Clone BS08262 Report

Search the DGRC for BS08262

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:82
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptTaf2-RA
Protein status:BS08262.pep: full length peptide match
Sequenced Size:3698

Clone Sequence Records

BS08262.3prime Sequence

804 bp (766 high quality bases) assembled on 2006-01-10

> BS08262.3prime
ATGGTCTAGAAAGCTTTTAGTTAAGGTTCATGGGCGGCAGGCTATTGCTG
TTGCTACTGTCCTCCGAGCTGAGAGTGTCCGGAGTGGCTGTCTCGCGCGC
CTGCAGGCGTGATATATGCGGGTCACGCTTGTCCTTATCCTTTCGCTCCT
TGTCCTTGTCCTTGTCCTTGTCCTTGCTGTGCCTATGCTTGTGTTTGTGC
TTATGCTTCTTCTTCTCCTTCTTCTTTTTCTTCTTGAGCCCACCATCGCC
GGACTTCAATTTGCCCTCCTCGTGGCTACTCTCATATCTGGTGGAGTCGC
CCACGTCGAGCATTGTGGATGAGTTATCATCCTCGGCGTACATTTCGTTC
TTAAGGCGCTTGGCAGCCTGATGGGTATCACGTGCTTCTTCATCTGCCTG
CAGGGCATTCACTTTGGTCTCACTGTCATAGGCCTGCACGTTAACTGGTT
CATCTAGCACGGTGATCTCCTCGCTGCGTTCCAGCTTGATAATCTCATCG
CCCACCTCAAATGCTTCTGTGGCCGTTCGCTTGATGGTAACCATTGCCGG
CTTTTGCCGCTCCTGTGGCTCATTGTCCAAAGTATTCGTTGGTGTTGGCA
AATGTGACTTTGAATCACTGGTCTTCTTGAAGCTGCCGGTTACGCTGCCT
ACACTGCTATTATTGTCCTTCATCAAATCCTTGTAGAAGCTTTGGTTCTC
GCCGGCCTGCAAGCAATTCGGACGCTTAATTCCGTACAGTGCGTAGTACA
GATCGACAATATCGCAGCGCAGCTTGGTATCGTAGGGCAAGCGGTTAATA
CTGA

BS08262.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6711-PA 3666 Taf2-RA 2879..3666 804..17 3915 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
Taf2-RB 3858 CG6711-RB 2993..3780 804..17 3925 99.9 Minus
Taf2-RA 3972 CG6711-RA 2993..3780 804..17 3925 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9884603..9885390 17..804 3925 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 18:20:53 has no hits.

BS08262.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:54 Download gff for BS08262.3prime
Subject Subject Range Query Range Percent Splice Strand
Taf2-PA 2880..3666 17..803 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:14 Download gff for BS08262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6711-PA 2880..3666 17..803 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:23:51 Download gff for BS08262.3prime
Subject Subject Range Query Range Percent Splice Strand
Taf2-RA 2994..3780 17..803 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:48:53 Download gff for BS08262.3prime
Subject Subject Range Query Range Percent Splice Strand
Taf2-RA 2994..3780 17..803 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:48:53 Download gff for BS08262.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9884603..9885389 17..803 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:23:51 Download gff for BS08262.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9877703..9878489 17..803 99   Plus

