Clone Sequence Records
BS08314.5prime Sequence
473 bp (472 high quality bases) assembled on 2006-01-10
> BS08314.5prime
GAAGTTATCAGTCGACATGGTGGGCTCCAATTTCGGAATTATTTACCACA
ACAGCGCCGGTGGCGCAAGCAGTCATGGACAATCCTCGGGAGGAGGTGGC
GGTGGAGATCGGGATAGGACCACACCATCTTCGCATCTCAGCGACTTCAT
GTCGCAGCTGGAAGATTATACTCCATTGATTCCGGATGCGGTCACCTCGC
ACTATCTCAACATGGGAGGCTTTCAGTCGGACGACAAGCGCATCGTTCGG
CTGATCAGCCTAGCCGCCCAGAAGTACATGTCCGACATCATCGACGATGC
ACTGCAGCACTCCAAGGCGCGCACCCATATGCAAACCACCAATACACCGG
GAGGATCGAAGGCCAAGGACCGCAAGTTCACCTTGACCATGGAGGATCTG
CAGCCGGCTTTGGCCGACTACGGTATTAATGTTAGGAAAGTGGACTATAG
TCAGTAGCGAAGCTTTCTAGACC
BS08314.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3069-PA | 441 | Taf10b-RA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf10b-RA | 560 | CG3069-RA | 69..509 | 17..457 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2767337..2767777 | 457..17 | 2205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:21:31 has no hits.
BS08314.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:19 Download gff for
BS08314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3069-PA | 1..441 | 17..457 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:50 Download gff for
BS08314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3069-PA | 1..441 | 17..457 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:40:10 Download gff for
BS08314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf10b-RA | 66..513 | 12..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:51 Download gff for
BS08314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf10b-RA | 66..513 | 12..461 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:51 Download gff for
BS08314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2767333..2767780 | 12..461 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:40:10 Download gff for
BS08314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2767333..2767780 | 12..461 | 99 | | Minus |
BS08314.3prime Sequence
473 bp (472 high quality bases) assembled on 2006-01-10
> BS08314.3prime
ATGGTCTAGAAAGCTTCGCCCCTGACTATAGTCCACTTTCCTAACATTAA
TACCGTAGTCGGCCAAAGCCGGCTGCAGATCCTCCATGGTCAAGGTGAAC
TTGCGGTCCTTGGCCTTCGATCCTCCCGGTGTATTGGTGGTTTGCATATG
GGTGCGCGCCTTGGAGTGCTGCAGTGCATCGTCGATGATGTCGGACATGT
ACTTCTGGGCGGCTAGGCTGATCAGCCGAACGATGCGCTTGTCGTCCGAC
TGAAAGCCTCCCATGTTGAGATAGTGCGAGGTGACCGCATCCGGAATCAA
TGGAGTATAATCTTCCAGCTGCGACATGAAGTCGCTGAGATGCGAAGATG
GTGTGGTCCTATCCCGATCTCCACCGCCACCTCCTCCCGAGGATTGTCCA
TGACTGCTTGCGCCACCGGCGCTGTTGTGGTAAATAATTCCGAAATTGGA
GCCCACCATGTCGACTGATAACT
BS08314.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3069-PA | 441 | Taf10b-RA | 1..438 | 459..22 | 2190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf10b-RA | 560 | CG3069-RA | 69..506 | 459..22 | 2190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2767340..2767777 | 22..459 | 2190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:17:05 has no hits.
BS08314.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:18 Download gff for
BS08314.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3069-PA | 1..441 | 19..459 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:49 Download gff for
BS08314.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3069-PA | 1..441 | 19..459 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:22:11 Download gff for
BS08314.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf10b-RA | 66..513 | 15..464 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:29:41 Download gff for
BS08314.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf10b-RA | 66..513 | 15..464 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:29:41 Download gff for
BS08314.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2767333..2767780 | 15..464 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:22:11 Download gff for
BS08314.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2767333..2767780 | 15..464 | 98 | | Plus |
BS08314.complete Sequence
475 bp (475 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636138
> BS08314.complete
GAAGTTATCAGTCGACATGGTGGGCTCCAATTTCGGAATTATTTACCACA
ACAGCGCCGGTGGCGCAAGCAGTCATGGACAATCCTCGGGAGGAGGTGGC
GGTGGAGATCGGGATAGGACCACACCATCTTCGCATCTCAGCGACTTCAT
GTCGCAGCTGGAAGATTATACTCCATTGATTCCGGATGCGGTCACCTCGC
ACTATCTCAACATGGGAGGCTTTCAGTCGGACGACAAGCGCATCGTTCGG
CTGATCAGCCTAGCCGCCCAGAAGTACATGTCCGACATCATCGACGATGC
ACTGCAGCACTCCAAGGCGCGCACCCATATGCAAACCACCAATACACCGG
GAGGATCGAAGGCCAAGGACCGCAAGTTCACCTTGACCATGGAGGATCTG
CAGCCGGCTTTGGCCGACTACGGTATTAATGTTAGGAAAGTGGACTATAG
TCAGTAGCGAAGCTTTCTAGACCAT
BS08314.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf10b-RA | 441 | CG3069-PA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf10b-RA | 560 | CG3069-RA | 69..509 | 17..457 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:47:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2767337..2767777 | 457..17 | 2205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:47:45 has no hits.
BS08314.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:37 Download gff for
BS08314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf10b-RA | 1..441 | 17..457 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:20 Download gff for
BS08314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf10b-RA | 265..712 | 12..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:38 Download gff for
BS08314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf10b-RA | 69..509 | 17..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:37 Download gff for
BS08314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf10b-RA | 265..712 | 12..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:09 Download gff for
BS08314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf10b-RA | 69..509 | 17..459 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:09 Download gff for
BS08314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2767335..2767777 | 17..459 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:38 Download gff for
BS08314.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2767335..2767777 | 17..459 | 99 | | Minus |
BS08314.pep Sequence
Translation from 16 to 456
> BS08314.pep
MVGSNFGIIYHNSAGGASSHGQSSGGGGGGDRDRTTPSSHLSDFMSQLED
YTPLIPDAVTSHYLNMGGFQSDDKRIVRLISLAAQKYMSDIIDDALQHSK
ARTHMQTTNTPGGSKAKDRKFTLTMEDLQPALADYGINVRKVDYSQ*
BS08314.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf10b-PA | 146 | CG3069-PA | 1..146 | 1..146 | 759 | 100 | Plus |
| Taf10-PA | 167 | CG2859-PA | 51..165 | 35..144 | 289 | 53 | Plus |
