Clone Sequence Records
BS08268.3prime Sequence
860 bp (735 high quality bases) assembled on 2006-01-10
> BS08268.3prime
ATGGTCTAGAAAGCTTCTATGGTGAATGATTGCTGGCTGCCGCTGTAGCC
GCTGCTGATGCTGCAGCTGCCGCTGCCAAGTGTGCTGGAGCAATTGTTGC
ACCCGCCGCCAATCCGATTTCCTGCTTGTGCTCCCTGGCAATGTGACGGC
GCACCGTGTTGTTTCGCGTGAAGGTCCGCTCGCAGAAGGGACATGGCACT
CGGATGCCCTGATGACGCTGCCGGATATGCGCCCGCAGATTCGTCTCGTA
TCCGTACAGACGATCGCAGTAGAGACACTTCAGCTTCTTACCGTCGGCCG
TGTTCACGCTGTTCTTGTTGTTCATCTTGGTGGCGTTCCATACGTTCAAC
ATGTCCGCCGGCGCAATCGACGCGGCCAGGTTACTGGACAGCGTTCCGTC
CGCCTTCAGGTTCTCCAGCAGCGTATTCGGTGTGGTCGACGAGGTGTTCG
AGTTTGGCGGCGGTGGCGGTGAGTACTTCAAGTTCTCCAGCTTCACGCGC
AGATCCTCGGCTCCGTTATCTGTAGACTCATCCATAAGCTCGCGGTCGTC
GTCATTAGCCTCATTGGCACTGCCATTGTTTCGCTCTGATTTCACAATAC
GCTCCAGGCTACTGGTGGCATTTCCATTTCCCGCTGTGGTGCTGGGACTA
TGGTTCTCGTAGCGACTGGACTGTGGCGATGCGCGTTCGGAGTGCATGGT
GTCGGCCTCGGTGGGCGCCGTGGAGGAGGCGCTGGACGAGGGACGGTGGT
ACGGCGGCTTGTTGATGGGGCTGGGACACTCGGAGGACTTGGAGCCATCT
CGCAGGACGGAACCGCGCTGTTCCTGCTCGGAATACGGACTGCGGACTAT
AGCCCTCCTG
BS08268.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31666-PD | 1815 | CG31666-RD | 975..1815 | 857..17 | 4155 | 99.7 | Minus |
CG31666-PA | 1815 | CG31666-RA | 975..1815 | 857..17 | 4155 | 99.7 | Minus |
CG31666-PC | 1815 | CG31666-RC | 975..1815 | 857..17 | 4155 | 99.7 | Minus |
CG31666-PB | 2385 | CG31666-RB | 975..1678 | 857..154 | 3470 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:45:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chinmo-RG | 6089 | CG31666-RG | 2781..3621 | 857..17 | 4175 | 99.8 | Minus |
chinmo-RF | 5037 | CG31666-RF | 1729..2569 | 857..17 | 4175 | 99.8 | Minus |
chinmo-RE | 6320 | CG31666-RE | 3012..3852 | 857..17 | 4175 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1695649..1696149 | 517..17 | 2505 | 100 | Minus |
2L | 23513712 | 2L | 1695185..1695376 | 857..666 | 960 | 100 | Minus |
2L | 23513712 | 2L | 1695435..1695586 | 669..518 | 730 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:45:26 has no hits.
