Clone Sequence Records
BS08260.3prime Sequence
836 bp (704 high quality bases) assembled on 2006-01-10
> BS08260.3prime
ATGGTCTAGAAAGCTTTCAGGCCATTAGCTCTATGCCCGTCGGATTCCAA
GCGCTCTGCTGCGGGCCCCACCATTGGTCCAGGCAATCGCTCTGCGTTGC
CTGCATCTTGGGCAGCAGCTGGGCTGCTCGCTCCAGCGCCTGTTTCCAGG
TCTGCTGTGATATCTGCGAGCAGACTTTCGGCCAGCTCTTCGAGGCGCTT
GACGTCGAACTCTTCGTCGACGCCAAGCATGTCTTGTAGAGTAGGCAGAG
GGCCACAACTTTCCAGAGTGAGGCCAGGCTCTTGCTGCTCTTCAGCTGCT
CCGCCAGCAGACGCGCTGACGACTGTGTGTCCACCTGTTGTATACCCTGC
GGCAGAGGGTCAGCTTTGGATGCTGCAGATCCAAGGTTGGTGGACGCACA
GCCCTCAGCGCCTGCGCTGGCGTTGGATTGGCTGATGCATCTGGTGTTGT
GCTGCTGTTGCTGCTTCAGTTCGGCGAGTTCTTGGCGCAGCAGCTCCAGC
TCCGAGTCCAGCTTGTGGTTCTTGGCCAGCAGTGACTCGTTGATGGCCTG
CAGGCTATCGCACTTGTTCTGTAGTATTTCCGTTCTGTCTGTCAGCTCCT
TGATCTCGTAGTCCATCTCCTCCATGCGTGCCTTCTTGCGGTCACGCGAT
GTCTGGGCGGCCACACGGTTCTTTAGCTTCTTTCTTTGCACTTTCTCCTC
CCAGGTTAGATGGTCCAGGCGACGCTTCTTGGCCTTGGGCTGGGATGCAG
CCATGTTATCGTCATCCATGTTCGACGAGGATGCGTATCCCGAACTCGAG
GGCGTGGGCGAGGCGGAGGGCGTGGCCGACACCTTC
BS08260.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9415-PA | 924 | Xbp1-RA | 105..924 | 836..17 | 4100 | 100 | Minus |
CG9415-PB | 1467 | Xbp1-RB | 105..542 | 836..399 | 2190 | 100 | Minus |
CG9415-PB | 1467 | Xbp1-RB | 542..872 | 346..16 | 1655 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Xbp1-RD | 2138 | CG9415-RD | 433..1253 | 836..16 | 4105 | 100 | Minus |
Xbp1-RE | 2119 | CG9415-RE | 437..1234 | 836..16 | 3750 | 97.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:38:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21144201..21144865 | 680..16 | 3325 | 100 | Minus |
2R | 25286936 | 2R | 21143981..21144137 | 836..680 | 785 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 17:38:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3254..3342 | 497..410 | 172 | 67.4 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1048..1177 | 541..417 | 150 | 61.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2417 | 517..412 | 138 | 61.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6890 | 522..416 | 132 | 59.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2756..2879 | 524..403 | 130 | 58.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2822 | 471..429 | 127 | 79.5 | Minus |
BS08260.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:49 Download gff for
BS08260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-PA | 105..924 | 17..836 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:08 Download gff for
BS08260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9415-PA | 105..924 | 17..836 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:29:20 Download gff for
BS08260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RD | 433..1257 | 11..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:50 Download gff for
BS08260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RD | 433..1257 | 11..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:50 Download gff for
BS08260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21143981..21144136 | 681..836 | 100 | -> | Minus |
2R | 21144201..21144869 | 11..680 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:29:20 Download gff for
BS08260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17031486..17031641 | 681..836 | 100 | -> | Minus |
arm_2R | 17031706..17032374 | 11..680 | 99 | | Minus |
BS08260.5prime Sequence
863 bp (742 high quality bases) assembled on 2006-01-10
> BS08260.5prime
GAAGTTATCAGTCGACATGGCACCCACAGCAAACACAGTGCTAATTACCG
TGCCGCGGACAGCAATCACATCGAATAATCTGCCCAAATTGCGGCCCGCC