BS08262.5prime Sequence

865 bp (838 high quality bases) assembled on 2006-01-10

> BS08262.5prime
GAAGTTATCAGTCGACATGGAAACGCAACCTGAGGTGCCCGAGGTGCCGC
TGCGACCGTTTAAATTGGCGCATCAGGTTGTGAGCCTCACGGGCATCAGT
TTCGAGCGGAGGAGCATAATCGGCGTGGTCGAGCTGACCATTGTGCCGAA
CAGCGAGAATCTGCGCCTGATACGCCTGAATGCCAAGCAGCTGAGAATCT
ACAGCGTCGTTTTGAACGATGTCTGCCAGGCGGATTTCACGTACTTCGAT
CCCTTCCAGAACATCTGCTACAAGGAGCACAAGAGCCGCGCGCTGGAGGT
CTACTCCAAGCATCATCTGACCGCCGCCCAGTACACCGATCCCGATGTGA
ACAACGGCGAACTGCTCATCCAGGTTCCGCCCGAGGGCTACTCTATGATC
CAGGAGGGTCAGGGTCTGCGCATCCGCATCGAGTTCTCGTTGGAGAATCC
CAAATGCGGCGTACATTTTGTCATACCACCCGCTTCAACGGACGAGGAGA
CACAGATGAACAGCTCGCATATGTTCACCAATTGCTATGAAAACTCGTCG
AGATTGTGGTTTCCCTGCGTGGACAGTTTCGCCGATCCCTGCACCTGGCG
GCTGGAGTTCACTGTCGACAAAAATATGACCGCCGTTTCGTGTGGAGAAC
TTCTAGAAGTCATTATGACCCCAGATCTGCGAAAGAAAACCTTCCACTAT
TCGGTTAGCACACCAGTATGTGCACCAAATATTGCGCTGGCTGTGGGTCA
GTTTGAGATCTACGTGGATCCGCACATGCATGAAGTGACCCACTTTTGTC
TGCCCGGATTGTTGCCGCTGTTAAAAAATACGGTTCGCTATTTGCACGAG
GCATTTGAATTTTAC

BS08262.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6711-PA 3666 Taf2-RA 1..849 17..865 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
Taf2-RB 3858 CG6711-RB 115..963 17..865 4245 100 Plus
Taf2-RA 3972 CG6711-RA 115..963 17..865 4245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9887596..9888339 865..122 3720 100 Minus
3L 28110227 3L 9888401..9888456 122..67 280 100 Minus
3L 28110227 3L 9888520..9888569 66..17 250 100 Minus
Blast to na_te.dros performed on 2015-02-04 01:23:27 has no hits.

BS08262.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:37:55 Download gff for BS08262.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf2-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:16 Download gff for BS08262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6711-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:40:27 Download gff for BS08262.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf2-RA 107..963 5..865 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:05 Download gff for BS08262.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf2-RA 107..963 5..865 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:05 Download gff for BS08262.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9887596..9888339 122..865 100 <- Minus
3L 9888402..9888456 67..121 100 -> Minus
3L 9888520..9888577 5..66 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:40:27 Download gff for BS08262.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9880696..9881439 122..865 100 <- Minus
arm_3L 9881502..9881556 67..121 100 -> Minus
arm_3L 9881620..9881677 5..66 91   Minus

