Clone BS08260 Report

Search the DGRC for BS08260

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:82
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptXbp1-RD
Protein status:BS08260.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08260.3prime Sequence

836 bp (704 high quality bases) assembled on 2006-01-10

> BS08260.3prime
ATGGTCTAGAAAGCTTTCAGGCCATTAGCTCTATGCCCGTCGGATTCCAA
GCGCTCTGCTGCGGGCCCCACCATTGGTCCAGGCAATCGCTCTGCGTTGC
CTGCATCTTGGGCAGCAGCTGGGCTGCTCGCTCCAGCGCCTGTTTCCAGG
TCTGCTGTGATATCTGCGAGCAGACTTTCGGCCAGCTCTTCGAGGCGCTT
GACGTCGAACTCTTCGTCGACGCCAAGCATGTCTTGTAGAGTAGGCAGAG
GGCCACAACTTTCCAGAGTGAGGCCAGGCTCTTGCTGCTCTTCAGCTGCT
CCGCCAGCAGACGCGCTGACGACTGTGTGTCCACCTGTTGTATACCCTGC
GGCAGAGGGTCAGCTTTGGATGCTGCAGATCCAAGGTTGGTGGACGCACA
GCCCTCAGCGCCTGCGCTGGCGTTGGATTGGCTGATGCATCTGGTGTTGT
GCTGCTGTTGCTGCTTCAGTTCGGCGAGTTCTTGGCGCAGCAGCTCCAGC
TCCGAGTCCAGCTTGTGGTTCTTGGCCAGCAGTGACTCGTTGATGGCCTG
CAGGCTATCGCACTTGTTCTGTAGTATTTCCGTTCTGTCTGTCAGCTCCT
TGATCTCGTAGTCCATCTCCTCCATGCGTGCCTTCTTGCGGTCACGCGAT
GTCTGGGCGGCCACACGGTTCTTTAGCTTCTTTCTTTGCACTTTCTCCTC
CCAGGTTAGATGGTCCAGGCGACGCTTCTTGGCCTTGGGCTGGGATGCAG
CCATGTTATCGTCATCCATGTTCGACGAGGATGCGTATCCCGAACTCGAG
GGCGTGGGCGAGGCGGAGGGCGTGGCCGACACCTTC

BS08260.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9415-PA 924 Xbp1-RA 105..924 836..17 4100 100 Minus
CG9415-PB 1467 Xbp1-RB 105..542 836..399 2190 100 Minus
CG9415-PB 1467 Xbp1-RB 542..872 346..16 1655 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Xbp1-RD 2138 CG9415-RD 433..1253 836..16 4105 100 Minus
Xbp1-RE 2119 CG9415-RE 437..1234 836..16 3750 97.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21144201..21144865 680..16 3325 100 Minus
2R 25286936 2R 21143981..21144137 836..680 785 100 Minus
Blast to na_te.dros performed 2015-02-11 17:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3254..3342 497..410 172 67.4 Minus
roo 9092 roo DM_ROO 9092bp 1048..1177 541..417 150 61.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2417 517..412 138 61.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6780..6890 522..416 132 59.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2756..2879 524..403 130 58.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2822 471..429 127 79.5 Minus

BS08260.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:49 Download gff for BS08260.3prime
Subject Subject Range Query Range Percent Splice Strand
Xbp1-PA 105..924 17..836 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:08 Download gff for BS08260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9415-PA 105..924 17..836 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:29:20 Download gff for BS08260.3prime
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RD 433..1257 11..836 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:50 Download gff for BS08260.3prime
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RD 433..1257 11..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:50 Download gff for BS08260.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21143981..21144136 681..836 100 -> Minus
2R 21144201..21144869 11..680 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:29:20 Download gff for BS08260.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17031486..17031641 681..836 100 -> Minus
arm_2R 17031706..17032374 11..680 99   Minus

