Clone BS08268 Report

Search the DGRC for BS08268

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:82
Well:68
Vector:pDNR-Dual
Associated Gene/Transcriptchinmo-RA
Protein status:BS08268.pep: full length peptide match
Sequenced Size:1847

Clone Sequence Records

BS08268.3prime Sequence

860 bp (735 high quality bases) assembled on 2006-01-10

> BS08268.3prime
ATGGTCTAGAAAGCTTCTATGGTGAATGATTGCTGGCTGCCGCTGTAGCC
GCTGCTGATGCTGCAGCTGCCGCTGCCAAGTGTGCTGGAGCAATTGTTGC
ACCCGCCGCCAATCCGATTTCCTGCTTGTGCTCCCTGGCAATGTGACGGC
GCACCGTGTTGTTTCGCGTGAAGGTCCGCTCGCAGAAGGGACATGGCACT
CGGATGCCCTGATGACGCTGCCGGATATGCGCCCGCAGATTCGTCTCGTA
TCCGTACAGACGATCGCAGTAGAGACACTTCAGCTTCTTACCGTCGGCCG
TGTTCACGCTGTTCTTGTTGTTCATCTTGGTGGCGTTCCATACGTTCAAC
ATGTCCGCCGGCGCAATCGACGCGGCCAGGTTACTGGACAGCGTTCCGTC
CGCCTTCAGGTTCTCCAGCAGCGTATTCGGTGTGGTCGACGAGGTGTTCG
AGTTTGGCGGCGGTGGCGGTGAGTACTTCAAGTTCTCCAGCTTCACGCGC
AGATCCTCGGCTCCGTTATCTGTAGACTCATCCATAAGCTCGCGGTCGTC
GTCATTAGCCTCATTGGCACTGCCATTGTTTCGCTCTGATTTCACAATAC
GCTCCAGGCTACTGGTGGCATTTCCATTTCCCGCTGTGGTGCTGGGACTA
TGGTTCTCGTAGCGACTGGACTGTGGCGATGCGCGTTCGGAGTGCATGGT
GTCGGCCTCGGTGGGCGCCGTGGAGGAGGCGCTGGACGAGGGACGGTGGT
ACGGCGGCTTGTTGATGGGGCTGGGACACTCGGAGGACTTGGAGCCATCT
CGCAGGACGGAACCGCGCTGTTCCTGCTCGGAATACGGACTGCGGACTAT
AGCCCTCCTG

BS08268.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31666-PD 1815 CG31666-RD 975..1815 857..17 4155 99.7 Minus
CG31666-PA 1815 CG31666-RA 975..1815 857..17 4155 99.7 Minus
CG31666-PC 1815 CG31666-RC 975..1815 857..17 4155 99.7 Minus
CG31666-PB 2385 CG31666-RB 975..1678 857..154 3470 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
chinmo-RG 6089 CG31666-RG 2781..3621 857..17 4175 99.8 Minus
chinmo-RF 5037 CG31666-RF 1729..2569 857..17 4175 99.8 Minus
chinmo-RE 6320 CG31666-RE 3012..3852 857..17 4175 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1695649..1696149 517..17 2505 100 Minus
2L 23513712 2L 1695185..1695376 857..666 960 100 Minus
2L 23513712 2L 1695435..1695586 669..518 730 98.7 Minus
Blast to na_te.dros performed on 2015-02-12 11:45:26 has no hits.

BS08268.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:07 Download gff for BS08268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31666-PA 972..1815 17..860 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:33 Download gff for BS08268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31666-PC 972..1815 17..860 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:33:17 Download gff for BS08268.3prime
Subject Subject Range Query Range Percent Splice Strand
chinmo-RE 3009..3857 13..860 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:57:36 Download gff for BS08268.3prime
Subject Subject Range Query Range Percent Splice Strand
chinmo-RE 3009..3857 13..860 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:57:36 Download gff for BS08268.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1695182..1695376 666..860 99 -> Minus
2L 1695439..1695586 518..665 98 -> Minus
2L 1695649..1696154 13..517 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:33:17 Download gff for BS08268.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1695182..1695376 666..860 99 -> Minus
arm_2L 1695439..1695586 518..665 98 -> Minus
arm_2L 1695649..1696154 13..517 99   Minus

