Clone Sequence Records
BS08259.3prime Sequence
392 bp (316 high quality bases) assembled on 2006-01-10
> BS08259.3prime
ATGGTCTAGAAAGCTTCGCTACTGCGGCTGCGGCTGTTGCTGCTGCGGTA
TGAAGACCTGATCGCCCACAATGTGTATGACGTTCTGCATGCCCTGCTGT
TGTGCCGCTTGCTGTTGCTGCTGCTGCCCAGTGCCGCCCCCGCCGCCGCC
CTCATGTTTGATGTATGCCTGTCCACCACCCGCTAATGTTGCTGTCAAGT
GCTGCTGGTGTTGCTGCTGCAGTTGCTGCTGTTGCTGCTGCTGGGGCAGC
ACACCTTGGGCCAGGATGGCCGGCGCCCCCGCGGCCTGCGGTGCATTCGA
TATCACTCTCGTTGGCGTCGTACCAGATGATTGTCCTCCTGCTGATCCTG
CTCCGCCTGCTCCATCACTGCCCACTGTGTTGTCGCCCTCTG
BS08259.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33261-PD | 1560 | Trl-RD | 1187..1560 | 392..19 | 1870 | 100 | Minus |
| CG33261-PC | 1560 | Trl-RC | 1187..1560 | 392..19 | 1870 | 100 | Minus |
| CG33261-PB | 1560 | Trl-RB | 1187..1560 | 392..19 | 1870 | 100 | Minus |
| CG33261-PE | 1560 | Trl-RE | 1187..1560 | 392..19 | 1870 | 100 | Minus |
| CG33261-PG | 1431 | Trl-RG | 1058..1431 | 392..19 | 1870 | 100 | Minus |
| CG33261-PH | 1560 | Trl-RH | 1187..1560 | 392..19 | 1870 | 100 | Minus |
| CG11491-PG | 1992 | br-RG | 1397..1433 | 251..215 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trl-RH | 1911 | CG33261-RH | 1477..1851 | 392..18 | 1875 | 100 | Minus |
| Trl-RE | 2156 | CG33261-RE | 1722..2096 | 392..18 | 1875 | 100 | Minus |
| Trl-RB | 4441 | CG33261-RB | 1543..1917 | 392..18 | 1875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:34:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14752905..14753279 | 18..392 | 1875 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 11:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6860 | 126..18 | 140 | 63.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6841 | 126..16 | 132 | 62.5 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1156 | 122..16 | 123 | 67.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6531..6751 | 248..16 | 118 | 56.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6878 | 126..18 | 116 | 61.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1557..1590 | 48..15 | 107 | 79.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6766 | 49..16 | 107 | 79.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6787 | 49..16 | 107 | 79.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..6808 | 49..16 | 107 | 79.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2387 | 48..16 | 102 | 78.8 | Minus |
BS08259.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:47 Download gff for
BS08259.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33261-PB | 1187..1560 | 19..392 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:05 Download gff for
BS08259.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33261-PD | 1187..1560 | 19..392 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:53:50 Download gff for