BS08260.5prime Sequence

863 bp (742 high quality bases) assembled on 2006-01-10

> BS08260.5prime
GAAGTTATCAGTCGACATGGCACCCACAGCAAACACAGTGCTAATTACCG
TGCCGCGGACAGCAATCACATCGAATAATCTGCCCAAATTGCGGCCCGCC
CCCCTTACGGCAGCTCTGCTGAAGGTGTCGGCCACGCCCTCCGCCTCGCC
CACGCCCTCGAGTTCGGGATACGCATCCTCGTCGAACATGGATGACGATA
ACATGGCTGCATCCCAGCCCAAGGCCAAGAAGCGTCGCCTGGACCATCTA
ACCTGGGAGGAGAAAGTGCAAAGAAAGAAGCTAAAGAACCGTGTGGCCGC
CCAGACATCGCGTGACCGCAAGAAGGCACGCATGGAGGAGATGGACTACG
AGATCAAGGAGCTGACAGACAGAACGGAAATACTACAGAACAAGTGCGAT
AGCCTGCAGGCCATCAACGAGTCACTGCTGGCCAAGAACCACAAGCTGGA
CTCGGAGCTGGAGCTGCTGCGCCAAGAACTCGCCGAACTGAAGCAGCAAC
AGCAGCACAACACCAGATGCATCAGCCAATCCAACGCCAGCGCAGGCGCT
GAGGGCTGTGCGTCCACCAACCTTGGATCTGCAGCATCCAAAGCTGACCC
TCTGCCGCAGGGTATACAACAGGTGGACACACAGTCGTCAGCGCGTCTGC
TGGCGGAGCAGCTGAAGAGCAGCAAGAGCCTGGCCTCACTCTGGAAAGTT
GTGGCCCTCTGCCTACTCTACAAGACATGCTTGGCGTCGACGAAGAGTTC
GACGTCAAGCGCCTCGAAGAGCTGGCCGAAAGTCTGCTCGCAGATATCAC
AGCAGACCTGGAAACAGGCGCTGGAGCGAGCAGCCCAGCTGCTGCCCAAG
ATGCAGGCAACGC

BS08260.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9415-PA 924 Xbp1-RA 1..847 17..863 4235 100 Plus
CG9415-PB 1467 Xbp1-RB 1..542 17..558 2710 100 Plus
CG9415-PB 1467 Xbp1-RB 542..794 611..863 1265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Xbp1-RD 2138 CG9415-RD 327..1175 15..863 4245 100 Plus
Xbp1-RE 2119 CG9415-RE 331..1156 15..863 3890 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21144201..21144787 277..863 2935 100 Plus
2R 25286936 2R 21143875..21144137 15..277 1315 100 Plus
Blast to na_te.dros performed 2015-02-11 17:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3254..3342 460..547 172 67.4 Plus
roo 9092 roo DM_ROO 9092bp 1048..1177 416..540 150 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2417 440..545 138 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6780..6890 435..541 132 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2756..2879 433..554 130 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2822 486..528 127 79.5 Plus

BS08260.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:50 Download gff for BS08260.5prime
Subject Subject Range Query Range Percent Splice Strand
Xbp1-PA 1..847 17..863 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:10 Download gff for BS08260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9415-PA 1..847 17..863 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:21:09 Download gff for BS08260.5prime
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RD 320..1175 9..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:32:59 Download gff for BS08260.5prime
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RD 320..1175 9..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:32:59 Download gff for BS08260.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21143868..21144136 9..276 98 -> Plus
2R 21144201..21144787 277..863 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:21:09 Download gff for BS08260.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17031373..17031641 9..276 98 -> Plus
arm_2R 17031706..17032292 277..863 100   Plus