BS08262.complete Sequence

3698 bp assembled on 2008-08-15

GenBank Submission: KX800525

> BS08262.complete
GAAGTTATCAGTCGACATGGAAACGCAACCTGAGGTGCCCGAGGTGCCGC
TGCGACCGTTTAAATTGGCGCATCAGGTTGTGAGCCTCACGGGCATCAGT
TTCGAGCGGAGGAGCATAATCGGCGTGGTCGAGCTGACCATTGTGCCGAA
CAGCGAGAATCTGCGCCTGATACGCCTGAATGCCAAGCAGCTGAGAATCT
ACAGCGTCGTTTTGAACGATGTCTGCCAGGCGGATTTCACGTACTTCGAT
CCCTTCCAGAACATCTGCTACAAGGAGCACAAGAGCCGCGCGCTGGAGGT
CTACTCCAAGCATCATCTGACCGCCGCCCAGTACACCGATCCCGATGTGA
ACAACGGCGAACTGCTCATCCAGGTTCCGCCCGAGGGCTACTCTATGATC
CAGGAGGGTCAGGGTCTGCGCATCCGCATCGAGTTCTCGTTGGAGAATCC
CAAATGCGGCGTACATTTTGTCATACCACCCGCTTCAACGGACGAGGAGA
CACAGATGAACAGCTCGCATATGTTCACCAATTGCTATGAAAACTCGTCG
AGATTGTGGTTTCCCTGCGTGGACAGTTTCGCCGATCCCTGCACCTGGCG
GCTGGAGTTCACTGTCGACAAAAATATGACCGCCGTTTCGTGTGGAGAAC
TTCTAGAAGTCATTATGACCCCAGATCTGCGAAAGAAAACCTTCCACTAT
TCGGTTAGCACACCAGTATGTGCACCAAATATTGCGCTGGCTGTGGGTCA
GTTTGAGATCTACGTGGATCCGCACATGCATGAAGTGACCCACTTTTGTC
TGCCCGGATTGTTGCCGCTGTTAAAAAATACGGTTCGCTATTTGCACGAG
GCATTTGAATTTTACGAGGAGACCTTATCTACGCGCTACCCATTCAGTTG
CTACAAACAAGTGTTTGTAGACGAATTGGACACGGACATAAGTGCCTATG
CCACTATGAGCATTGCTTCGGTGAATCTGCTGCACTCCATAGCTATCATC
GATCAGACCTATATATCTCGAACCTTTATGTCGCGCGCTGTGGCTGAGCA
ATTCTTCGGCTGCTTTATTACATCCCATCATTGGTCGGACACCTGGCTGG
CCAAGGGCATTGCGGAGTACCTGTGTGGATTGTATTCCAGGAAGTGCTTC
GGCAACAACGAGTACCGTGCTTGGGTGCAATCTGAACTGGCGCGTGTCGT
TCGCTACGAGGAGCAGTATGGCGGCATTATTCTCGATTGCAGTCAGCCGC
CAGCTCCTTTGCCTGTTTCGGGCACAAATCAATCGGCGGCTTCCAGCAAA
CAGCAGGAGATTGTCCACTATTTTCCCATCAAGAGTTTGCACACCGTATC
GCCGAAGTATGTGGAGGCGATGCGAAGGAAAGCGCATTTCGTAATCCGGA
TGCTGGAGAACCGCATCGGGCAGGAGCTGCTGATTCAGGTGTTCAATAAG
CAATTGGCTTTGGCTTCAAGTGCGGCAACGACAAAGATCGGTGCAGGACT
CTGGTCTCAGCTGCTCATCTCGACCAACATTTTTATCAAGGCCATCTTCA
CCGTAACCGGAAAAGATATGTCTGTCTTCATGGACCAGTGGGTGCGCACT
GGAGGGCACGCCAAGTTTTCGCTCACATCTGTGTTCAATCGCAAGAGAAA
CACGATTGAACTGGAAATCCGCCAGGACTATGTTAATCAGCGGGGAATTA
GAAAATACAATGGTCCATTGATGGTGCAGCTGCAGGAGTTGGATGGAACG
TTTAAGCACACATTGCAGATTGAGAGTACCCTGGTAAAGTCCGATATCAC