CCCCTTACGGCAGCTCTGCTGAAGGTGTCGGCCACGCCCTCCGCCTCGCC
CACGCCCTCGAGTTCGGGATACGCATCCTCGTCGAACATGGATGACGATA
ACATGGCTGCATCCCAGCCCAAGGCCAAGAAGCGTCGCCTGGACCATCTA
ACCTGGGAGGAGAAAGTGCAAAGAAAGAAGCTAAAGAACCGTGTGGCCGC
CCAGACATCGCGTGACCGCAAGAAGGCACGCATGGAGGAGATGGACTACG
AGATCAAGGAGCTGACAGACAGAACGGAAATACTACAGAACAAGTGCGAT
AGCCTGCAGGCCATCAACGAGTCACTGCTGGCCAAGAACCACAAGCTGGA
CTCGGAGCTGGAGCTGCTGCGCCAAGAACTCGCCGAACTGAAGCAGCAAC
AGCAGCACAACACCAGATGCATCAGCCAATCCAACGCCAGCGCAGGCGCT
GAGGGCTGTGCGTCCACCAACCTTGGATCTGCAGCATCCAAAGCTGACCC
TCTGCCGCAGGGTATACAACAGGTGGACACACAGTCGTCAGCGCGTCTGC
TGGCGGAGCAGCTGAAGAGCAGCAAGAGCCTGGCCTCACTCTGGAAAGTT
GTGGCCCTCTGCCTACTCTACAAGACATGCTTGGCGTCGACGAAGAGTTC
GACGTCAAGCGCCTCGAAGAGCTGGCCGAAAGTCTGCTCGCAGATATCAC
AGCAGACCTGGAAACAGGCGCTGGAGCGAGCAGCCCAGCTGCTGCCCAAG
ATGCAGGCAACGC
BS08260.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9415-PA | 924 | Xbp1-RA | 1..847 | 17..863 | 4235 | 100 | Plus |
CG9415-PB | 1467 | Xbp1-RB | 1..542 | 17..558 | 2710 | 100 | Plus |
CG9415-PB | 1467 | Xbp1-RB | 542..794 | 611..863 | 1265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Xbp1-RD | 2138 | CG9415-RD | 327..1175 | 15..863 | 4245 | 100 | Plus |
Xbp1-RE | 2119 | CG9415-RE | 331..1156 | 15..863 | 3890 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21144201..21144787 | 277..863 | 2935 | 100 | Plus |
2R | 25286936 | 2R | 21143875..21144137 | 15..277 | 1315 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 17:46:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3254..3342 | 460..547 | 172 | 67.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1048..1177 | 416..540 | 150 | 61.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2417 | 440..545 | 138 | 61.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6890 | 435..541 | 132 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2756..2879 | 433..554 | 130 | 58.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2822 | 486..528 | 127 | 79.5 | Plus |
BS08260.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:50 Download gff for
BS08260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:10 Download gff for
BS08260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9415-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:21:09 Download gff for
BS08260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RD | 320..1175 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:32:59 Download gff for
BS08260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RD | 320..1175 | 9..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:32:59 Download gff for
BS08260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21143868..21144136 | 9..276 | 98 | -> | Plus |
2R | 21144201..21144787 | 277..863 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:21:09 Download gff for
BS08260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17031373..17031641 | 9..276 | 98 | -> | Plus |
arm_2R | 17031706..17032292 | 277..863 | 100 | | Plus |
BS08260.complete Sequence
956 bp (956 high quality bases) assembled on 2006-01-18
GenBank Submission: KX802663
> BS08260.complete
GAAGTTATCAGTCGACATGGCACCCACAGCAAACACAGTGCTAATTACCG
TGCCGCGGACAGCAATCACATCGAATAATCTGCCCAAATTGCGGCCCGCC
CCCCTTACGGCAGCTCTGCTGAAGGTGTCGGCCACGCCCTCCGCCTCGCC
CACGCCCTCGAGTTCGGGATACGCATCCTCGTCGAACATGGATGACGATA
ACATGGCTGCATCCCAGCCCAAGGCCAAGAAGCGTCGCCTGGACCATCTA
ACCTGGGAGGAGAAAGTGCAAAGAAAGAAGCTAAAGAACCGTGTGGCCGC
CCAGACATCGCGTGACCGCAAGAAGGCACGCATGGAGGAGATGGACTACG
AGATCAAGGAGCTGACAGACAGAACGGAAATACTACAGAACAAGTGCGAT
AGCCTGCAGGCCATCAACGAGTCACTGCTGGCCAAGAACCACAAGCTGGA
CTCGGAGCTGGAGCTGCTGCGCCAAGAACTCGCCGAACTGAAGCAGCAAC
