Clone BS08319 Report

Search the DGRC for BS08319

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:83
Well:19
Vector:pDNR-Dual
Associated Gene/Transcriptexex-RA
Protein status:BS08319.pep: full length peptide match
Sequenced Size:1612

Clone Sequence Records

BS08319.3prime Sequence

780 bp (740 high quality bases) assembled on 2006-01-10

> BS08319.3prime
ATGGTCTAGAAAGCTTCGCTAACTGGCGGCACTGGGCGTCTGTTGCTGCT
GCTGCTGCTGCTGGTTGGCCTTTGCCCGCTCCTTGGCCTCCTGCTGCGCC
TTCTTGGAGCGCTTCCACTTCATCCGACGATTCTGGAACCAGATCTTCAC
CTGCGTCTCGGACAGCATCAGACCGCTGGCCACCTCGAATCGTTTGGGCC
GACTCAGATACTTGTTCTGCTTGAATTGCTTCTCCAGCTCGAGGAGTTGC
TGCGATGTAAAGGCCGTTCGTGGTCTCCTGGTCTTGCCCAGAATCGCATG
ATGCGGATAGGCGGCCAGTTCGGGAATTCGATGGTGCAGCATTCCGGCGC
GGGCCAGGAATTCGAATTGCAGCTGCGACGGCATGAAATTATGACCCATG
GGTATCGGAATGGGTTTCCCTGAGGGATCCAGAGGTCTGTGGAAGGCGGA
TCCACCTTGGGCCAGCAGCTGGTAGGGATGTCCTCCTGCGTAGAGCGGAA
AATCCTGGGGTCTGATGGGACTGTGGGGTGGTATTGGCTTCTTGAACTCG
TCGTGGAAGTCGGACATGCGCATGGACAGATGCTGGGGATGCAGTGCACC
GTGGGGCTGCTGCTGATCCTCACAACCGGGACTGATGGGCGGACTGGAGC
GGTGCGACGAAGTGGGCGACTCTGATCTCGACATGCCGTCGGGACTGGGT
GAGTCGTACTCCCTGGAGTCCCGGATGCGCTGCAGTGCCTCCTGTTCGCT
GATGCCGCCGGCGGCCGAGGCAGCCGCCTG

BS08319.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8254-PA 1578 exex-RA 817..1578 780..19 3810 100 Minus
CG5832-PA 792 Hmx-RA 536..569 161..128 170 100 Minus
CG11551-PA 1176 ind-RA 1012..1046 162..128 150 97.1 Minus
CG1897-PA 1548 Dr-RA 1384..1412 159..131 145 100 Minus
CG7734-PA 7599 shn-RA 973..1001 63..35 145 100 Minus
CG7734-PB 7599 shn-RB 973..1001 63..35 145 100 Minus
CG7734-PC 7599 shn-RC 973..1001 63..35 145 100 Minus
CG7734-PD 7734 shn-RD 1108..1136 63..35 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
exex-RA 2378 CG8254-RA 997..1758 780..19 3810 100 Minus
Hmx-RE 3384 CG43748-RE 1952..2009 166..109 200 89.7 Minus
Hmx-RD 2691 CG43748-RD 1952..2009 166..109 200 89.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7950549..7950943 413..19 1945 99.5 Minus
3L 28110227 3L 7950149..7950421 678..406 1365 100 Minus
3L 28110227 3L 7949182..7949285 780..677 520 100 Minus
3R 32079331 3R 17567665..17567722 166..109 200 89.7 Minus
Blast to na_te.dros performed on 2015-02-03 09:25:15 has no hits.

BS08319.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:23 Download gff for BS08319.3prime
Subject Subject Range Query Range Percent Splice Strand
exex-PA 817..1578 19..780 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:55 Download gff for BS08319.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8254-PA 817..1578 19..780 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:46:31 Download gff for BS08319.3prime
Subject Subject Range Query Range Percent Splice Strand
exex-RA 997..1767 6..780 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 10:00:31 Download gff for BS08319.3prime
Subject Subject Range Query Range Percent Splice Strand
exex-RA 997..1767 6..780 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 10:00:31 Download gff for BS08319.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7949182..7949285 677..780 100 -> Minus
3L 7950151..7950421 406..676 100 -> Minus
3L 7950557..7950952 6..405 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:46:31 Download gff for BS08319.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7942282..7942385 677..780 100 -> Minus
arm_3L 7943251..7943521 406..676 100 -> Minus
arm_3L 7943657..7944052 6..405 98   Minus