TTGCCACTCGAAGAGCAGGCGTAACAAAAAGAAGAAGATCCCCTTGTGCA
CCGGTGAGGAAGTGGATATGGATTTATCAGCCATGGACGACTCACCTGTG
CTTTGGATCCGCCTCGATCCCGAAATGATTCTGCTGCGCGACCTCATAAT
CGAACAGCCCGACTTCCAGTGGCAGTATCAGCTTCGGCATGAACGTGATG
TTACTGCTCAATTTCAGGCGATTCAAGCCCTGCAAAAGTACCCCACGAAT
GCCACCAGGCTTGCTTTAACCGACACCATAGAAAGCGAACGTTGCTTCTA
TCAGGTGCGCTGCGAGGCAGCCCATAGCTTGACCAAAGTGGCCAACCAGA
TGGTGGCCTCCTGGAGTGGACCGCCCGCCATGCTGAACATATTTAGGAAG
TTTTTCGGCTCATTTAGTGCTCCGCACATTATCAAACTGAACAACTTCTC
CAACTTTCAGCTGTACTTCCTGCAGAAGGCTATTCCCGTAGCCATGGCAG
GTCTGCGCACATCTCATGGTATTTGCCCGCCGGAAGTGATGCGTTTTCTT
TTCGATCTCTTCAAGTACAACGAGAATTCGCGTAACCATTACACGGATGC
ATACTACAGGGCAGCTTTGGTAGAAGCTCTAGGCGAAACCTTAACACCTG
TGGTCTCCGTTGCTATCCATGGCACACAAATCACTACGGACAGTCTATCC
ACGGATGCGAAACTTGTGCTAGATGAAGTTACACGTCTGCTGAACATGGA
GAAACATCTACCCTCGTACAAGTACATGGTGTCCGTGTCGTGTCTGAAGG
TCATCCGGAAGCTGCAAAAATTCGGTCATCTGCCCTCACTGCCGCACATT
TACCGCAGCTATGCCGAATATGGAATATATCTCGATCTCCGCATTGCTGC
TATGGAGTGTCTCGTGGACTTTGTGAAAGTGGATGGGCGCAGCGAGGATT
TGGAACATTTGATTACTCTGCTGGAAACTGATCCGGATCCGGCTGCTCGC
CATGCACTGGCCCAACTGCTGATCGATAATCCGCCTTTCACACGCGAATC
TCGCAGCCGTCTGGATAAACCCAATCTCGTGGATCGTCTATGGTTCAGTA
TTAACCGCTTGCCCTACGATACCAAGCTGCGCTGCGATATTGTCGATCTG
TACTACGCACTGTACGGAACTAAGCGTCCGAATTGCTTGCAGGCCGGCGA
GAACCAAAGCTTCTACAAGGATTTGATGAAGGACAATAATAGCAGTGTAG
GCAGCGTAACCGGCAGCTTCAAGAAGACCAGTGATTCAAAGTCACATTTG
CCAACACCAACGAATACTTTGGACAATGAGCCACAGGAGCGGCAAAAGCC
GGCAATGGTTACCATCAAGCGAACGGCCACAGAAGCATTTGAGGTGGGCG
ATGAGATTATCAAGCTGGAACGCAGCGAGGAGATCACCGTGCTAGATGAA
CCAGTTAACGTGCAGGCCTATGACAGTGAGACCAAAGTGAATGCCCTGCA
GGCAGATGAAGAAGCACGTGATACCCATCAGGCTGCCAAGCGCCTTAAGA
ACGAAATGTACGCCGAGGATGATAACTCATCCACAATGCTCGACGTGGGC
GACTCCACCAGATATGAGAGTAGCCACGAGGAGGGCAAATTGAAGTCCGG
CGATGGTGGGCTCAAGAAGAAAAAGAAGAAGGAGAAGAAGAAGCATAAGC
ACAAACACAAGCATAGGCACAGCAAGGACAAGGACAAGGACAAGGACAAG
GAGCGAAAGGATAAGGACAAGCGTGACCCGCATATATCACGCCTGCAGGC
GCGCGAGACAGCCACTCCGGACACTCTCAGCTCGGAGGACAGTAGCAACA
GCAATAGCCTGCCGCCCATGAACCTTAACTAAAAGCTTTCTAGACCAT

