Clone Sequence Records
BS08302.3prime Sequence
953 bp (851 high quality bases) assembled on 2006-01-10
> BS08302.3prime
ATGGTCTAGAAAGCTTCGTCACAGCTCCTGCACCTCGCCGCCAACGCCCT
GCTTGCCCTGAGCCTGCCGCTCCAGCTTCTCCTGCTCCATGTTCTCCAGC
TGGGCGAGGGTCAGCAGCGAGATGCCCAGCTGGTCCTCACGTGTGAACGG
TTGCGCCATGCGCCGCAGCCAACGACGGGCCAGCTGGACGGCCTCCTCCG
TGCTCAGGTTGCAGAAGCTGTCCACCAGATGCTCTTGGATCCACTTGGGC
AAACGCGACCTCTTGTCGTGGCGCGAAAAGCGCTTGTCCGCGAAGATCAT
GATGCCGTAGTCCGTCTTGCCGCGCAGTGCACGACCCACGCACTGGGCAG
CATGACGCATGGCGTCGAAGGTCAGGAAGTCATTCTCACGTATCTGAAAC
TGATCCCGCAGGTAGTCCAACCGGGCCTTCAGAATACGCGACTGCGTGTA
CACGTAGGGGATGCCGAACATGAGCACCGCGCGACCATAATGATGGTCGA
AATCCACACCCTCGGAGACCTTGCCACGCGCCACAGCCAACAGCACTGCT
CCACGACCACAATCGCAGGCCTTAACATAGTTCATCAGGGCGTAGCTGGT
CTCGGCATTGTCCTGAGTCTCAATGAATAGAAGCTTGTAGCGAAGCAGGG
TATCGACGATTCCCTGATCATACCAAGAGGCCACCACAGACTCCAAGTAC
AAATAGGAGGTGAAGAAGCATACAATACCGTCGGGCACTGTCTTTGCCAC
CTCCACCAAAAGCTGGCCATAGTTTCGAATGACGGCGGTGTCTTCTCGCG
TCTCGAACTTGGACGAAATGGTCACCTGGTCGTTGCCCTTCGATACAATC
ATAGGAAGAAGACACGGACGGGCTAGTGTCATGGTAAAGCTGCTCATCAC
CACTGGATCGAAATCGAGTATCTTCGGGTACATGTCCATGGGTGACAATG
TGC
BS08302.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9433-PA | 2310 | Xpd-RA | 1376..2310 | 953..19 | 4675 | 100 | Minus |
| CG9433-PB | 2238 | Xpd-RB | 1304..2238 | 953..19 | 4675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Xpd-RA | 2797 | CG9433-RA | 1437..2371 | 953..19 | 4675 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:24:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21173525..21174078 | 572..19 | 2770 | 100 | Minus |
| 2R | 25286936 | 2R | 21172888..21173168 | 850..570 | 1405 | 100 | Minus |
| 2R | 25286936 | 2R | 21172722..21172825 | 953..850 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 14:24:19 has no hits.
BS08302.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:09 Download gff for
BS08302.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xpd-PB | 1304..2238 | 19..953 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:36 Download gff for
BS08302.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9433-PB | 1304..2238 | 19..953 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:55:35 Download gff for
BS08302.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xpd-RA | 1437..2373 | 16..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:36:11 Download gff for
BS08302.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xpd-RA | 1437..2373 | 16..953 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:36:11 Download gff for
BS08302.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21172722..21172825 | 850..953 | 100 | -> | Minus |
| 2R | 21172889..21173167 | 571..849 | 100 | -> | Minus |
| 2R | 21173527..21174080 | 16..570 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:55:35 Download gff for
BS08302.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17060227..17060330 | 850..953 | 100 | -> | Minus |
| arm_2R | 17060394..17060672 | 571..849 | 100 | -> | Minus |
| arm_2R | 17061032..17061585 | 16..570 | 99 | | Minus |
BS08302.5prime Sequence
910 bp (767 high quality bases) assembled on 2006-01-10
> BS08302.5prime