BS08319.5prime Sequence

705 bp (696 high quality bases) assembled on 2006-01-10

> BS08319.5prime
GAAGTTATCAGTCGACATGTCCAGTGCCCAAGTGTCGCAACAGCCGCCTC
CACCGCCGCTGACCGCCAGCAGTAGCACCTCAATGCCGTCGCAATTGCTA
CTTAGCCACATTCAGCACCACAGCAGCAGTCTGCACCATCAGCGCAGTCA
TCAGCGATCATCGCCACCTGCCCAGGACTACGATCAGGGCAGCAATCAAT
CAACACTCTCGCCCAGATCCCAGATAACACCCAGTCCGCCGGCAGCCAGT
CCCACGCATTCGGCGGCCACCACAGGATCACCAGTTAGCACCTATACACC
GGCCTTGAGTCCCGGTGGTGCACAGGATAGCAGCCAAACGGAGAGTGGTC
AGAGTTCACAGATGCCTCTACTAGTGGCTCCCATGCCCGTGGGCACTGGT
CCGCCACATTCACATCCACCGCCGCCGCATCCTCGTCTCTATGTGGAGGG
TTTCCCGCCACCGCATCATGTGCCACATCCACATCCCGCCCTGGGCACCT
ATCCTCTGCCACGACTGCCCCTTATGTTACCGGCAAATCCACCAGGTGTG
CCATCGGGAGCGGCTGCACCACCGCCCGTCTCACCGCAACCCGCTGCCAA
TCACCTGAGCCACAGTGGAGCCACCATGGCCACAACCACACTCCTGCCAC
CCGCCCAAAGTCAGCCCAAGAAATCCTTCTGCATCGATGCTTTGCTGGCC
AAGAG

BS08319.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8254-PA 1578 exex-RA 1..689 17..705 3445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
exex-RA 2378 CG8254-RA 180..869 16..705 3450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7948365..7949054 16..705 3450 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:29:02 has no hits.

BS08319.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:24 Download gff for BS08319.5prime
Subject Subject Range Query Range Percent Splice Strand
exex-PA 1..689 17..705 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:57 Download gff for BS08319.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8254-PA 1..689 17..705 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:24:56 Download gff for BS08319.5prime
Subject Subject Range Query Range Percent Splice Strand
exex-RA 173..869 10..705 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:33:49 Download gff for BS08319.5prime
Subject Subject Range Query Range Percent Splice Strand
exex-RA 173..869 10..705 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:33:49 Download gff for BS08319.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7948358..7949054 10..705 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:24:56 Download gff for BS08319.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7941458..7942154 10..705 99   Plus

BS08319.complete Sequence

1612 bp assembled on 2010-05-10

GenBank Submission: KX801274

> BS08319.complete
GAAGTTATCAGTCGACATGTCCAGTGCCCAAGTGTCGCAACAGCCGCCTC
CACCGCCGCTGACCGCCAGCAGTAGCACCTCAATGCCGTCGCAATTGCTA
CTTAGCCACATTCAGCACCACAGCAGCAGTCTGCACCATCAGCGCAGTCA
TCAGCGATCATCGCCACCTGCCCAGGACTACGATCAGGGCAGCAATCAAT
CAACACTCTCGCCCAGATCCCAGATAACACCCAGTCCGCCGGCAGCCAGT
CCCACGCATTCGGCGGCCACCACAGGATCACCAGTTAGCACCTATACACC
GGCCTTGAGTCCCGGTGGTGCACAGGATAGCAGCCAAACGGAGAGTGGTC
AGAGTTCACAGATGCCTCTACTAGTGGCTCCCATGCCCGTGGGCACTGGT
CCGCCACATTCACATCCACCGCCGCCGCATCCTCGTCTCTATGTGGAGGG
TTTCCCGCCACCGCATCATGTGCCACATCCACATCCCGCCCTGGGCACCT
ATCCTCTGCCACGACTGCCCCTTATGTTACCGGCAAATCCACCAGGTGTG
CCATCGGGAGCGGCTGCACCACCGCCCGTCTCACCGCAACCCGCTGCCAA
TCACCTGAGCCACAGTGGAGCCACCATGGCCACAACCACACTCCTGCCAC
CCGCCCAAAGTCAGCCCAAGAAATCCTTCTGCATCGATGCTTTGCTGGCC
AAGAGCCAACACCAGTCGGGTGAGCCACAGCCCATCATTGTGGATGATCG
TCTGGCTGCCCTGCACTATGCCCGGGATCAGGCGGAACTCAATCATGCCT
TTGTGACCGCCTCCAATGCGGCGGCAGCTGCTCAGGCGGCTGCCTCGGCC
GCCGGCGGCATCAGCGAACAGGAGGCACTGCAGCGCATCCGGGACTCCAG
GGAGTACGACTCACCCAGTCCCGACGGCATGTCGAGATCAGAGTCGCCCA
CTTCGTCGCACCGCTCCAGTCCGCCCATCAGTCCCGGTTGTGAGGATCAG
CAGCAGCCCCACGGTGCACTGCATCCCCAGCATCTGTCCATGCGCATGTC
CGACTTCCACGACGAGTTCAAGAAGCCAATACCACCCCACAGTCCCATCA
GACCCCAGGATTTTCCGCTCTACGCAGGAGGACATCCCTACCAGCTGCTG
GCCCAAGGTGGATCCGCCTTCCACAGACCTCTGGATCCCTCAGGGAAACC
CATTCCGATACCCATGGGTCATAATTTCATGCCGTCGCAGCTGCAATTCG
AATTCCTGGCCCGCGCCGGAATGCTGCACCATCGAATTCCCGAACTGGCC
GCCTATCCGCATCATGCGATTCTGGGCAAGACCAGGAGACCACGAACGGC
CTTTACATCGCAGCAACTCCTCGAGCTGGAGAAGCAATTCAAGCAGAACA
AGTATCTGAGTCGGCCCAAACGATTCGAGGTGGCCAGCGGTCTGATGCTG
TCCGAGACGCAGGTGAAGATCTGGTTCCAGAATCGTCGGATGAAGTGGAA
GCGCTCCAAGAAGGCGCAGCAGGAGGCCAAGGAGCGGGCAAAGGCCAACC
AGCAGCAGCAGCAGCAGCAACAGACGCCCAGTGCCGCCAGTTAGCGAAGC
TTTCTAGACCAT

