Clone Sequence Records
BS08311.3prime Sequence
861 bp (844 high quality bases) assembled on 2006-01-10
> BS08311.3prime
ATGGTCTAGAAAGCTTCGCTAGTCGATCTCCACATTCTCGTCAACATCCT
CCGCCGCCGAGTGAACGCTCTCCGCTCCGCTCTCGACGCTCATCATCTGG
CCATTGGGACTGGGACACGGCGTTCGCTGGGGACGCACTGCACCCGGGAT
GGGGATGGGAACTGGCGATGAGGACGCCGAGGATGCAGTCACAAAGCTGG
AACTCTGGGTTGGTGGCGGTATGGGTTGCGGCACCTTGTGTTGCGGGTAG
AAGTACGGGAATGGCATCTGCATCTGTGGCAGCGGAAGTCCGCCGTAGGC
CAGCTGCAGCTGATGGCGGTAGATGTTGATCAGGGCGGGATCGAGGCCGT
GTCCAGCACCGGGAGCAGCCATGTGAGCGTAGGTGGTGCTGCCATCCTCT
CGCACCAAGACTTGGACGGGAACCCTCTTGCTGGCACCCAAAAGGGCGGC
CTCGTGCTGCTGGATCTGCTTGCGCTTGGTCTTGTAGCGGCGGTTTTGGA
ACCAGATCTTCACCTGGGTCTCCGTCAGGCGCAGGCTCTTGGCCATCTCG
CTGCGTTCCGGACCGGACAAGTAGCGCTGTTGGGCAAAGCGGCGCTCCAA
CTCGAAGACCTGGGCGTGGCTGAAGGCGGCACGCGACCGCTTCTTGCGGC
TCAATCCACTGCCGTCGTGGGATAGCGGCGACTCCGAGGGGGAACTGCTC
AATGGCGGTGGTGAGTCGCAGTCGGAATCGTTGCTGGTGCAGCGTCTCAT
GTCCAAAGGAGCAGCGAGGGTGGATCCAAAATAGGCCAATTTGCGCTGCA
TGTAGTCGGCGGCACTGGAGTTCGATGTGCCCGTTGCCTGGTGATGGTGG
TTATTGTTGTC
BS08311.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7902-PA | 1149 | bap-RA | 307..1149 | 861..19 | 4215 | 100 | Minus |
CG1897-PA | 1548 | Dr-RA | 1372..1415 | 534..491 | 145 | 93.1 | Minus |
CG6172-PB | 1734 | vnd-RB | 1309..1367 | 531..473 | 145 | 89.8 | Minus |
CG6172-PA | 2172 | vnd-RA | 1747..1805 | 531..473 | 145 | 89.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:25:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bap-RA | 1449 | CG7902-RA | 442..1284 | 861..19 | 4215 | 100 | Minus |
vnd-RB | 3412 | CG6172-RB | 2147..2205 | 531..473 | 205 | 89.8 | Minus |
vnd-RA | 3033 | CG6172-RA | 2100..2158 | 531..473 | 205 | 89.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21389580..21390284 | 723..19 | 3525 | 100 | Minus |
3R | 32079331 | 3R | 21389321..21389459 | 861..723 | 695 | 100 | Minus |
X | 23542271 | X | 596886..596944 | 531..473 | 205 | 89.8 | Minus |
Blast to na_te.dros performed on 2015-02-03 09:25:45 has no hits.