BS08268.5prime Sequence

947 bp (820 high quality bases) assembled on 2006-01-10

> BS08268.5prime
GAAGTTATCAGTCGACATGGATCCGCAGCAGCAGTTCTGCCTCAAATGGA
ACAGTTTCTCGTCTAACTTGGCAATAACATTCTCCAATCTGTTCAAATCG
GATCTACTGGCCGATGTCATATTATCCTGCGATGGCGTAGTATTCAAAGC
CCACAAACTTATATTGGCGGCCTGCTCAAAGAAGTTCGCCGATCTGTTTG
AGAACACGCCCACAAATGGCCAGTGCGTCATCATACTGGAGGCGACCACG
CCGGACAACATGGCCGCTCTGCTGGAGTTCATGTACAAAGGCGAGGTCCA
CGTCTCCCAGGAGGCGCTCAACAGTTTCCTCAAGTCCGCCGAGAGTTTGC
AGGTCAAAGGTCTGTCCACGGAAACGGGACGTCTGGCGGCGCAGCAGGCA
CAACAACACATGGGCGACCTGTCGCCACTTGACTCGCCGACGGGCAGGCG
GAGCGTAAGGAACAGCCTGAGCGGCGGTAGCAGCAGCATCGTTCCCGGCG
GAGTCGGAATCGGTCTGGGAGGAGGCGCAACGGGAGCCAACTCTATGTCC
GGCATGGGCATTGGCAACGGATTGAGCTTGGCCGGTATGGCAGCTGGCGG
AGGAATGGCGGCGGCTGCAAATGCGGCGGCCAGTAGCCTGAGCACCCTAG
CGGCCAGCGCGAATATCGTTGACAGATGCGGCAGTGCTGGCGCCAACATA
ATCAGCGGATCGGCTGCAGGGATTGGCGGCTCCCATAGCGGGGGAGCGGG
TAATGGCAGCGGCACAGTTGGAATCGGTGGCAACGGTGTCGGCAGTGGTG
GCGGCAACAATGGACCCATTAGCCTGGGAAGCGGCGCGGGCGCTGCTCAC
CATCTGGGCGGATCCACTGGCATCTTGAAGCANGAATGCGACTCCCTGAT
GCATCCGGGTGGCAGTAGTTCCTCTTTCCGGAATGGGCTACACCCAT

BS08268.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31666-PD 1815 CG31666-RD 1..910 17..926 4456 99.5 Plus
CG31666-PA 1815 CG31666-RA 1..910 17..926 4456 99.5 Plus
CG31666-PB 2385 CG31666-RB 1..910 17..926 4456 99.5 Plus
CG31666-PC 1815 CG31666-RC 1..910 17..926 4456 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
chinmo-RG 6089 CG31666-RG 1806..2736 16..947 4579 99.5 Plus
chinmo-RF 5037 CG31666-RF 754..1684 16..947 4579 99.5 Plus
chinmo-RE 6320 CG31666-RE 2037..2967 16..947 4579 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1694542..1695140 348..947 2894 99.2 Plus
2L 23513712 2L 1694223..1694443 134..354 1105 100 Plus
2L 23513712 2L 1690637..1690756 16..135 600 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:05:38 has no hits.

BS08268.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:08 Download gff for BS08268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31666-PB 1..930 17..947 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:34 Download gff for BS08268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31666-PC 1..930 17..947 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:01 Download gff for BS08268.5prime
Subject Subject Range Query Range Percent Splice Strand
chinmo-RE 2037..2967 16..947 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:01 Download gff for BS08268.5prime
Subject Subject Range Query Range Percent Splice Strand
chinmo-RE 2037..2967 16..947 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:01 Download gff for BS08268.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1690637..1690755 16..134 100 -> Plus
2L 1694224..1694441 135..352 100 -> Plus
2L 1694547..1695140 353..947 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:01 Download gff for BS08268.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1690637..1690755 16..134 100 -> Plus
arm_2L 1694224..1694441 135..352 100 -> Plus
arm_2L 1694547..1695140 353..947 99   Plus