BS08260.complete Sequence

956 bp (956 high quality bases) assembled on 2006-01-18

GenBank Submission: KX802663

> BS08260.complete
GAAGTTATCAGTCGACATGGCACCCACAGCAAACACAGTGCTAATTACCG
TGCCGCGGACAGCAATCACATCGAATAATCTGCCCAAATTGCGGCCCGCC
CCCCTTACGGCAGCTCTGCTGAAGGTGTCGGCCACGCCCTCCGCCTCGCC
CACGCCCTCGAGTTCGGGATACGCATCCTCGTCGAACATGGATGACGATA
ACATGGCTGCATCCCAGCCCAAGGCCAAGAAGCGTCGCCTGGACCATCTA
ACCTGGGAGGAGAAAGTGCAAAGAAAGAAGCTAAAGAACCGTGTGGCCGC
CCAGACATCGCGTGACCGCAAGAAGGCACGCATGGAGGAGATGGACTACG
AGATCAAGGAGCTGACAGACAGAACGGAAATACTACAGAACAAGTGCGAT
AGCCTGCAGGCCATCAACGAGTCACTGCTGGCCAAGAACCACAAGCTGGA
CTCGGAGCTGGAGCTGCTGCGCCAAGAACTCGCCGAACTGAAGCAGCAAC
AGCAGCACAACACCAGATGCATCAGCCAATCCAACGCCAGCGCAGGCGCT
GAGGGCTGTGCGTCCACCAACCTTGGATCTGCAGCATCCAAAGCTGACCC
TCTGCCGCAGGGTATACAACAGGTGGACACACAGTCGTCAGCGCGTCTGC
TGGCGGAGCAGCTGAAGAGCAGCAAGAGCCTGGCCTCACTCTGGAAAGTT
GTGGCCCTCTGCCTACTCTACAAGACATGCTTGGCGTCGACGAAGAGTTC
GACGTCAAGCGCCTCGAAGAGCTGGCCGAAAGTCTGCTCGCAGATATCAC
AGCAGACCTGGAAACAGGCGCTGGAGCGAGCAGCCCAGCTGCTGCCCAAG
ATGCAGGCAACGCAGAGCGATTGCCTGGACCAATGGTGGGGCCCGCAGCA
GAGCGCTTGGAATCCGACGGGCATAGAGCTAATGGCCTGAAAGCTTTCTA
GACCAT

BS08260.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
Xbp1-RD 924 CG9415-PD 1..924 17..940 4620 100 Plus
Xbp1-RE 1497 CG9415-PE 1..570 17..586 2835 99.8 Plus
Xbp1-RE 1497 CG9415-PE 562..902 601..941 1705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
Xbp1-RD 2138 CG9415-RD 327..1253 15..941 4635 100 Plus
Xbp1-RE 2119 CG9415-RE 331..902 15..586 2845 99.8 Plus
Xbp1-RE 2119 CG9415-RE 894..1234 601..941 1705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21144201..21144865 277..941 3325 100 Plus
2R 25286936 2R 21143875..21144137 15..277 1315 100 Plus
Blast to na_te.dros performed 2014-11-27 14:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3254..3342 460..547 172 67.4 Plus
roo 9092 roo DM_ROO 9092bp 1048..1177 416..540 150 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2417 440..545 138 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6780..6890 435..541 132 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2756..2879 433..554 130 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2822 486..528 127 79.5 Plus

BS08260.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:33 Download gff for BS08260.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RA 1..924 17..940 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:34 Download gff for BS08260.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RC 324..1261 9..946 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:54 Download gff for BS08260.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RD 329..1251 17..939 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:33 Download gff for BS08260.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RA 324..1261 9..946 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:39 Download gff for BS08260.complete
Subject Subject Range Query Range Percent Splice Strand
Xbp1-RD 329..1251 17..939 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:39 Download gff for BS08260.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21143877..21144136 17..276 100 -> Plus
2R 21144201..21144863 277..939 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:54 Download gff for BS08260.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17031382..17031641 17..276 100 -> Plus
arm_2R 17031706..17032368 277..939 100   Plus

BS08260.pep Sequence

Translation from 16 to 939

> BS08260.pep
MAPTANTVLITVPRTAITSNNLPKLRPAPLTAALLKVSATPSASPTPSSS
GYASSSNMDDDNMAASQPKAKKRRLDHLTWEEKVQRKKLKNRVAAQTSRD
RKKARMEEMDYEIKELTDRTEILQNKCDSLQAINESLLAKNHKLDSELEL
LRQELAELKQQQQHNTRCISQSNASAGAEGCASTNLGSAASKADPLPQGI
QQVDTQSSARLLAEQLKSSKSLASLWKVVALCLLYKTCLASTKSSTSSAS
KSWPKVCSQISQQTWKQALERAAQLLPKMQATQSDCLDQWWGPQQSAWNP
TGIELMA*

BS08260.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
Xbp1-PD 307 CG9415-PD 1..307 1..307 1554 100 Plus
Xbp1-PE 498 CG9415-PE 1..190 1..190 948 100 Plus