Clone BS08311 Report

Search the DGRC for BS08311

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:83
Well:11
Vector:pDNR-Dual
Associated Gene/Transcriptbap-RA
Protein status:BS08311.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08311.3prime Sequence

861 bp (844 high quality bases) assembled on 2006-01-10

> BS08311.3prime
ATGGTCTAGAAAGCTTCGCTAGTCGATCTCCACATTCTCGTCAACATCCT
CCGCCGCCGAGTGAACGCTCTCCGCTCCGCTCTCGACGCTCATCATCTGG
CCATTGGGACTGGGACACGGCGTTCGCTGGGGACGCACTGCACCCGGGAT
GGGGATGGGAACTGGCGATGAGGACGCCGAGGATGCAGTCACAAAGCTGG
AACTCTGGGTTGGTGGCGGTATGGGTTGCGGCACCTTGTGTTGCGGGTAG
AAGTACGGGAATGGCATCTGCATCTGTGGCAGCGGAAGTCCGCCGTAGGC
CAGCTGCAGCTGATGGCGGTAGATGTTGATCAGGGCGGGATCGAGGCCGT
GTCCAGCACCGGGAGCAGCCATGTGAGCGTAGGTGGTGCTGCCATCCTCT
CGCACCAAGACTTGGACGGGAACCCTCTTGCTGGCACCCAAAAGGGCGGC
CTCGTGCTGCTGGATCTGCTTGCGCTTGGTCTTGTAGCGGCGGTTTTGGA
ACCAGATCTTCACCTGGGTCTCCGTCAGGCGCAGGCTCTTGGCCATCTCG
CTGCGTTCCGGACCGGACAAGTAGCGCTGTTGGGCAAAGCGGCGCTCCAA
CTCGAAGACCTGGGCGTGGCTGAAGGCGGCACGCGACCGCTTCTTGCGGC
TCAATCCACTGCCGTCGTGGGATAGCGGCGACTCCGAGGGGGAACTGCTC
AATGGCGGTGGTGAGTCGCAGTCGGAATCGTTGCTGGTGCAGCGTCTCAT
GTCCAAAGGAGCAGCGAGGGTGGATCCAAAATAGGCCAATTTGCGCTGCA
TGTAGTCGGCGGCACTGGAGTTCGATGTGCCCGTTGCCTGGTGATGGTGG
TTATTGTTGTC

BS08311.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7902-PA 1149 bap-RA 307..1149 861..19 4215 100 Minus
CG1897-PA 1548 Dr-RA 1372..1415 534..491 145 93.1 Minus
CG6172-PB 1734 vnd-RB 1309..1367 531..473 145 89.8 Minus
CG6172-PA 2172 vnd-RA 1747..1805 531..473 145 89.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
bap-RA 1449 CG7902-RA 442..1284 861..19 4215 100 Minus
vnd-RB 3412 CG6172-RB 2147..2205 531..473 205 89.8 Minus
vnd-RA 3033 CG6172-RA 2100..2158 531..473 205 89.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21389580..21390284 723..19 3525 100 Minus
3R 32079331 3R 21389321..21389459 861..723 695 100 Minus
X 23542271 X 596886..596944 531..473 205 89.8 Minus
Blast to na_te.dros performed on 2015-02-03 09:25:45 has no hits.

BS08311.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:16 Download gff for BS08311.3prime
Subject Subject Range Query Range Percent Splice Strand
bap-PA 307..1149 19..861 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:46 Download gff for BS08311.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7902-PA 307..1149 19..861 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:46:34 Download gff for BS08311.3prime
Subject Subject Range Query Range Percent Splice Strand
bap-RA 442..1284 19..861 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 10:00:33 Download gff for BS08311.3prime
Subject Subject Range Query Range Percent Splice Strand
bap-RA 442..1284 19..861 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 10:00:33 Download gff for BS08311.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21389321..21389459 723..861 100 -> Minus
3R 21389581..21390284 19..722 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:46:34 Download gff for BS08311.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17215043..17215181 723..861 100 -> Minus
arm_3R 17215303..17216006 19..722 100   Minus