BS08268.complete Sequence

1847 bp assembled on 2008-08-15

GenBank Submission: KX805445

> BS08268.complete
GAAGTTATCAGTCGACATGGATCCGCAGCAGCAGTTCTGCCTCAAATGGA
ACAGTTTCTCGTCTAACTTGGCAATAACATTCTCCAATCTGTTCAAATCG
GATCTACTGGCCGATGTCATATTATCCTGCGATGGCGTAGTATTCAAAGC
CCACAAACTTATATTGGCGGCCTGCTCAAAGAAGTTCGCCGATCTGTTTG
AGAACACGCCCACAAATGGCCAGTGCGTCATCATACTGGAGGCGACCACG
CCGGACAACATGGCCGCTCTGCTGGAGTTCATGTACAAAGGCGAGGTCCA
CGTCTCCCAGGAGGCGCTCAACAGTTTCCTCAAGTCCGCCGAGAGTTTGC
AGGTCAAAGGTCTGTCCACGGAAACGGGACGTCTGGCGGCGCAGCAGGCA
CAACAACACATGGGCGACCTGTCGCCACTTGACTCGCCGACGGGCAGGCG
GAGCGTAAGGAACAGCCTGAGCGGCGGTAGCAGCAGCATCGTTCCCGGCG
GAGTCGGAATCGGTCTGGGAGGAGGCGCAACGGGAGCCAACTCTATGTCC
GGCATGGGCATTGGCAACGGATTGAGCTTGGCCGGTATGGCAGCTGGCGG
AGGAATGGCGGCGGCTGCAAATGCGGCGGCCAGTAGCCTGAGCACCCTAG
CGGCCAGCGCGAATATCGTTGACAGATGCGGCAGTGCTGGCGCCAACATA
ATCAGCGGATCGGCTGCAGGGATTGGCGGCTCCCATAGCGGGGGAGCGGG
TAATGGCAGCGGCACAGTTGGAATCGGTGGCAACGGTGTCGGCAGTGGTG
GCGGCAACAATGGACCCATTAGCCTGGGAAGCGGCGCGGGCGCTGCTCAC
CATCTGGGCGGATCCACTGGCATCTTGAAGCAGGAATGCGACTCCCTGAT
GCATCCGGGTGGCAGTAGTTCCTCTTCCGGAATGGGCTACACCCATGTGC
CGCCCATCTACCGGCCTATTAACTACGAACCTCCGCGCAAGAGGGCTATA
GTCCGCAGTCCGTATTCCGAGCAGGAACAGCGCGGTTCCGTCCTGCGAGA
TGGCTCCAAGTCCTCCGAGTGTCCCAGCCCCATCAACAAGCCGCCGTACC
ACCGTCCCTCGTCCAGCGCCTCCTCCACGGCGCCCACCGAGGCCGACACC
ATGCACTCCGAACGCGCATCGCCACAGTCCAGTCGCTACGAGAACCATAG
TCCCAGCACCACAGCGGGAAATGGAAATGCCACCAGTAGCCTGGAGCGTA
TTGTGAAATCAGAGCGAAACAATGGCAGTGCCAATGAGGCTAATGACGAC
GACCGCGAGCTTATGGATGAGTCTACAGATAACGGAGCCGAGGATCTGCG
CGTGAAGCTGGAGAACTTGAAGTACTCACCGCCACCGCCGCCAAACTCGA
ACACCTCGTCGACCACACCGAATACGCTGCTGGAGAACCTGAAGGCGGAC
GGAACGCTGTCCAGTAACCTGGCCGCGTCGATTGCGCCGGCGGACATGTT
GAACGTATGGAACGCCACCAAGATGAACAACAAGAACAGCGTGAACACGG
CCGACGGTAAGAAGCTGAAGTGTCTCTACTGCGATCGTCTGTACGGATAC
GAGACGAATCTGCGGGCGCATATCCGGCAGCGTCATCAGGGCATCCGAGT
GCCATGTCCCTTCTGCGAGCGGACCTTCACGCGAAACAACACGGTGCGCC
GTCACATTGCCAGGGAGCACAAGCAGGAAATCGGATTGGCGGCGGGTGCA
ACAATTGCTCCAGCACACTTGGCAGCGGCAGCTGCAGCATCAGCAGCGGC
TACAGCGGCAGCCAGCAATCATTCACCATAGAAGCTTTCTAGACCAT

