Clone Sequence Records
BS08319.3prime Sequence
780 bp (740 high quality bases) assembled on 2006-01-10
> BS08319.3prime
ATGGTCTAGAAAGCTTCGCTAACTGGCGGCACTGGGCGTCTGTTGCTGCT
GCTGCTGCTGCTGGTTGGCCTTTGCCCGCTCCTTGGCCTCCTGCTGCGCC
TTCTTGGAGCGCTTCCACTTCATCCGACGATTCTGGAACCAGATCTTCAC
CTGCGTCTCGGACAGCATCAGACCGCTGGCCACCTCGAATCGTTTGGGCC
GACTCAGATACTTGTTCTGCTTGAATTGCTTCTCCAGCTCGAGGAGTTGC
TGCGATGTAAAGGCCGTTCGTGGTCTCCTGGTCTTGCCCAGAATCGCATG
ATGCGGATAGGCGGCCAGTTCGGGAATTCGATGGTGCAGCATTCCGGCGC
GGGCCAGGAATTCGAATTGCAGCTGCGACGGCATGAAATTATGACCCATG
GGTATCGGAATGGGTTTCCCTGAGGGATCCAGAGGTCTGTGGAAGGCGGA
TCCACCTTGGGCCAGCAGCTGGTAGGGATGTCCTCCTGCGTAGAGCGGAA
AATCCTGGGGTCTGATGGGACTGTGGGGTGGTATTGGCTTCTTGAACTCG
TCGTGGAAGTCGGACATGCGCATGGACAGATGCTGGGGATGCAGTGCACC
GTGGGGCTGCTGCTGATCCTCACAACCGGGACTGATGGGCGGACTGGAGC
GGTGCGACGAAGTGGGCGACTCTGATCTCGACATGCCGTCGGGACTGGGT
GAGTCGTACTCCCTGGAGTCCCGGATGCGCTGCAGTGCCTCCTGTTCGCT
GATGCCGCCGGCGGCCGAGGCAGCCGCCTG
BS08319.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8254-PA | 1578 | exex-RA | 817..1578 | 780..19 | 3810 | 100 | Minus |
CG5832-PA | 792 | Hmx-RA | 536..569 | 161..128 | 170 | 100 | Minus |
CG11551-PA | 1176 | ind-RA | 1012..1046 | 162..128 | 150 | 97.1 | Minus |
CG1897-PA | 1548 | Dr-RA | 1384..1412 | 159..131 | 145 | 100 | Minus |
CG7734-PA | 7599 | shn-RA | 973..1001 | 63..35 | 145 | 100 | Minus |
CG7734-PB | 7599 | shn-RB | 973..1001 | 63..35 | 145 | 100 | Minus |
CG7734-PC | 7599 | shn-RC | 973..1001 | 63..35 | 145 | 100 | Minus |
CG7734-PD | 7734 | shn-RD | 1108..1136 | 63..35 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:25:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exex-RA | 2378 | CG8254-RA | 997..1758 | 780..19 | 3810 | 100 | Minus |
Hmx-RE | 3384 | CG43748-RE | 1952..2009 | 166..109 | 200 | 89.7 | Minus |
Hmx-RD | 2691 | CG43748-RD | 1952..2009 | 166..109 | 200 | 89.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7950549..7950943 | 413..19 | 1945 | 99.5 | Minus |
3L | 28110227 | 3L | 7950149..7950421 | 678..406 | 1365 | 100 | Minus |
3L | 28110227 | 3L | 7949182..7949285 | 780..677 | 520 | 100 | Minus |
3R | 32079331 | 3R | 17567665..17567722 | 166..109 | 200 | 89.7 | Minus |
Blast to na_te.dros performed on 2015-02-03 09:25:15 has no hits.