BS08311.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:16 Download gff for
BS08311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-PA | 307..1149 | 19..861 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:46 Download gff for
BS08311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7902-PA | 307..1149 | 19..861 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:46:34 Download gff for
BS08311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-RA | 442..1284 | 19..861 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 10:00:33 Download gff for
BS08311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-RA | 442..1284 | 19..861 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 10:00:33 Download gff for
BS08311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21389321..21389459 | 723..861 | 100 | -> | Minus |
3R | 21389581..21390284 | 19..722 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:46:34 Download gff for
BS08311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17215043..17215181 | 723..861 | 100 | -> | Minus |
arm_3R | 17215303..17216006 | 19..722 | 100 | | Minus |
BS08311.5prime Sequence
471 bp (330 high quality bases) assembled on 2006-01-10
> BS08311.5prime
GAAGTTATCAGTCGACATGCTGAATATGGAAAGCGCGGGTGTCAGTGCTG
CGATGGCGGGTCTGAGCAAATCGCTCACCACGCCCTTCTCCATCAACGAT
ATCCTAACGCGCAGCAATCCGGAAACACGTCGCATGTCCAGCGTGGACTC
CGAACCGGAACCGGAAAAGCTGAAACCCTCCTCCGATCGCGAGCGATCGA
TCTCCAAGTCGCCGCCACTCTGCTGCCGAGATCTCGGCCTCTACAAGCTG
ACCCAACCCAAGGAGATCCAACCAAGTGCCAGGCAACCCAGCAACTATCT
GCAGTATTATGCGGCGGCGATGGACAACAATAACCACCATCACCAGGCAA
CGGGCACATCGAACTCCAGTGCCGCCGACTACATGCAGCGCAAATTGGCC
TATTTTGGATCCACCCTCGCTGCTCCTTTGGACATGAGACGCTGCACCAG
CAACGATTCCGACTGCGACTC
BS08311.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7902-PA | 1149 | bap-RA | 1..455 | 17..471 | 2275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bap-RA | 1449 | CG7902-RA | 136..590 | 17..471 | 2275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:37:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21389015..21389459 | 17..461 | 2225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:37:49 has no hits.
BS08311.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:17 Download gff for
BS08311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-PA | 1..455 | 17..471 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:48 Download gff for
BS08311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7902-PA | 1..455 | 17..471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:25:45 Download gff for
BS08311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-RA | 136..590 | 17..471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:18:42 Download gff for
BS08311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-RA | 136..590 | 17..471 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:18:42 Download gff for
BS08311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21389015..21389459 | 17..461 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:25:45 Download gff for
BS08311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17214737..17215181 | 17..461 | 100 | | Plus |
BS08311.complete Sequence
1183 bp (1183 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636137
> BS08311.complete
GAAGTTATCAGTCGACATGCTGAATATGGAAAGCGCGGGTGTCAGTGCTG
CGATGGCGGGTCTGAGCAAATCGCTCACCACGCCCTTCTCCATCAACGAT
ATCCTAACGCGCAGCAATCCGGAAACACGTCGCATGTCCAGCGTGGACTC
CGAACCGGAACCGGAAAAGCTGAAACCCTCCTCCGATCGCGAGCGATCGA
TCTCCAAGTCGCCGCCACTCTGCTGCCGAGATCTCGGCCTCTACAAGCTG
ACCCAACCCAAGGAGATCCAACCAAGTGCCAGGCAACCCAGCAACTATCT
GCAGTATTATGCGGCGGCGATGGACAACAATAACCACCATCACCAGGCAA
CGGGCACATCGAACTCCAGTGCCGCCGACTACATGCAGCGCAAATTGGCC
TATTTTGGATCCACCCTCGCTGCTCCTTTGGACATGAGACGCTGCACCAG