BS08268.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
chinmo-RG 1815 CG31666-PG 1..1815 17..1831 9000 99.7 Plus
chinmo-RF 2523 CG31666-PF 1..1815 17..1831 9000 99.7 Plus
chinmo-RE 2523 CG31666-PE 1..1815 17..1831 9000 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
chinmo-RG 6089 CG31666-RG 1806..3621 16..1831 9005 99.7 Plus
chinmo-RF 5037 CG31666-RF 754..2569 16..1831 9005 99.7 Plus
chinmo-RE 6320 CG31666-RE 2037..3852 16..1831 9005 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1694542..1695376 348..1182 4130 99.6 Plus
2L 23513712 2L 1695649..1696149 1331..1831 2505 100 Plus
2L 23513712 2L 1694223..1694443 134..354 1105 100 Plus
2L 23513712 2L 1695435..1695586 1179..1330 730 98.7 Plus
2L 23513712 2L 1690637..1690756 16..135 600 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:26:40 has no hits.

BS08268.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:19:58 Download gff for BS08268.complete
Subject Subject Range Query Range Percent Splice Strand
chinmo-RC 754..2574 16..1835 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:41 Download gff for BS08268.complete
Subject Subject Range Query Range Percent Splice Strand
chinmo-RE 2038..3852 17..1831 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:37 Download gff for BS08268.complete
Subject Subject Range Query Range Percent Splice Strand
chinmo-RC 755..2569 17..1831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:57 Download gff for BS08268.complete
Subject Subject Range Query Range Percent Splice Strand
chinmo-RE 2038..3852 17..1831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:57 Download gff for BS08268.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1690638..1690755 17..134 100 -> Plus
2L 1694224..1694441 135..352 100 -> Plus
2L 1694547..1695376 353..1182 99 -> Plus
2L 1695439..1695586 1183..1330 98 -> Plus
2L 1695649..1696149 1331..1831 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:41 Download gff for BS08268.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1690638..1690755 17..134 100 -> Plus
arm_2L 1694224..1694441 135..352 100 -> Plus
arm_2L 1694547..1695376 353..1182 99 -> Plus
arm_2L 1695439..1695586 1183..1330 98 -> Plus
arm_2L 1695649..1696149 1331..1831 100   Plus

BS08268.pep Sequence

Translation from 16 to 1830

> BS08268.pep
MDPQQQFCLKWNSFSSNLAITFSNLFKSDLLADVILSCDGVVFKAHKLIL
AACSKKFADLFENTPTNGQCVIILEATTPDNMAALLEFMYKGEVHVSQEA
LNSFLKSAESLQVKGLSTETGRLAAQQAQQHMGDLSPLDSPTGRRSVRNS
LSGGSSSIVPGGVGIGLGGGATGANSMSGMGIGNGLSLAGMAAGGGMAAA
ANAAASSLSTLAASANIVDRCGSAGANIISGSAAGIGGSHSGGAGNGSGT
VGIGGNGVGSGGGNNGPISLGSGAGAAHHLGGSTGILKQECDSLMHPGGS
SSSSGMGYTHVPPIYRPINYEPPRKRAIVRSPYSEQEQRGSVLRDGSKSS
ECPSPINKPPYHRPSSSASSTAPTEADTMHSERASPQSSRYENHSPSTTA
GNGNATSSLERIVKSERNNGSANEANDDDRELMDESTDNGAEDLRVKLEN
LKYSPPPPPNSNTSSTTPNTLLENLKADGTLSSNLAASIAPADMLNVWNA
TKMNNKNSVNTADGKKLKCLYCDRLYGYETNLRAHIRQRHQGIRVPCPFC
ERTFTRNNTVRRHIAREHKQEIGLAAGATIAPAHLAAAAAASAAATAAAS
NHSP*

BS08268.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
chinmo-PG 604 CG31666-PG 1..604 1..604 3113 100 Plus
chinmo-PF 840 CG31666-PF 1..604 1..604 3113 100 Plus
chinmo-PE 840 CG31666-PE 1..604 1..604 3113 100 Plus
chinmo-PA 604 CG31666-PA 1..604 1..604 3113 100 Plus
chinmo-PD 604 CG31666-PD 1..604 1..604 3113 100 Plus