BS08311.5prime Sequence

471 bp (330 high quality bases) assembled on 2006-01-10

> BS08311.5prime
GAAGTTATCAGTCGACATGCTGAATATGGAAAGCGCGGGTGTCAGTGCTG
CGATGGCGGGTCTGAGCAAATCGCTCACCACGCCCTTCTCCATCAACGAT
ATCCTAACGCGCAGCAATCCGGAAACACGTCGCATGTCCAGCGTGGACTC
CGAACCGGAACCGGAAAAGCTGAAACCCTCCTCCGATCGCGAGCGATCGA
TCTCCAAGTCGCCGCCACTCTGCTGCCGAGATCTCGGCCTCTACAAGCTG
ACCCAACCCAAGGAGATCCAACCAAGTGCCAGGCAACCCAGCAACTATCT
GCAGTATTATGCGGCGGCGATGGACAACAATAACCACCATCACCAGGCAA
CGGGCACATCGAACTCCAGTGCCGCCGACTACATGCAGCGCAAATTGGCC
TATTTTGGATCCACCCTCGCTGCTCCTTTGGACATGAGACGCTGCACCAG
CAACGATTCCGACTGCGACTC

BS08311.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7902-PA 1149 bap-RA 1..455 17..471 2275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
bap-RA 1449 CG7902-RA 136..590 17..471 2275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21389015..21389459 17..461 2225 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:37:49 has no hits.

BS08311.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:17 Download gff for BS08311.5prime
Subject Subject Range Query Range Percent Splice Strand
bap-PA 1..455 17..471 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:48 Download gff for BS08311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7902-PA 1..455 17..471 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:25:45 Download gff for BS08311.5prime
Subject Subject Range Query Range Percent Splice Strand
bap-RA 136..590 17..471 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:18:42 Download gff for BS08311.5prime
Subject Subject Range Query Range Percent Splice Strand
bap-RA 136..590 17..471 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:18:42 Download gff for BS08311.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21389015..21389459 17..461 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:25:45 Download gff for BS08311.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17214737..17215181 17..461 100   Plus

BS08311.complete Sequence

1183 bp (1183 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636137

> BS08311.complete
GAAGTTATCAGTCGACATGCTGAATATGGAAAGCGCGGGTGTCAGTGCTG
CGATGGCGGGTCTGAGCAAATCGCTCACCACGCCCTTCTCCATCAACGAT
ATCCTAACGCGCAGCAATCCGGAAACACGTCGCATGTCCAGCGTGGACTC
CGAACCGGAACCGGAAAAGCTGAAACCCTCCTCCGATCGCGAGCGATCGA
TCTCCAAGTCGCCGCCACTCTGCTGCCGAGATCTCGGCCTCTACAAGCTG
ACCCAACCCAAGGAGATCCAACCAAGTGCCAGGCAACCCAGCAACTATCT
GCAGTATTATGCGGCGGCGATGGACAACAATAACCACCATCACCAGGCAA
CGGGCACATCGAACTCCAGTGCCGCCGACTACATGCAGCGCAAATTGGCC
TATTTTGGATCCACCCTCGCTGCTCCTTTGGACATGAGACGCTGCACCAG
CAACGATTCCGACTGCGACTCACCACCGCCATTGAGCAGTTCCCCCTCGG
AGTCGCCGCTATCCCACGACGGCAGTGGATTGAGCCGCAAGAAGCGGTCG
CGTGCCGCCTTCAGCCACGCCCAGGTCTTCGAGTTGGAGCGCCGCTTTGC
CCAACAGCGCTACTTGTCCGGTCCGGAACGCAGCGAGATGGCCAAGAGCC
TGCGCCTGACGGAGACCCAGGTGAAGATCTGGTTCCAAAACCGCCGCTAC
AAGACCAAGCGCAAGCAGATCCAGCAGCACGAGGCCGCCCTTTTGGGTGC
CAGCAAGAGGGTTCCCGTCCAAGTCTTGGTGCGAGAGGATGGCAGCACCA
CCTACGCTCACATGGCTGCTCCCGGTGCTGGACACGGCCTCGATCCCGCC
CTGATCAACATCTACCGCCATCAGCTGCAGCTGGCCTACGGCGGACTTCC
GCTGCCACAGATGCAGATGCCATTCCCGTACTTCTACCCGCAACACAAGG
TGCCGCAACCCATACCGCCACCAACCCAGAGTTCCAGCTTTGTGACTGCA
TCCTCGGCGTCCTCATCGCCAGTTCCCATCCCCATCCCGGGTGCAGTGCG
TCCCCAGCGAACGCCGTGTCCCAGTCCCAATGGCCAGATGATGAGCGTCG
AGAGCGGAGCGGAGAGCGTTCACTCGGCGGCGGAGGATGTTGACGAGAAT
GTGGAGATCGACTAGCGAAGCTTTCTAGACCAT