BS08268.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:07 Download gff for
BS08268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31666-PA | 972..1815 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:33 Download gff for
BS08268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31666-PC | 972..1815 | 17..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:33:17 Download gff for
BS08268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chinmo-RE | 3009..3857 | 13..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:57:36 Download gff for
BS08268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chinmo-RE | 3009..3857 | 13..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:57:36 Download gff for
BS08268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1695182..1695376 | 666..860 | 99 | -> | Minus |
2L | 1695439..1695586 | 518..665 | 98 | -> | Minus |
2L | 1695649..1696154 | 13..517 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:33:17 Download gff for
BS08268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1695182..1695376 | 666..860 | 99 | -> | Minus |
arm_2L | 1695439..1695586 | 518..665 | 98 | -> | Minus |
arm_2L | 1695649..1696154 | 13..517 | 99 | | Minus |
BS08268.5prime Sequence
947 bp (820 high quality bases) assembled on 2006-01-10
> BS08268.5prime
GAAGTTATCAGTCGACATGGATCCGCAGCAGCAGTTCTGCCTCAAATGGA
ACAGTTTCTCGTCTAACTTGGCAATAACATTCTCCAATCTGTTCAAATCG
GATCTACTGGCCGATGTCATATTATCCTGCGATGGCGTAGTATTCAAAGC
CCACAAACTTATATTGGCGGCCTGCTCAAAGAAGTTCGCCGATCTGTTTG
AGAACACGCCCACAAATGGCCAGTGCGTCATCATACTGGAGGCGACCACG
CCGGACAACATGGCCGCTCTGCTGGAGTTCATGTACAAAGGCGAGGTCCA
CGTCTCCCAGGAGGCGCTCAACAGTTTCCTCAAGTCCGCCGAGAGTTTGC
AGGTCAAAGGTCTGTCCACGGAAACGGGACGTCTGGCGGCGCAGCAGGCA
CAACAACACATGGGCGACCTGTCGCCACTTGACTCGCCGACGGGCAGGCG
GAGCGTAAGGAACAGCCTGAGCGGCGGTAGCAGCAGCATCGTTCCCGGCG
GAGTCGGAATCGGTCTGGGAGGAGGCGCAACGGGAGCCAACTCTATGTCC
GGCATGGGCATTGGCAACGGATTGAGCTTGGCCGGTATGGCAGCTGGCGG
AGGAATGGCGGCGGCTGCAAATGCGGCGGCCAGTAGCCTGAGCACCCTAG
CGGCCAGCGCGAATATCGTTGACAGATGCGGCAGTGCTGGCGCCAACATA
ATCAGCGGATCGGCTGCAGGGATTGGCGGCTCCCATAGCGGGGGAGCGGG
TAATGGCAGCGGCACAGTTGGAATCGGTGGCAACGGTGTCGGCAGTGGTG
GCGGCAACAATGGACCCATTAGCCTGGGAAGCGGCGCGGGCGCTGCTCAC
CATCTGGGCGGATCCACTGGCATCTTGAAGCANGAATGCGACTCCCTGAT
GCATCCGGGTGGCAGTAGTTCCTCTTTCCGGAATGGGCTACACCCAT
BS08268.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31666-PD | 1815 | CG31666-RD | 1..910 | 17..926 | 4456 | 99.5 | Plus |
CG31666-PA | 1815 | CG31666-RA | 1..910 | 17..926 | 4456 | 99.5 | Plus |
CG31666-PB | 2385 | CG31666-RB | 1..910 | 17..926 | 4456 | 99.5 | Plus |
CG31666-PC | 1815 | CG31666-RC | 1..910 | 17..926 | 4456 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chinmo-RG | 6089 | CG31666-RG | 1806..2736 | 16..947 | 4579 | 99.5 | Plus |
chinmo-RF | 5037 | CG31666-RF | 754..1684 | 16..947 | 4579 | 99.5 | Plus |
chinmo-RE | 6320 | CG31666-RE | 2037..2967 | 16..947 | 4579 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1694542..1695140 | 348..947 | 2894 | 99.2 | Plus |
2L | 23513712 | 2L | 1694223..1694443 | 134..354 | 1105 | 100 | Plus |
2L | 23513712 | 2L | 1690637..1690756 | 16..135 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:05:38 has no hits.