CAACGATTCCGACTGCGACTCACCACCGCCATTGAGCAGTTCCCCCTCGG
AGTCGCCGCTATCCCACGACGGCAGTGGATTGAGCCGCAAGAAGCGGTCG
CGTGCCGCCTTCAGCCACGCCCAGGTCTTCGAGTTGGAGCGCCGCTTTGC
CCAACAGCGCTACTTGTCCGGTCCGGAACGCAGCGAGATGGCCAAGAGCC
TGCGCCTGACGGAGACCCAGGTGAAGATCTGGTTCCAAAACCGCCGCTAC
AAGACCAAGCGCAAGCAGATCCAGCAGCACGAGGCCGCCCTTTTGGGTGC
CAGCAAGAGGGTTCCCGTCCAAGTCTTGGTGCGAGAGGATGGCAGCACCA
CCTACGCTCACATGGCTGCTCCCGGTGCTGGACACGGCCTCGATCCCGCC
CTGATCAACATCTACCGCCATCAGCTGCAGCTGGCCTACGGCGGACTTCC
GCTGCCACAGATGCAGATGCCATTCCCGTACTTCTACCCGCAACACAAGG
TGCCGCAACCCATACCGCCACCAACCCAGAGTTCCAGCTTTGTGACTGCA
TCCTCGGCGTCCTCATCGCCAGTTCCCATCCCCATCCCGGGTGCAGTGCG
TCCCCAGCGAACGCCGTGTCCCAGTCCCAATGGCCAGATGATGAGCGTCG
AGAGCGGAGCGGAGAGCGTTCACTCGGCGGCGGAGGATGTTGACGAGAAT
GTGGAGATCGACTAGCGAAGCTTTCTAGACCAT
BS08311.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bap-RA | 1149 | CG7902-PA | 1..1149 | 17..1165 | 5745 | 100 | Plus |
vnd-RB | 1734 | CG6172-PB | 1309..1367 | 653..711 | 205 | 89.8 | Plus |
vnd-RA | 2172 | CG6172-PA | 1747..1805 | 653..711 | 205 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bap-RA | 1449 | CG7902-RA | 136..1284 | 17..1165 | 5745 | 100 | Plus |
vnd-RB | 3412 | CG6172-RB | 2147..2205 | 653..711 | 205 | 89.8 | Plus |
vnd-RA | 3033 | CG6172-RA | 2100..2158 | 653..711 | 205 | 89.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21389580..21390284 | 461..1165 | 3525 | 100 | Plus |
3R | 32079331 | 3R | 21389015..21389459 | 17..461 | 2225 | 100 | Plus |
X | 23542271 | X | 596886..596944 | 653..711 | 205 | 89.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:27:34 has no hits.
BS08311.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:36 Download gff for
BS08311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-RA | 1..1149 | 17..1165 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:37 Download gff for
BS08311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-RA | 133..1281 | 17..1165 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:42 Download gff for
BS08311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-RA | 136..1285 | 17..1167 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:36 Download gff for
BS08311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-RA | 133..1281 | 17..1165 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:04 Download gff for
BS08311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-RA | 136..1285 | 17..1167 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:04 Download gff for
BS08311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21389015..21389459 | 17..461 | 100 | -> | Plus |
3R | 21389581..21390285 | 462..1167 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:42 Download gff for
BS08311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17214737..17215181 | 17..461 | 100 | -> | Plus |
arm_3R | 17215303..17216007 | 462..1167 | 99 | | Plus |
BS08311.pep Sequence
Translation from 16 to 1164
> BS08311.pep
MLNMESAGVSAAMAGLSKSLTTPFSINDILTRSNPETRRMSSVDSEPEPE
KLKPSSDRERSISKSPPLCCRDLGLYKLTQPKEIQPSARQPSNYLQYYAA
AMDNNNHHHQATGTSNSSAADYMQRKLAYFGSTLAAPLDMRRCTSNDSDC
DSPPPLSSSPSESPLSHDGSGLSRKKRSRAAFSHAQVFELERRFAQQRYL
SGPERSEMAKSLRLTETQVKIWFQNRRYKTKRKQIQQHEAALLGASKRVP
VQVLVREDGSTTYAHMAAPGAGHGLDPALINIYRHQLQLAYGGLPLPQMQ
MPFPYFYPQHKVPQPIPPPTQSSSFVTASSASSSPVPIPIPGAVRPQRTP
CPSPNGQMMSVESGAESVHSAAEDVDENVEID*
BS08311.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bap-PA | 382 | CG7902-PA | 1..382 | 1..382 | 1985 | 100 | Plus |
Hmx-PD | 718 | CG43748-PD | 319..623 | 41..318 | 244 | 29.4 | Plus |
scro-PA | 468 | CG17594-PA | 113..358 | 21..274 | 239 | 30.8 | Plus |
Hmx-PE | 592 | CG43748-PE | 319..558 | 41..261 | 239 | 31.6 | Plus |
Hmx-PC | 592 | CG43748-PC | 319..558 | 41..261 | 239 | 31.6 | Plus |