BS08311.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
bap-RA 1149 CG7902-PA 1..1149 17..1165 5745 100 Plus
vnd-RB 1734 CG6172-PB 1309..1367 653..711 205 89.8 Plus
vnd-RA 2172 CG6172-PA 1747..1805 653..711 205 89.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
bap-RA 1449 CG7902-RA 136..1284 17..1165 5745 100 Plus
vnd-RB 3412 CG6172-RB 2147..2205 653..711 205 89.8 Plus
vnd-RA 3033 CG6172-RA 2100..2158 653..711 205 89.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21389580..21390284 461..1165 3525 100 Plus
3R 32079331 3R 21389015..21389459 17..461 2225 100 Plus
X 23542271 X 596886..596944 653..711 205 89.8 Plus
Blast to na_te.dros performed on 2014-11-27 14:27:34 has no hits.

BS08311.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:36 Download gff for BS08311.complete
Subject Subject Range Query Range Percent Splice Strand
bap-RA 1..1149 17..1165 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:37 Download gff for BS08311.complete
Subject Subject Range Query Range Percent Splice Strand
bap-RA 133..1281 17..1165 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:42 Download gff for BS08311.complete
Subject Subject Range Query Range Percent Splice Strand
bap-RA 136..1285 17..1167 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:36 Download gff for BS08311.complete
Subject Subject Range Query Range Percent Splice Strand
bap-RA 133..1281 17..1165 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:04 Download gff for BS08311.complete
Subject Subject Range Query Range Percent Splice Strand
bap-RA 136..1285 17..1167 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:04 Download gff for BS08311.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21389015..21389459 17..461 100 -> Plus
3R 21389581..21390285 462..1167 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:42 Download gff for BS08311.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17214737..17215181 17..461 100 -> Plus
arm_3R 17215303..17216007 462..1167 99   Plus

BS08311.pep Sequence

Translation from 16 to 1164

> BS08311.pep
MLNMESAGVSAAMAGLSKSLTTPFSINDILTRSNPETRRMSSVDSEPEPE
KLKPSSDRERSISKSPPLCCRDLGLYKLTQPKEIQPSARQPSNYLQYYAA
AMDNNNHHHQATGTSNSSAADYMQRKLAYFGSTLAAPLDMRRCTSNDSDC
DSPPPLSSSPSESPLSHDGSGLSRKKRSRAAFSHAQVFELERRFAQQRYL
SGPERSEMAKSLRLTETQVKIWFQNRRYKTKRKQIQQHEAALLGASKRVP
VQVLVREDGSTTYAHMAAPGAGHGLDPALINIYRHQLQLAYGGLPLPQMQ
MPFPYFYPQHKVPQPIPPPTQSSSFVTASSASSSPVPIPIPGAVRPQRTP
CPSPNGQMMSVESGAESVHSAAEDVDENVEID*

BS08311.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
bap-PA 382 CG7902-PA 1..382 1..382 1985 100 Plus
Hmx-PD 718 CG43748-PD 319..623 41..318 244 29.4 Plus
scro-PA 468 CG17594-PA 113..358 21..274 239 30.8 Plus
Hmx-PE 592 CG43748-PE 319..558 41..261 239 31.6 Plus
Hmx-PC 592 CG43748-PC 319..558 41..261 239 31.6 Plus