BS08262.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
Taf2-RB 3666 CG6711-PB 1..3666 17..3682 18330 100 Plus
Taf2-RA 3666 CG6711-PA 1..3666 17..3682 18330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
Taf2-RB 3858 CG6711-RB 115..3780 17..3682 18330 100 Plus
Taf2-RA 3972 CG6711-RA 115..3780 17..3682 18330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9886574..9888339 1887..122 8830 100 Minus
3L 28110227 3L 9884603..9885773 3682..2512 5855 100 Minus
3L 28110227 3L 9886101..9886515 2302..1888 2075 100 Minus
3L 28110227 3L 9885834..9886047 2511..2298 1070 100 Minus
3L 28110227 3L 9888401..9888456 122..67 280 100 Minus
3L 28110227 3L 9888520..9888569 66..17 250 100 Minus
Blast to na_te.dros performed 2014-11-27 14:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
invader1 4032 invader1 INVADER 4032bp 1146..1196 2838..2788 129 72.5 Minus

BS08262.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:53:28 Download gff for BS08262.complete
Subject Subject Range Query Range Percent Splice Strand
Taf2-RA 105..3778 5..3682 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:24 Download gff for BS08262.complete
Subject Subject Range Query Range Percent Splice Strand
Taf2-RA 115..3778 17..3680 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:25 Download gff for BS08262.complete
Subject Subject Range Query Range Percent Splice Strand
Taf2-RA 113..3776 17..3680 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:04 Download gff for BS08262.complete
Subject Subject Range Query Range Percent Splice Strand
Taf2-RA 115..3778 17..3680 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:04 Download gff for BS08262.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9884605..9885773 2512..3680 100 <- Minus
3L 9885834..9886044 2301..2511 100 <- Minus
3L 9886103..9886515 1888..2300 100 <- Minus
3L 9886574..9888339 122..1887 100 <- Minus
3L 9888402..9888459 67..121 94 <- Minus
3L 9888516..9888569 17..66 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:24 Download gff for BS08262.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9877705..9878873 2512..3680 100 <- Minus
arm_3L 9878934..9879144 2301..2511 100 <- Minus
arm_3L 9879203..9879615 1888..2300 100 <- Minus
arm_3L 9879674..9881439 122..1887 100 <- Minus
arm_3L 9881502..9881559 67..121 94 <- Minus
arm_3L 9881616..9881669 17..66 92   Minus

BS08262.pep Sequence

Translation from 16 to 3681

> BS08262.pep
METQPEVPEVPLRPFKLAHQVVSLTGISFERRSIIGVVELTIVPNSENLR
LIRLNAKQLRIYSVVLNDVCQADFTYFDPFQNICYKEHKSRALEVYSKHH
LTAAQYTDPDVNNGELLIQVPPEGYSMIQEGQGLRIRIEFSLENPKCGVH
FVIPPASTDEETQMNSSHMFTNCYENSSRLWFPCVDSFADPCTWRLEFTV
DKNMTAVSCGELLEVIMTPDLRKKTFHYSVSTPVCAPNIALAVGQFEIYV
DPHMHEVTHFCLPGLLPLLKNTVRYLHEAFEFYEETLSTRYPFSCYKQVF
VDELDTDISAYATMSIASVNLLHSIAIIDQTYISRTFMSRAVAEQFFGCF
ITSHHWSDTWLAKGIAEYLCGLYSRKCFGNNEYRAWVQSELARVVRYEEQ
YGGIILDCSQPPAPLPVSGTNQSAASSKQQEIVHYFPIKSLHTVSPKYVE
AMRRKAHFVIRMLENRIGQELLIQVFNKQLALASSAATTKIGAGLWSQLL
ISTNIFIKAIFTVTGKDMSVFMDQWVRTGGHAKFSLTSVFNRKRNTIELE
IRQDYVNQRGIRKYNGPLMVQLQELDGTFKHTLQIESTLVKSDITCHSKS
RRNKKKKIPLCTGEEVDMDLSAMDDSPVLWIRLDPEMILLRDLIIEQPDF
QWQYQLRHERDVTAQFQAIQALQKYPTNATRLALTDTIESERCFYQVRCE
AAHSLTKVANQMVASWSGPPAMLNIFRKFFGSFSAPHIIKLNNFSNFQLY
FLQKAIPVAMAGLRTSHGICPPEVMRFLFDLFKYNENSRNHYTDAYYRAA
LVEALGETLTPVVSVAIHGTQITTDSLSTDAKLVLDEVTRLLNMEKHLPS
YKYMVSVSCLKVIRKLQKFGHLPSLPHIYRSYAEYGIYLDLRIAAMECLV
DFVKVDGRSEDLEHLITLLETDPDPAARHALAQLLIDNPPFTRESRSRLD
KPNLVDRLWFSINRLPYDTKLRCDIVDLYYALYGTKRPNCLQAGENQSFY
KDLMKDNNSSVGSVTGSFKKTSDSKSHLPTPTNTLDNEPQERQKPAMVTI
KRTATEAFEVGDEIIKLERSEEITVLDEPVNVQAYDSETKVNALQADEEA
RDTHQAAKRLKNEMYAEDDNSSTMLDVGDSTRYESSHEEGKLKSGDGGLK
KKKKKEKKKHKHKHKHRHSKDKDKDKDKERKDKDKRDPHISRLQARETAT
PDTLSSEDSSNSNSLPPMNLN*

BS08262.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
Taf2-PB 1221 CG6711-PB 1..1221 1..1221 6383 100 Plus
Taf2-PA 1221 CG6711-PA 1..1221 1..1221 6383 100 Plus