BS08319.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:23 Download gff for
BS08319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exex-PA | 817..1578 | 19..780 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:55 Download gff for
BS08319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8254-PA | 817..1578 | 19..780 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:46:31 Download gff for
BS08319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exex-RA | 997..1767 | 6..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 10:00:31 Download gff for
BS08319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exex-RA | 997..1767 | 6..780 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 10:00:31 Download gff for
BS08319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7949182..7949285 | 677..780 | 100 | -> | Minus |
3L | 7950151..7950421 | 406..676 | 100 | -> | Minus |
3L | 7950557..7950952 | 6..405 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:46:31 Download gff for
BS08319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7942282..7942385 | 677..780 | 100 | -> | Minus |
arm_3L | 7943251..7943521 | 406..676 | 100 | -> | Minus |
arm_3L | 7943657..7944052 | 6..405 | 98 | | Minus |
BS08319.5prime Sequence
705 bp (696 high quality bases) assembled on 2006-01-10
> BS08319.5prime
GAAGTTATCAGTCGACATGTCCAGTGCCCAAGTGTCGCAACAGCCGCCTC
CACCGCCGCTGACCGCCAGCAGTAGCACCTCAATGCCGTCGCAATTGCTA
CTTAGCCACATTCAGCACCACAGCAGCAGTCTGCACCATCAGCGCAGTCA
TCAGCGATCATCGCCACCTGCCCAGGACTACGATCAGGGCAGCAATCAAT
CAACACTCTCGCCCAGATCCCAGATAACACCCAGTCCGCCGGCAGCCAGT
CCCACGCATTCGGCGGCCACCACAGGATCACCAGTTAGCACCTATACACC
GGCCTTGAGTCCCGGTGGTGCACAGGATAGCAGCCAAACGGAGAGTGGTC
AGAGTTCACAGATGCCTCTACTAGTGGCTCCCATGCCCGTGGGCACTGGT
CCGCCACATTCACATCCACCGCCGCCGCATCCTCGTCTCTATGTGGAGGG
TTTCCCGCCACCGCATCATGTGCCACATCCACATCCCGCCCTGGGCACCT
ATCCTCTGCCACGACTGCCCCTTATGTTACCGGCAAATCCACCAGGTGTG
CCATCGGGAGCGGCTGCACCACCGCCCGTCTCACCGCAACCCGCTGCCAA
TCACCTGAGCCACAGTGGAGCCACCATGGCCACAACCACACTCCTGCCAC
CCGCCCAAAGTCAGCCCAAGAAATCCTTCTGCATCGATGCTTTGCTGGCC
AAGAG
BS08319.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8254-PA | 1578 | exex-RA | 1..689 | 17..705 | 3445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exex-RA | 2378 | CG8254-RA | 180..869 | 16..705 | 3450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7948365..7949054 | 16..705 | 3450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:29:02 has no hits.
BS08319.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:24 Download gff for
BS08319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exex-PA | 1..689 | 17..705 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:57 Download gff for
BS08319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8254-PA | 1..689 | 17..705 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:24:56 Download gff for
BS08319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exex-RA | 173..869 | 10..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:33:49 Download gff for
BS08319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exex-RA | 173..869 | 10..705 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:33:49 Download gff for
BS08319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7948358..7949054 | 10..705 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:24:56 Download gff for
BS08319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7941458..7942154 | 10..705 | 99 | | Plus |
BS08319.complete Sequence
1612 bp assembled on 2010-05-10
GenBank Submission: KX801274
> BS08319.complete
GAAGTTATCAGTCGACATGTCCAGTGCCCAAGTGTCGCAACAGCCGCCTC
CACCGCCGCTGACCGCCAGCAGTAGCACCTCAATGCCGTCGCAATTGCTA
CTTAGCCACATTCAGCACCACAGCAGCAGTCTGCACCATCAGCGCAGTCA
TCAGCGATCATCGCCACCTGCCCAGGACTACGATCAGGGCAGCAATCAAT
CAACACTCTCGCCCAGATCCCAGATAACACCCAGTCCGCCGGCAGCCAGT
CCCACGCATTCGGCGGCCACCACAGGATCACCAGTTAGCACCTATACACC
GGCCTTGAGTCCCGGTGGTGCACAGGATAGCAGCCAAACGGAGAGTGGTC
AGAGTTCACAGATGCCTCTACTAGTGGCTCCCATGCCCGTGGGCACTGGT
CCGCCACATTCACATCCACCGCCGCCGCATCCTCGTCTCTATGTGGAGGG
TTTCCCGCCACCGCATCATGTGCCACATCCACATCCCGCCCTGGGCACCT
ATCCTCTGCCACGACTGCCCCTTATGTTACCGGCAAATCCACCAGGTGTG
CCATCGGGAGCGGCTGCACCACCGCCCGTCTCACCGCAACCCGCTGCCAA
TCACCTGAGCCACAGTGGAGCCACCATGGCCACAACCACACTCCTGCCAC