BS08259.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RE | 1722..2101 | 12..392 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:54:52 Download gff for
BS08259.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RB | 1543..1922 | 12..392 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:54:52 Download gff for
BS08259.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14752900..14753279 | 12..392 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:53:50 Download gff for
BS08259.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14746000..14746379 | 12..392 | 99 | | Plus |
BS08259.5prime Sequence
857 bp (782 high quality bases) assembled on 2006-01-10
> BS08259.5prime
GAAGTTATCAGTCGACATGTCGCTGCCAATGAATTCGCTGTATTCGCTCA
CCTGGGGCGATTACGGCACCAGCCTCGTATCGGCAATCCAATTGTTGCGC
TGCCATGGCGACCTCGTCGATTGCACGTTGGCCGCCGGCGGGCGGAGTTT
TCCCGCCCACAAGATAGTCCTGTGCGCCGCCTCCCCCTTTCTGCTGGACT
TGCTAAAGAATACACCATGCAAGCATCCAGTGGTTATGTTGGCTGGCGTC
AATGCGAACGATCTGGAGGCGCTGCTGGAGTTTGTGTACCGCGGAGAGGT
GAGCGTGGATCACGCCCAGCTGCCGTCGCTACTGCAGGCTGCCCAGTGCC
TGAACATCCAGGGACTGGCACCGCAGACGGTTACCAAGGACGACTACACC
ACGCACTCGATACAACTGCAGCACATGATTCCACAACATCACGACCAAGA
CCAACTGATTGCCACGATCGCCACGGCTCCACAGCAAACGGTTCATGCCC
AGGTGGTGGAGGACATCCATCATCAGGGCCAGATTCTCCAGGCAACGACC
CAGACCAACGCAGCAGGACAACAGCAGACCATTGTGACAACCGACGCGGC
TAAACATGACCAGGCAGTGATTCAGGCTTTTCTTCCGGCACGCAAACGCA
AACCACGCGTAAAGAAAATGTCACCTACGGCACCGAAAATAAGCAAAGTT
GAAGGAATGGATACGATTATGGGCACACCGACCTCTTCACACGGCTCTGG
ATCCGTGCAGCAGGTGCTTGGCGAAAATGGAGCCGAGGGCCAACTGCTAT
CATCCACACCGATCATCAAGAGCGAAGGACAAAAGGTAGAGACTATTGTG
ACCATGG
BS08259.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33261-PA | 1749 | Trl-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
| CG33261-PD | 1560 | Trl-RD | 1..841 | 17..857 | 4205 | 100 | Plus |
| CG33261-PC | 1560 | Trl-RC | 1..841 | 17..857 | 4205 | 100 | Plus |
| CG33261-PB | 1560 | Trl-RB | 1..841 | 17..857 | 4205 | 100 | Plus |
| CG33261-PE | 1560 | Trl-RE | 1..841 | 17..857 | 4205 | 100 | Plus |
| CG33261-PF | 1749 | Trl-RF | 1..841 | 17..857 | 4205 | 100 | Plus |
| CG33261-PH | 1560 | Trl-RH | 1..841 | 17..857 | 4205 | 100 | Plus |
| CG33261-PI | 1704 | Trl-RI | 1..841 | 17..857 | 4205 | 100 | Plus |
| CG33261-PG | 1431 | Trl-RG | 191..712 | 336..857 | 2610 | 100 | Plus |
| CG33261-PG | 1431 | Trl-RG | 1..192 | 17..208 | 960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trl-RK | 3145 | CG33261-RK | 357..1197 | 17..857 | 4205 | 100 | Plus |
| Trl-RJ | 3814 | CG33261-RJ | 242..1082 | 17..857 | 4205 | 100 | Plus |
| Trl-RI | 3806 | CG33261-RI | 357..1197 | 17..857 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14754085..14754552 | 674..207 | 2340 | 100 | Minus |
| 3L | 28110227 | 3L | 14756904..14757095 | 208..17 | 960 | 100 | Minus |
| 3L | 28110227 | 3L | 14753784..14753966 | 857..675 | 915 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:55:43 has no hits.