BS08319.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
exex-RA 1578 CG8254-PA 1..1578 17..1594 7890 100 Plus
Hmx-RE 1779 CG43748-PE 1518..1575 1447..1504 200 89.7 Plus
Hmx-RD 2157 CG43748-PD 1518..1575 1447..1504 200 89.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
exex-RA 2378 CG8254-RA 180..1758 16..1594 7895 100 Plus
Hmx-RE 3384 CG43748-RE 1952..2009 1447..1504 200 89.7 Plus
Hmx-RD 2691 CG43748-RD 1952..2009 1447..1504 200 89.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7948365..7949285 16..936 4605 100 Plus
3L 28110227 3L 7950549..7950943 1200..1594 1945 99.5 Plus
3L 28110227 3L 7950149..7950421 935..1207 1365 100 Plus
3R 32079331 3R 17567665..17567722 1447..1504 200 89.7 Plus
Blast to na_te.dros performed on 2014-11-28 02:44:30 has no hits.

BS08319.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:11 Download gff for BS08319.complete
Subject Subject Range Query Range Percent Splice Strand
exex-RA 176..1754 17..1596 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:26:21 Download gff for BS08319.complete
Subject Subject Range Query Range Percent Splice Strand
exex-RA 181..1759 17..1596 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:04 Download gff for BS08319.complete
Subject Subject Range Query Range Percent Splice Strand
exex-RA 181..1759 17..1596 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:04 Download gff for BS08319.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7948366..7949285 17..936 100 -> Plus
3L 7950151..7950421 937..1207 100 -> Plus
3L 7950557..7950944 1208..1596 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:26:21 Download gff for BS08319.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7941466..7942385 17..936 100 -> Plus
arm_3L 7943251..7943521 937..1207 100 -> Plus
arm_3L 7943657..7944044 1208..1596 99   Plus

BS08319.pep Sequence

Translation from 16 to 1593

> BS08319.pep
MSSAQVSQQPPPPPLTASSSTSMPSQLLLSHIQHHSSSLHHQRSHQRSSP
PAQDYDQGSNQSTLSPRSQITPSPPAASPTHSAATTGSPVSTYTPALSPG
GAQDSSQTESGQSSQMPLLVAPMPVGTGPPHSHPPPPHPRLYVEGFPPPH
HVPHPHPALGTYPLPRLPLMLPANPPGVPSGAAAPPPVSPQPAANHLSHS
GATMATTTLLPPAQSQPKKSFCIDALLAKSQHQSGEPQPIIVDDRLAALH
YARDQAELNHAFVTASNAAAAAQAAASAAGGISEQEALQRIRDSREYDSP
SPDGMSRSESPTSSHRSSPPISPGCEDQQQPHGALHPQHLSMRMSDFHDE
FKKPIPPHSPIRPQDFPLYAGGHPYQLLAQGGSAFHRPLDPSGKPIPIPM
GHNFMPSQLQFEFLARAGMLHHRIPELAAYPHHAILGKTRRPRTAFTSQQ
LLELEKQFKQNKYLSRPKRFEVASGLMLSETQVKIWFQNRRMKWKRSKKA
QQEAKERAKANQQQQQQQQTPSAAS*

BS08319.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
exex-PA 525 CG8254-PA 1..525 1..525 2786 100 Plus
zen-PA 353 CG1046-PA 89..168 438..517 222 56.2 Plus
Dfd-PA 586 CG2189-PA 367..467 440..519 221 46.5 Plus
pb-PD 772 CG31481-PD 186..266 437..514 214 55.6 Plus
pb-PC 777 CG31481-PC 191..271 437..514 214 55.6 Plus