 100 | Minus |
| 3R | 32079331 | 3R | 21625165..21625895 | 1219..489 | 3655 | 100 | Minus |
| 3R | 32079331 | 3R | 21626020..21626501 | 494..13 | 2395 | 99.8 | Minus |
| 3R | 32079331 | 3R | 21623839..21624086 | 1466..1219 | 1240 | 100 | Minus |
| 3R | 32079331 | 3R | 21621569..21621696 | 2434..2307 | 640 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 19:48:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..7028 | 1796..2043 | 283 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2373..2619 | 46..298 | 278 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6895 | 1797..1968 | 265 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2938 | 1571..2150 | 236 | 54.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6968 | 187..434 | 219 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2773..2925 | 1782..1931 | 199 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2643..3031 | 46..417 | 154 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6899 | 105..298 | 154 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1500..1587 | 209..295 | 122 | 61.4 | Plus |
BS08255.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:28:25 Download gff for
BS08255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E2f-RA | 1237..3664 | 9..2437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:14 Download gff for
BS08255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E2f-RB | 539..2954 | 17..2432 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:50 Download gff for
BS08255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E2f-RA | 1244..3659 | 17..2432 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:46 Download gff for
BS08255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E2f1-RC | 1096..3511 | 17..2432 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:46 Download gff for
BS08255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21621571..21621696 | 2307..2432 | 100 | <- | Minus |
| 3R | 21622812..21623651 | 1467..2306 | 100 | <- | Minus |
| 3R | 21623839..21624085 | 1220..1466 | 100 | <- | Minus |
| 3R | 21625165..21625893 | 491..1219 | 100 | <- | Minus |
| 3R | 21626024..21626497 | 17..490 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:14 Download gff for
BS08255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17447293..17447418 | 2307..2432 | 100 | <- | Minus |
| arm_3R | 17448534..17449373 | 1467..2306 | 100 | <- | Minus |
| arm_3R | 17449561..17449807 | 1220..1466 | 100 | <- | Minus |
| arm_3R | 17450887..17451615 | 491..1219 | 100 | <- | Minus |
| arm_3R | 17451746..17452219 | 17..490 | 100 | | Minus |
BS08255.pep Sequence
Translation from 16 to 2433
> BS08255.pep
MSKFFVNVAPINNSNSSSSHTTTSSNTQRHQQHQQHYGGSGTTGHTMVAR
RLNYDLHGGTTSINNNNNIVIKNESVDLDYDHVLSSSDSNSNGGVAAHLR
DHVYISLDKGHNTGAVATAAAAATAGHTQQQLQQQHHHQNQQQRKATGKS
NDITNYYKVKRRPHAVSDEIHPKKQAKQSAHHQTVYQKHTASSAPQQLRH
SHHQLRHDADAELDEDVVERVAKPASHHPFSLSTPQQQLAASVASSSSSG
DRNRADTSLGILTKKFVDLLQESPDGVVDLNEASNRLHVQKRRIYDITNV
LEGINILEKKSKNNIQWRCGQSMVSQERSRHIEADSLRLEQQENELNKAI
DLMRENLAEISQEVENSGGMAYVTQNDLLNVDLFKDQIVIVIKAPPEAKL
VLPNTKLPREIYVKAENSGEINVFLCHDTSPENSPIAPGAGYVGAPGAGC
VRTATSTRLHPLTNQRLNDPLFNNIDAMSTKGLFQTPYRSARNLSKSIEE
AAKQSQPEYNNICDIAMGQHHNLNQQQQQQQQQLLQQPEEDDVDVELNQL
VPTLTNPVVRTHQFQQHQQPSIQELFSSLTESSPPTPTKRRREAAAAAIA
AGSSTTATTTLNSHNNRNHSNHSNHSNHSSSNNSKSQPPTIGYGSSQRRS
DVPMYNCAMEGATTTSATADTTAATSRSAAASSLQMQFAAVAESNNGSSS
GGGGGGGGYGSIAGAGANADPHQPYSHDRNSLPPGVADCDANSNSSSVTL
QGLDALFNDIGSDYFSNDIAFVSINPPDDNDYPYALNANEGIDRLFDFGS
DAYGP*
BS08255.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E2f1-PF | 805 | CG6376-PF | 1..805 | 1..805 | 4178 | 100 | Plus |
| E2f1-PA | 805 | CG6376-PA | 1..805 | 1..805 | 4178 | 100 | Plus |
| E2f1-PC | 805 | CG6376-PC | 1..805 | 1..805 | 4178 | 100 | Plus |
| E2f1-PB | 805 | CG6376-PB | 1..805 | 1..805 | 4178 | 100 | Plus |
| E2f1-PE | 821 | CG6376-PE | 1..821 | 1..805 | 4151 | 98.1 | Plus |