BS08259.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:48 Download gff for
BS08259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33261-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:06 Download gff for
BS08259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33261-PD | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:12:13 Download gff for
BS08259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RK | 357..1197 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:00 Download gff for
BS08259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RI | 357..1197 | 17..857 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:00 Download gff for
BS08259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14753784..14753966 | 675..857 | 100 | <- | Minus |
| 3L | 14754085..14754550 | 209..674 | 100 | <- | Minus |
| 3L | 14756904..14757095 | 17..208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:12:13 Download gff for
BS08259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14746884..14747066 | 675..857 | 100 | <- | Minus |
| arm_3L | 14747185..14747650 | 209..674 | 100 | <- | Minus |
| arm_3L | 14750004..14750195 | 17..208 | 100 | | Minus |
BS08259.complete Sequence
1594 bp assembled on 2008-08-15
GenBank Submission: KX800941
> BS08259.complete
GAAGTTATCAGTCGACATGTCGCTGCCAATGAATTCGCTGTATTCGCTCA
CCTGGGGCGATTACGGCACCAGCCTCGTATCGGCAATCCAATTGTTGCGC
TGCCATGGCGACCTCGTCGATTGCACGTTGGCCGCCGGCGGGCGGAGTTT
TCCCGCCCACAAGATAGTCCTGTGCGCCGCCTCCCCCTTTCTGCTGGACT
TGCTAAAGAATACACCATGCAAGCATCCAGTGGTTATGTTGGCTGGCGTC
AATGCGAACGATCTGGAGGCGCTGCTGGAGTTTGTGTACCGCGGAGAGGT
GAGCGTGGATCACGCCCAGCTGCCGTCGCTACTGCAGGCTGCCCAGTGCC
TGAACATCCAGGGACTGGCACCGCAGACGGTTACCAAGGACGACTACACC
ACGCACTCGATACAACTGCAGCACATGATTCCACAACATCACGACCAAGA
CCAACTGATTGCCACGATCGCCACGGCTCCACAGCAAACGGTTCATGCCC
AGGTGGTGGAGGACATCCATCATCAGGGCCAGATTCTCCAGGCAACGACC
CAGACCAACGCAGCAGGACAACAGCAGACCATTGTGACAACCGACGCGGC
TAAACATGACCAGGCAGTGATTCAGGCTTTTCTTCCGGCACGCAAACGCA
AACCACGCGTAAAGAAAATGTCACCTACGGCACCGAAAATAAGCAAAGTT
GAAGGAATGGATACGATTATGGGCACACCGACCTCTTCACACGGCTCTGG
ATCCGTGCAGCAGGTGCTTGGCGAAAATGGAGCCGAGGGCCAACTGCTAT
CATCCACACCGATCATCAAGAGCGAAGGACAAAAGGTAGAGACTATTGTG
ACCATGGACCCCAACAACATGATACCGGTAACGTCGGCTAATGCGGCAAC
TGGCGAGATAACACCAGCACAAGGAGCCACTGGCTCATCTGGCGGCAATA
CAAGCGGCGTCCTATCCACGCCAAAGGCAAAACGCGCTAAACATCCGCCC
GGAACAGAGAAACCACGTTCACGATCACAATCTGAACAACCTGCTACTTG
CCCCATTTGCTATGCTGTCATTCGTCAATCCCGGAACCTGCGGCGCCATC
TCGAGCTGCGGCATTTTGCCAAACCCGGCGTGAAGAAGGAGAAGAAAAGT
AAGTCCGGTAACGATACAACCCTAGACTCCAGCATGGAGATGAACACCAC
GGCAGAGGGCGACAACACAGTGGGCAGTGATGGAGCAGGCGGAGCAGGAT
CAGCAGGAGGACAATCATCTGGTACGACGCCAACGAGAGTGATATCGAAT
GCACCGCAGGCCGCGGGGGCGCCGGCCATCCTGGCCCAAGGTGTGCTGCC
CCAGCAGCAGCAACAGCAGCAACTGCAGCAGCAACACCAGCAGCACTTGA
CAGCAACATTAGCGGGTGGTGGACAGGCATACATCAAACATGAGGGCGGC
GGCGGGGGCGGCACTGGGCAGCAGCAGCAACAGCAAGCGGCACAACAGCA
GGGCATGCAGAACGTCATACACATTGTGGGCGATCAGGTCTTCATACCGC
AGCAGCAACAGCCGCAGCCGCAGTAGCGAAGCTTTCTAGACCAT
BS08259.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:40:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trl-RH | 1560 | CG33261-PH | 1..1560 | 17..1576 | 7800 | 100 | Plus |
| Trl-RE | 1560 | CG33261-PE | 1..1560 | 17..1576 | 7800 | 100 | Plus |