BS08268.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:08 Download gff for
BS08268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31666-PB | 1..930 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:34 Download gff for
BS08268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31666-PC | 1..930 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:01 Download gff for
BS08268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chinmo-RE | 2037..2967 | 16..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:01 Download gff for
BS08268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chinmo-RE | 2037..2967 | 16..947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:01 Download gff for
BS08268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1690637..1690755 | 16..134 | 100 | -> | Plus |
2L | 1694224..1694441 | 135..352 | 100 | -> | Plus |
2L | 1694547..1695140 | 353..947 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:01 Download gff for
BS08268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1690637..1690755 | 16..134 | 100 | -> | Plus |
arm_2L | 1694224..1694441 | 135..352 | 100 | -> | Plus |
arm_2L | 1694547..1695140 | 353..947 | 99 | | Plus |
BS08268.complete Sequence
1847 bp assembled on 2008-08-15
GenBank Submission: KX805445
> BS08268.complete
GAAGTTATCAGTCGACATGGATCCGCAGCAGCAGTTCTGCCTCAAATGGA
ACAGTTTCTCGTCTAACTTGGCAATAACATTCTCCAATCTGTTCAAATCG
GATCTACTGGCCGATGTCATATTATCCTGCGATGGCGTAGTATTCAAAGC
CCACAAACTTATATTGGCGGCCTGCTCAAAGAAGTTCGCCGATCTGTTTG
AGAACACGCCCACAAATGGCCAGTGCGTCATCATACTGGAGGCGACCACG
CCGGACAACATGGCCGCTCTGCTGGAGTTCATGTACAAAGGCGAGGTCCA
CGTCTCCCAGGAGGCGCTCAACAGTTTCCTCAAGTCCGCCGAGAGTTTGC
AGGTCAAAGGTCTGTCCACGGAAACGGGACGTCTGGCGGCGCAGCAGGCA
CAACAACACATGGGCGACCTGTCGCCACTTGACTCGCCGACGGGCAGGCG
GAGCGTAAGGAACAGCCTGAGCGGCGGTAGCAGCAGCATCGTTCCCGGCG
GAGTCGGAATCGGTCTGGGAGGAGGCGCAACGGGAGCCAACTCTATGTCC
GGCATGGGCATTGGCAACGGATTGAGCTTGGCCGGTATGGCAGCTGGCGG
AGGAATGGCGGCGGCTGCAAATGCGGCGGCCAGTAGCCTGAGCACCCTAG
CGGCCAGCGCGAATATCGTTGACAGATGCGGCAGTGCTGGCGCCAACATA
ATCAGCGGATCGGCTGCAGGGATTGGCGGCTCCCATAGCGGGGGAGCGGG
TAATGGCAGCGGCACAGTTGGAATCGGTGGCAACGGTGTCGGCAGTGGTG
GCGGCAACAATGGACCCATTAGCCTGGGAAGCGGCGCGGGCGCTGCTCAC
CATCTGGGCGGATCCACTGGCATCTTGAAGCAGGAATGCGACTCCCTGAT
GCATCCGGGTGGCAGTAGTTCCTCTTCCGGAATGGGCTACACCCATGTGC
CGCCCATCTACCGGCCTATTAACTACGAACCTCCGCGCAAGAGGGCTATA
GTCCGCAGTCCGTATTCCGAGCAGGAACAGCGCGGTTCCGTCCTGCGAGA
TGGCTCCAAGTCCTCCGAGTGTCCCAGCCCCATCAACAAGCCGCCGTACC
ACCGTCCCTCGTCCAGCGCCTCCTCCACGGCGCCCACCGAGGCCGACACC
ATGCACTCCGAACGCGCATCGCCACAGTCCAGTCGCTACGAGAACCATAG
TCCCAGCACCACAGCGGGAAATGGAAATGCCACCAGTAGCCTGGAGCGTA
TTGTGAAATCAGAGCGAAACAATGGCAGTGCCAATGAGGCTAATGACGAC
GACCGCGAGCTTATGGATGAGTCTACAGATAACGGAGCCGAGGATCTGCG
CGTGAAGCTGGAGAACTTGAAGTACTCACCGCCACCGCCGCCAAACTCGA
ACACCTCGTCGACCACACCGAATACGCTGCTGGAGAACCTGAAGGCGGAC
GGAACGCTGTCCAGTAACCTGGCCGCGTCGATTGCGCCGGCGGACATGTT
GAACGTATGGAACGCCACCAAGATGAACAACAAGAACAGCGTGAACACGG
CCGACGGTAAGAAGCTGAAGTGTCTCTACTGCGATCGTCTGTACGGATAC
GAGACGAATCTGCGGGCGCATATCCGGCAGCGTCATCAGGGCATCCGAGT
GCCATGTCCCTTCTGCGAGCGGACCTTCACGCGAAACAACACGGTGCGCC
GTCACATTGCCAGGGAGCACAAGCAGGAAATCGGATTGGCGGCGGGTGCA
ACAATTGCTCCAGCACACTTGGCAGCGGCAGCTGCAGCATCAGCAGCGGC
TACAGCGGCAGCCAGCAATCATTCACCATAGAAGCTTTCTAGACCAT
BS08268.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chinmo-RG | 1815 | CG31666-PG | 1..1815 | 17..1831 | 9000 | 99.7 | Plus |
chinmo-RF | 2523 | CG31666-PF | 1..1815 | 17..1831 | 9000 | 99.7 | Plus |
chinmo-RE | 2523 | CG31666-PE | 1..1815 | 17..1831 | 9000 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chinmo-RG | 6089 | CG31666-RG | 1806..3621 | 16..1831 | 9005 | 99.7 | Plus |
chinmo-RF | 5037 | CG31666-RF | 754..2569 | 16..1831 | 9005 | 99.7 | Plus |
chinmo-RE | 6320 | CG31666-RE | 2037..3852 | 16..1831 | 9005 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1694542..1695376 | 348..1182 | 4130 | 99.6 | Plus |
2L | 23513712 | 2L | 1695649..1696149 | 1331..1831 | 2505 | 100 | Plus |
2L | 23513712 | 2L | 1694223..1694443 | 134..354 | 1105 | 100 | Plus |
2L | 23513712 | 2L | 1695435..1695586 | 1179..1330 | 730 | 98.7 | Plus |
2L | 23513712 | 2L | 1690637..1690756 | 16..135 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:26:40 has no hits.