AGCAGCACAACACCAGATGCATCAGCCAATCCAACGCCAGCGCAGGCGCT
GAGGGCTGTGCGTCCACCAACCTTGGATCTGCAGCATCCAAAGCTGACCC
TCTGCCGCAGGGTATACAACAGGTGGACACACAGTCGTCAGCGCGTCTGC
TGGCGGAGCAGCTGAAGAGCAGCAAGAGCCTGGCCTCACTCTGGAAAGTT
GTGGCCCTCTGCCTACTCTACAAGACATGCTTGGCGTCGACGAAGAGTTC
GACGTCAAGCGCCTCGAAGAGCTGGCCGAAAGTCTGCTCGCAGATATCAC
AGCAGACCTGGAAACAGGCGCTGGAGCGAGCAGCCCAGCTGCTGCCCAAG
ATGCAGGCAACGCAGAGCGATTGCCTGGACCAATGGTGGGGCCCGCAGCA
GAGCGCTTGGAATCCGACGGGCATAGAGCTAATGGCCTGAAAGCTTTCTA
GACCAT
BS08260.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Xbp1-RD | 924 | CG9415-PD | 1..924 | 17..940 | 4620 | 100 | Plus |
Xbp1-RE | 1497 | CG9415-PE | 1..570 | 17..586 | 2835 | 99.8 | Plus |
Xbp1-RE | 1497 | CG9415-PE | 562..902 | 601..941 | 1705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Xbp1-RD | 2138 | CG9415-RD | 327..1253 | 15..941 | 4635 | 100 | Plus |
Xbp1-RE | 2119 | CG9415-RE | 331..902 | 15..586 | 2845 | 99.8 | Plus |
Xbp1-RE | 2119 | CG9415-RE | 894..1234 | 601..941 | 1705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21144201..21144865 | 277..941 | 3325 | 100 | Plus |
2R | 25286936 | 2R | 21143875..21144137 | 15..277 | 1315 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:46:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3254..3342 | 460..547 | 172 | 67.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1048..1177 | 416..540 | 150 | 61.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2417 | 440..545 | 138 | 61.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6890 | 435..541 | 132 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2756..2879 | 433..554 | 130 | 58.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2822 | 486..528 | 127 | 79.5 | Plus |
BS08260.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:33 Download gff for
BS08260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RA | 1..924 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:34 Download gff for
BS08260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RC | 324..1261 | 9..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:54 Download gff for
BS08260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RD | 329..1251 | 17..939 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:33 Download gff for
BS08260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RA | 324..1261 | 9..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:39 Download gff for
BS08260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Xbp1-RD | 329..1251 | 17..939 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:39 Download gff for
BS08260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21143877..21144136 | 17..276 | 100 | -> | Plus |
2R | 21144201..21144863 | 277..939 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:54 Download gff for
BS08260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17031382..17031641 | 17..276 | 100 | -> | Plus |
arm_2R | 17031706..17032368 | 277..939 | 100 | | Plus |
BS08260.pep Sequence
Translation from 16 to 939
> BS08260.pep
MAPTANTVLITVPRTAITSNNLPKLRPAPLTAALLKVSATPSASPTPSSS
GYASSSNMDDDNMAASQPKAKKRRLDHLTWEEKVQRKKLKNRVAAQTSRD
RKKARMEEMDYEIKELTDRTEILQNKCDSLQAINESLLAKNHKLDSELEL
LRQELAELKQQQQHNTRCISQSNASAGAEGCASTNLGSAASKADPLPQGI
QQVDTQSSARLLAEQLKSSKSLASLWKVVALCLLYKTCLASTKSSTSSAS
KSWPKVCSQISQQTWKQALERAAQLLPKMQATQSDCLDQWWGPQQSAWNP
TGIELMA*
BS08260.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Xbp1-PD | 307 | CG9415-PD | 1..307 | 1..307 | 1554 | 100 | Plus |
Xbp1-PE | 498 | CG9415-PE | 1..190 | 1..190 | 948 | 100 | Plus |