CCGCCCAAAGTCAGCCCAAGAAATCCTTCTGCATCGATGCTTTGCTGGCC
AAGAGCCAACACCAGTCGGGTGAGCCACAGCCCATCATTGTGGATGATCG
TCTGGCTGCCCTGCACTATGCCCGGGATCAGGCGGAACTCAATCATGCCT
TTGTGACCGCCTCCAATGCGGCGGCAGCTGCTCAGGCGGCTGCCTCGGCC
GCCGGCGGCATCAGCGAACAGGAGGCACTGCAGCGCATCCGGGACTCCAG
GGAGTACGACTCACCCAGTCCCGACGGCATGTCGAGATCAGAGTCGCCCA
CTTCGTCGCACCGCTCCAGTCCGCCCATCAGTCCCGGTTGTGAGGATCAG
CAGCAGCCCCACGGTGCACTGCATCCCCAGCATCTGTCCATGCGCATGTC
CGACTTCCACGACGAGTTCAAGAAGCCAATACCACCCCACAGTCCCATCA
GACCCCAGGATTTTCCGCTCTACGCAGGAGGACATCCCTACCAGCTGCTG
GCCCAAGGTGGATCCGCCTTCCACAGACCTCTGGATCCCTCAGGGAAACC
CATTCCGATACCCATGGGTCATAATTTCATGCCGTCGCAGCTGCAATTCG
AATTCCTGGCCCGCGCCGGAATGCTGCACCATCGAATTCCCGAACTGGCC
GCCTATCCGCATCATGCGATTCTGGGCAAGACCAGGAGACCACGAACGGC
CTTTACATCGCAGCAACTCCTCGAGCTGGAGAAGCAATTCAAGCAGAACA
AGTATCTGAGTCGGCCCAAACGATTCGAGGTGGCCAGCGGTCTGATGCTG
TCCGAGACGCAGGTGAAGATCTGGTTCCAGAATCGTCGGATGAAGTGGAA
GCGCTCCAAGAAGGCGCAGCAGGAGGCCAAGGAGCGGGCAAAGGCCAACC
AGCAGCAGCAGCAGCAGCAACAGACGCCCAGTGCCGCCAGTTAGCGAAGC
TTTCTAGACCAT
BS08319.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:44:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exex-RA | 1578 | CG8254-PA | 1..1578 | 17..1594 | 7890 | 100 | Plus |
Hmx-RE | 1779 | CG43748-PE | 1518..1575 | 1447..1504 | 200 | 89.7 | Plus |
Hmx-RD | 2157 | CG43748-PD | 1518..1575 | 1447..1504 | 200 | 89.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:44:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exex-RA | 2378 | CG8254-RA | 180..1758 | 16..1594 | 7895 | 100 | Plus |
Hmx-RE | 3384 | CG43748-RE | 1952..2009 | 1447..1504 | 200 | 89.7 | Plus |
Hmx-RD | 2691 | CG43748-RD | 1952..2009 | 1447..1504 | 200 | 89.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:44:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7948365..7949285 | 16..936 | 4605 | 100 | Plus |
3L | 28110227 | 3L | 7950549..7950943 | 1200..1594 | 1945 | 99.5 | Plus |
3L | 28110227 | 3L | 7950149..7950421 | 935..1207 | 1365 | 100 | Plus |
3R | 32079331 | 3R | 17567665..17567722 | 1447..1504 | 200 | 89.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:44:30 has no hits.
BS08319.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:11 Download gff for
BS08319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exex-RA | 176..1754 | 17..1596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:26:21 Download gff for
BS08319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exex-RA | 181..1759 | 17..1596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:04 Download gff for
BS08319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exex-RA | 181..1759 | 17..1596 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:04 Download gff for
BS08319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7948366..7949285 | 17..936 | 100 | -> | Plus |
3L | 7950151..7950421 | 937..1207 | 100 | -> | Plus |
3L | 7950557..7950944 | 1208..1596 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:26:21 Download gff for
BS08319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7941466..7942385 | 17..936 | 100 | -> | Plus |
arm_3L | 7943251..7943521 | 937..1207 | 100 | -> | Plus |
arm_3L | 7943657..7944044 | 1208..1596 | 99 | | Plus |
BS08319.pep Sequence
Translation from 16 to 1593
> BS08319.pep
MSSAQVSQQPPPPPLTASSSTSMPSQLLLSHIQHHSSSLHHQRSHQRSSP
PAQDYDQGSNQSTLSPRSQITPSPPAASPTHSAATTGSPVSTYTPALSPG
GAQDSSQTESGQSSQMPLLVAPMPVGTGPPHSHPPPPHPRLYVEGFPPPH
HVPHPHPALGTYPLPRLPLMLPANPPGVPSGAAAPPPVSPQPAANHLSHS
GATMATTTLLPPAQSQPKKSFCIDALLAKSQHQSGEPQPIIVDDRLAALH
YARDQAELNHAFVTASNAAAAAQAAASAAGGISEQEALQRIRDSREYDSP
SPDGMSRSESPTSSHRSSPPISPGCEDQQQPHGALHPQHLSMRMSDFHDE
FKKPIPPHSPIRPQDFPLYAGGHPYQLLAQGGSAFHRPLDPSGKPIPIPM
GHNFMPSQLQFEFLARAGMLHHRIPELAAYPHHAILGKTRRPRTAFTSQQ
LLELEKQFKQNKYLSRPKRFEVASGLMLSETQVKIWFQNRRMKWKRSKKA
QQEAKERAKANQQQQQQQQTPSAAS*
BS08319.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:12:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exex-PA | 525 | CG8254-PA | 1..525 | 1..525 | 2786 | 100 | Plus |
zen-PA | 353 | CG1046-PA | 89..168 | 438..517 | 222 | 56.2 | Plus |
Dfd-PA | 586 | CG2189-PA | 367..467 | 440..519 | 221 | 46.5 | Plus |
pb-PD | 772 | CG31481-PD | 186..266 | 437..514 | 214 | 55.6 | Plus |
pb-PC | 777 | CG31481-PC | 191..271 | 437..514 | 214 | 55.6 | Plus |