BS08268.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:19:58 Download gff for
BS08268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chinmo-RC | 754..2574 | 16..1835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:41 Download gff for
BS08268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chinmo-RE | 2038..3852 | 17..1831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:37 Download gff for
BS08268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chinmo-RC | 755..2569 | 17..1831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:57 Download gff for
BS08268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chinmo-RE | 2038..3852 | 17..1831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:57 Download gff for
BS08268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1690638..1690755 | 17..134 | 100 | -> | Plus |
2L | 1694224..1694441 | 135..352 | 100 | -> | Plus |
2L | 1694547..1695376 | 353..1182 | 99 | -> | Plus |
2L | 1695439..1695586 | 1183..1330 | 98 | -> | Plus |
2L | 1695649..1696149 | 1331..1831 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:41 Download gff for
BS08268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1690638..1690755 | 17..134 | 100 | -> | Plus |
arm_2L | 1694224..1694441 | 135..352 | 100 | -> | Plus |
arm_2L | 1694547..1695376 | 353..1182 | 99 | -> | Plus |
arm_2L | 1695439..1695586 | 1183..1330 | 98 | -> | Plus |
arm_2L | 1695649..1696149 | 1331..1831 | 100 | | Plus |
BS08268.pep Sequence
Translation from 16 to 1830
> BS08268.pep
MDPQQQFCLKWNSFSSNLAITFSNLFKSDLLADVILSCDGVVFKAHKLIL
AACSKKFADLFENTPTNGQCVIILEATTPDNMAALLEFMYKGEVHVSQEA
LNSFLKSAESLQVKGLSTETGRLAAQQAQQHMGDLSPLDSPTGRRSVRNS
LSGGSSSIVPGGVGIGLGGGATGANSMSGMGIGNGLSLAGMAAGGGMAAA
ANAAASSLSTLAASANIVDRCGSAGANIISGSAAGIGGSHSGGAGNGSGT
VGIGGNGVGSGGGNNGPISLGSGAGAAHHLGGSTGILKQECDSLMHPGGS
SSSSGMGYTHVPPIYRPINYEPPRKRAIVRSPYSEQEQRGSVLRDGSKSS
ECPSPINKPPYHRPSSSASSTAPTEADTMHSERASPQSSRYENHSPSTTA
GNGNATSSLERIVKSERNNGSANEANDDDRELMDESTDNGAEDLRVKLEN
LKYSPPPPPNSNTSSTTPNTLLENLKADGTLSSNLAASIAPADMLNVWNA
TKMNNKNSVNTADGKKLKCLYCDRLYGYETNLRAHIRQRHQGIRVPCPFC
ERTFTRNNTVRRHIAREHKQEIGLAAGATIAPAHLAAAAAASAAATAAAS
NHSP*
BS08268.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chinmo-PG | 604 | CG31666-PG | 1..604 | 1..604 | 3113 | 100 | Plus |
chinmo-PF | 840 | CG31666-PF | 1..604 | 1..604 | 3113 | 100 | Plus |
chinmo-PE | 840 | CG31666-PE | 1..604 | 1..604 | 3113 | 100 | Plus |
chinmo-PA | 604 | CG31666-PA | 1..604 | 1..604 | 3113 | 100 | Plus |
chinmo-PD | 604 | CG31666-PD | 1..604 | 1..604 | 3113 | 100 | Plus |