GAAGTTATCAGTCGACATGCTGGAACTTAAGCGTAGCCTGGACGCCAAGG
GCCACTGCCTGTTGGAGATGCCCTCGGGAACGGGCAAGACGGCCACGCTG
CTCTCCCTGATCGTTGCCTACATGGTGGAGCATCCGGAAACGGTGCGCAA
GCTCATCTACTGCTCGCGTACTGTTCCGGAGATCGAGAAAGTGATCGCCG
AGCTGCAGAACCTGATGGTTTACTACGAGCGCCACTGCCCCAATCCACCA
CCCTTCACCGGTCTGGTGCTCAGCTCTAGGAAGAACATGTGCATCCATCC
GGAGGTCAGTAAGGAGCGCGAGGGCAAGGCCGTGGACGGTAAATGTTACG
GACTCACTGCCAGCTACATTCGCGAACGGCACGAGATGGACACCGAGACG
CCCATTTGCCAGTACTTTGAGGGATTTAGCCTGGAAGGCAAGGAGTCCAC
ATTGCCGGTCGGCGTCTACAGCATCGATGATCTTAAGGAATACGGTCGGT
CGCGCAACTGGTGTCCCTACTTTTTGGCTCGCTATGCTATTGCCCATGCT
CACATTGTGGTATACAGTTACCACTATCTATTAGATCCGAAAATTGCCCA
GGTGGTATCTAAGGAAATGAGCCGCGAGTCCTGTGTGGTCTTTGATGAGG
CGCACAACATCGACAACGTTTGCATCGATTCGATGAGTGTGAAGATCAAC
AGACGCACCGTGGAGCGAAGCACGAATGCTTTGAACCATCTAACTAAACT
GGTTCAGGACATTCGCGAAGAGGACACAAATCGTCTGAACGAGGAGTATC
AGCGCATGGTGCAGGGTCTGAAGGATGCCAGTGTGCAGCGCGACACGGAC
ATGATCCTGGCCAATCCGGTCCTGCCAAACGATGTCCTAACCGAGGTGGT
GCCCGGAAAT
BS08302.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9433-PA | 2310 | Xpd-RA | 71..966 | 15..910 | 4480 | 100 | Plus |
| CG9433-PB | 2238 | Xpd-RB | 1..894 | 17..910 | 4470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Xpd-RA | 2797 | CG9433-RA | 132..1027 | 15..910 | 4480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21171186..21171579 | 15..408 | 1970 | 100 | Plus |
| 2R | 25286936 | 2R | 21171824..21172044 | 539..759 | 1105 | 100 | Plus |
| 2R | 25286936 | 2R | 21172104..21172254 | 760..910 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 21171631..21171761 | 408..538 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:46:29 has no hits.
BS08302.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:10 Download gff for
BS08302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9433-PA | 64..966 | 6..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:37 Download gff for
BS08302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9433-PA | 64..966 | 6..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:21:07 Download gff for
BS08302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xpd-RA | 125..1027 | 6..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:32:11 Download gff for
BS08302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xpd-RA | 125..1027 | 6..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:32:11 Download gff for
BS08302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21171631..21171761 | 408..538 | 100 | -> | Plus |
| 2R | 21171824..21172044 | 539..759 | 100 | -> | Plus |
| 2R | 21172104..21172254 | 760..910 | 100 | | Plus |
| 2R | 21171179..21171578 | 6..407 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:21:07 Download gff for
BS08302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17059136..17059266 | 408..538 | 100 | -> | Plus |
| arm_2R | 17058684..17059083 | 6..407 | 99 | -> | Plus |
| arm_2R | 17059329..17059549 | 539..759 | 100 | -> | Plus |
| arm_2R | 17059609..17059759 | 760..910 | 100 | | Plus |
BS08302.complete Sequence
2272 bp assembled on 2010-12-13
GenBank Submission: KX802756
> BS08302.complete
GAAGTTATCAGTCGACATGCTGGAACTTAAGCGTAGCCTGGACGCCAAGG
GCCACTGCCTGTTGGAGATGCCCTCGGGAACGGGCAAGACGGCCACGCTG