| Trl-RB | 1560 | CG33261-PB | 1..1560 | 17..1576 | 7800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trl-RH | 1911 | CG33261-RH | 291..1851 | 17..1577 | 7805 | 100 | Plus |
| Trl-RE | 2156 | CG33261-RE | 536..2096 | 17..1577 | 7805 | 100 | Plus |
| Trl-RB | 4441 | CG33261-RB | 357..1917 | 17..1577 | 7805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:40:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14752905..14753471 | 1577..1011 | 2835 | 100 | Minus |
| 3L | 28110227 | 3L | 14754085..14754552 | 674..207 | 2340 | 100 | Minus |
| 3L | 28110227 | 3L | 14753631..14753966 | 1010..675 | 1680 | 100 | Minus |
| 3L | 28110227 | 3L | 14756904..14757095 | 208..17 | 960 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6841 | 1469..1579 | 132 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6878 | 1469..1577 | 116 | 61.8 | Plus |
BS08259.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:52:01 Download gff for
BS08259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RB | 354..1919 | 17..1583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:47 Download gff for
BS08259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RE | 536..2096 | 17..1578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:42 Download gff for
BS08259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RB | 354..1914 | 17..1578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:06 Download gff for
BS08259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RB | 357..1917 | 17..1578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:06 Download gff for
BS08259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14752904..14753471 | 1011..1578 | 99 | <- | Minus |
| 3L | 14753631..14753966 | 675..1010 | 100 | <- | Minus |
| 3L | 14754085..14754550 | 209..674 | 100 | <- | Minus |
| 3L | 14756904..14757095 | 17..208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:47 Download gff for
BS08259.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14746004..14746571 | 1011..1578 | 99 | <- | Minus |
| arm_3L | 14746731..14747066 | 675..1010 | 100 | <- | Minus |
| arm_3L | 14747185..14747650 | 209..674 | 100 | <- | Minus |
| arm_3L | 14750004..14750195 | 17..208 | 100 | | Minus |
BS08259.pep Sequence
Translation from 16 to 1575
> BS08259.pep
MSLPMNSLYSLTWGDYGTSLVSAIQLLRCHGDLVDCTLAAGGRSFPAHKI
VLCAASPFLLDLLKNTPCKHPVVMLAGVNANDLEALLEFVYRGEVSVDHA
QLPSLLQAAQCLNIQGLAPQTVTKDDYTTHSIQLQHMIPQHHDQDQLIAT
IATAPQQTVHAQVVEDIHHQGQILQATTQTNAAGQQQTIVTTDAAKHDQA
VIQAFLPARKRKPRVKKMSPTAPKISKVEGMDTIMGTPTSSHGSGSVQQV
LGENGAEGQLLSSTPIIKSEGQKVETIVTMDPNNMIPVTSANAATGEITP
AQGATGSSGGNTSGVLSTPKAKRAKHPPGTEKPRSRSQSEQPATCPICYA
VIRQSRNLRRHLELRHFAKPGVKKEKKSKSGNDTTLDSSMEMNTTAEGDN
TVGSDGAGGAGSAGGQSSGTTPTRVISNAPQAAGAPAILAQGVLPQQQQQ
QQLQQQHQQHLTATLAGGGQAYIKHEGGGGGGTGQQQQQQAAQQQGMQNV
IHIVGDQVFIPQQQQPQPQ*
BS08259.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trl-PH | 519 | CG33261-PH | 1..519 | 1..519 | 2673 | 100 | Plus |
| Trl-PE | 519 | CG33261-PE | 1..519 | 1..519 | 2673 | 100 | Plus |
| Trl-PB | 519 | CG33261-PB | 1..519 | 1..519 | 2673 | 100 | Plus |
| Trl-PC | 519 | CG33261-PC | 1..519 | 1..519 | 2673 | 100 | Plus |
| Trl-PD | 519 | CG33261-PD | 1..519 | 1..519 | 2673 | 100 | Plus |