CTCTCCCTGATCGTTGCCTACATGGTGGAGCATCCGGAAACGGTGCGCAA
GCTCATCTACTGCTCGCGTACTGTTCCGGAGATCGAGAAAGTGATCGCCG
AGCTGCAGAACCTGATGGTTTACTACGAGCGCCACTGCCCCAATCCACCA
CCCTTCACCGGTCTGGTGCTCAGCTCTAGGAAGAACATGTGCATCCATCC
GGAGGTCAGTAAGGAGCGCGAGGGCAAGGCCGTGGACGGTAAATGTTACG
GACTCACTGCCAGCTACATTCGCGAACGGCACGAGATGGACACCGAGACG
CCCATTTGCCAGTACTTTGAGGGATTTAGCCTGGAAGGCAAGGAGTCCAC
ATTGCCGGTCGGCGTCTACAGCATCGATGATCTTAAGGAATACGGTCGGT
CGCGCAACTGGTGTCCCTACTTTTTGGCTCGCTATGCTATTGCCCATGCT
CACATTGTGGTATACAGTTACCACTATCTATTAGATCCGAAAATTGCCCA
GGTGGTATCTAAGGAAATGAGCCGCGAGTCCTGTGTGGTCTTTGATGAGG
CGCACAACATCGACAACGTTTGCATCGATTCGATGAGTGTGAAGATCAAC
AGACGCACCGTGGAGCGAAGCACGAATGCTTTGAACCATCTAACTAAACT
GGTTCAGGACATTCGCGAAGAGGACACAAATCGTCTGAACGAGGAGTATC
AGCGCATGGTGCAGGGTCTGAAGGATGCCAGTGTGCAGCGCGACACGGAC
ATGATCCTGGCCAATCCGGTCCTGCCAAACGATGTCCTAACCGAGGTGGT
GCCCGGAAATATTAGGAACGCCGATCATTTCCTTAGCTTTCTGCGTCGAT
TCATCGAGTATATAAAGACAAGACTGCGCGTTCATCATGTCGTTCAGGAG
TCACCTGCGGGCTTCCTTAAGGATATTTCCTCCAAGATTTGTATAGAGAG
AAAGCCTCTGCGTTTTTGTGCTGAGCGCCTGTCCAGTCTGCTGCGCACGC
TTGAGATCAGTGATTTGACGGAGTATGGAGCCCTTACACTGATTACACAC
TTTGCCACCCTGGTGTCCACCTACACAAAGGGCTTCACAATCATTATAGA
ACCCTTCGACGATAAAACGCCGACTGTTTCGAATCCCATTTTGCACTTTA
GTTGCCTAGACTCTTCCATTGCCATGGCTCCGGTATTTTCGAGATTTCAA
ACCGTGGTCATCACTTCTGGCACATTGTCACCCATGGACATGTACCCGAA
GATACTCGATTTCGATCCAGTGGTGATGAGCAGCTTTACCATGACACTAG
CCCGTCCGTGTCTTCTTCCTATGATTGTATCGAAGGGCAACGACCAGGTG
ACCATTTCGTCCAAGTTCGAGACGCGAGAAGACACCGCCGTCATTCGAAA
CTATGGCCAGCTTTTGGTGGAGGTGGCAAAGACAGTGCCCGACGGTATTG
TATGCTTCTTCACCTCCTATTTGTACTTGGAGTCTGTGGTGGCCTCTTGG
TATGATCAGGGAATCGTCGATACCCTGCTTCGCTACAAGCTTCTATTCAT
TGAGACTCAGGACAATGCCGAGACCAGCTACGCCCTGATGAACTATGTTA
AGGCCTGCGATTGTGGTCGTGGAGCAGTGCTGTTGGCTGTGGCGCGTGGC
AAGGTCTCCGAGGGTGTGGATTTCGACCATCATTATGGTCGCGCGGTGCT
CATGTTCGGCATCCCCTACGTGTACACGCAGTCGCGTATTCTGAAGGCCC
GGTTGGACTACCTGCGGGATCAGTTTCAGATACGTGAGAATGACTTCCTG
ACCTTCGACGCCATGCGTCATGCTGCCCAGTGCGTGGGTCGTGCACTGCG
CGGCAAGACGGACTACGGCATCATGATCTTCGCGGACAAGCGCTTTTCGC
GCCACGACAAGAGGTCGCGTTTGCCCAAGTGGATCCAAGAGCATCTGGTG
GACAGCTTCTGCAACCTGAGCACGGAGGAGGCCGTCCAGCTGGCCCGTCG
TTGGCTGCGGCGCATGGCGCAACCGTTCACACGTGAGGACCAGCTGGGCA
TCTCGCTGCTGACCCTCGCCCAGCTGGAGAACATGGAGCAGGAGAAGCTG
GAGCGGCAGGCTCAGGGCAAGCAGGGCGTTGGCGGCGAGGTGCAGGAGCT
GTGACGAAGCTTTCTAGACCAT
BS08302.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:42:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Xpd-RA | 2310 | CG9433-PA | 71..2310 | 15..2254 | 11200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Xpd-RA | 2797 | CG9433-RA | 132..2371 | 15..2254 | 11200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21173525..21174078 | 1701..2254 | 2770 | 100 | Plus |
| 2R | 25286936 | 2R | 21171186..21171579 | 15..408 | 1970 | 100 | Plus |
| 2R | 25286936 | 2R | 21172104..21172485 | 760..1141 | 1910 | 100 | Plus |
| 2R | 25286936 | 2R | 21172543..21172825 | 1141..1423 | 1415 | 100 | Plus |
| 2R | 25286936 | 2R | 21172888..21173168 | 1423..1703 | 1405 | 100 | Plus |
| 2R | 25286936 | 2R | 21171824..21172044 | 539..759 | 1105 | 100 | Plus |
| 2R | 25286936 | 2R | 21171631..21171761 | 408..538 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:42:22 has no hits.
BS08302.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:54:59 Download gff for
BS08302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xpd-RC | 130..2368 | 17..2256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:29 Download gff for
BS08302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xpd-RA | 134..2372 | 17..2256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:32 Download gff for
BS08302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xpd-RA | 134..2372 | 17..2256 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:32 Download gff for
BS08302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21171631..21171761 | 408..538 | 100 | -> | Plus |
| 2R | 21171824..21172044 | 539..759 | 100 | -> | Plus |
| 2R | 21171188..21171578 | 17..407 | 100 | -> | Plus |
| 2R | 21172104..21172485 | 760..1141 | 100 | -> | Plus |
| 2R | 21172544..21172825 | 1142..1423 | 100 | -> | Plus |
| 2R | 21172889..21173167 | 1424..1702 | 100 | -> | Plus |
| 2R | 21173527..21174079 | 1703..2256 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:29 Download gff for
BS08302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17058693..17059083 | 17..407 | 100 | -> | Plus |
| arm_2R | 17059136..17059266 | 408..538 | 100 | -> | Plus |
| arm_2R | 17059329..17059549 | 539..759 | 100 | -> | Plus |
| arm_2R | 17059609..17059990 | 760..1141 | 100 | -> | Plus |
| arm_2R | 17060049..17060330 | 1142..1423 | 100 | -> | Plus |
| arm_2R | 17060394..17060672 | 1424..1702 | 100 | -> | Plus |
| arm_2R | 17061032..17061584 | 1703..2256 | 99 | | Plus |
BS08302.pep Sequence
Translation from 16 to 2253
> BS08302.pep
MLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYMVEHPETVRKLIYCS
RTVPEIEKVIAELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKE
REGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGV
YSIDDLKEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKE
MSRESCVVFDEAHNIDNVCIDSMSVKINRRTVERSTNALNHLTKLVQDIR
EEDTNRLNEEYQRMVQGLKDASVQRDTDMILANPVLPNDVLTEVVPGNIR
NADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKDISSKICIERKPLRF
CAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDK
TPTVSNPILHFSCLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFD
PVVMSSFTMTLARPCLLPMIVSKGNDQVTISSKFETREDTAVIRNYGQLL
VEVAKTVPDGIVCFFTSYLYLESVVASWYDQGIVDTLLRYKLLFIETQDN
AETSYALMNYVKACDCGRGAVLLAVARGKVSEGVDFDHHYGRAVLMFGIP
YVYTQSRILKARLDYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDY
GIMIFADKRFSRHDKRSRLPKWIQEHLVDSFCNLSTEEAVQLARRWLRRM
AQPFTREDQLGISLLTLAQLENMEQEKLERQAQGKQGVGGEVQEL*
BS08302.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Xpd-PA | 769 | CG9433-PA | 25..769 | 1..745 | 3859 | 100 | Plus |
| CG4078-PB | 985 | CG4078-PB | 30..730 | 13..679 | 501 | 24.5 | Plus |
| CG4078-PA | 985 | CG4078-PA | 30..730 | 13..679 | 501 | 24.5 | Plus |
| CG11403-PA | 861 | CG11403-PA | 540..840 | 375..680 | 355 | 30.8 | Plus |
