Clone Sequence Records
BS08321.3prime Sequence
974 bp (888 high quality bases) assembled on 2006-01-10
> BS08321.3prime
ATGGTCTAGAAAGCTTCTACTGATCTAAGTGTCCACCTTGGACCGCCGCC
GCCGCAGCCGCTGCCGCCGCCGCCTTCTGGGCCTGCGCCTGCTTCTCCTG
TTCGTTCAGCTCCTTGATCGCCTGGATCTCCTTCTTCAGCTTCATTCGCC
GGTTCTGGAACCAGATCTTGATCTGCCGCTCCGTCAGGCATAGCGCGTGC
GCCATCTCGATTCTCCGTCTGCGGGTCAGATAATGATTCGTGTGGAACTC
CTTCTCCAGCTCGAGCGTCTGGTAGCGGGTGTATGTCTGTCGGCCGCGTC
TTCGCAGACCATTTGTACCTAGCCAGTCTGGTAGAAGTGAGCCCGCAAGA
GATTCTGAGTATCTCTTACCCATGTCTGTTGATATGCCGCCGTATTGTGT
TAAATCAGATCTTATCTTACCTGCGATAGCCATCCAGGGGTAGAATGTGT
GATTGCTGGCCTGGTGTAAACTGCTGGCGGCCGCCGTTTGGGCAGCGGCG
CCCGAGATGGTGCAATTGGCATTCCAGGCAGTGCCCGCTCCGGCCACGCC
CACGCCGCTCTGTACGCCTCCGGCGTTGCCGTTGCCGCCGCTGACACTCA
CATTACCGCCGGCACTGCCGCCGCGATGGCTAACGGGACTGCCGCCCGAC
GTGTCCAAATAGCCGCCCACTCGGGAATCTGGGGTGCAGGCGGAGGGTCT
AACGGGCATACCGCCCGCCGGATTGTTCTGTCCGTTTGCATTGGCCGCAT
TACCGCCATTGGCATTGCCGGCTCCACCTGTTCCGCCCGCTCCGCCGCCA
CCACCGCCTCCGCCGCCACCCCCGCCGCCATTCGAGCCGCCCGTGTTCCA
AATGTCTTTGTAGCCATTCACCGCATCCGCCTTGATGTTCAAGCAGTCCT
GTTTGTAGGCTCGGGCTCCATCGCCGTATATCTTGTTGCAGGCGGCCGTG
ATGCTGGCATCGTAGGGCGAGTCC
BS08321.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10388-PE | 1143 | Ubx-RE | 186..1143 | 974..17 | 4740 | 99.7 | Minus |
CG10388-PD | 1092 | Ubx-RD | 186..745 | 974..415 | 2750 | 99.6 | Minus |
CG10388-PB | 1041 | Ubx-RB | 186..742 | 974..418 | 2735 | 99.6 | Minus |
CG10388-PA | 1170 | Ubx-RA | 186..741 | 974..419 | 2730 | 99.6 | Minus |
CG10388-PC | 1119 | Ubx-RC | 186..741 | 974..419 | 2730 | 99.6 | Minus |
CG10388-PF | 1068 | Ubx-RF | 186..741 | 974..419 | 2730 | 99.6 | Minus |
CG10388-PA | 1170 | Ubx-RA | 767..1170 | 420..17 | 2020 | 100 | Minus |
CG10388-PD | 1092 | Ubx-RD | 739..1092 | 370..17 | 1770 | 100 | Minus |
CG10388-PC | 1119 | Ubx-RC | 767..1119 | 369..17 | 1765 | 100 | Minus |
CG10388-PB | 1041 | Ubx-RB | 738..1041 | 320..17 | 1520 | 100 | Minus |
CG10388-PF | 1068 | Ubx-RF | 767..1068 | 318..17 | 1510 | 100 | Minus |
CG1030-PA | 1254 | Scr-RA | 1090..1146 | 184..128 | 210 | 94.7 | Minus |
CG1030-PB | 1254 | Scr-RB | 1090..1146 | 184..128 | 210 | 94.7 | Minus |
CG1030-PC | 1254 | Scr-RC | 1090..1146 | 184..128 | 210 | 94.7 | Minus |
CG1030-PA | 1254 | Scr-RA | 989..1032 | 285..242 | 195 | 97.7 | Minus |
CG1030-PB | 1254 | Scr-RB | 989..1032 | 285..242 | 195 | 97.7 | Minus |
CG1030-PC | 1254 | Scr-RC | 989..1032 | 285..242 | 195 | 97.7 | Minus |
CG10325-PA | 993 | abd-A-RA | 526..588 | 190..128 | 190 | 92 | Minus |
CG10325-PB | 1773 | abd-A-RB | 1306..1368 | 190..128 | 190 | 92 | Minus |
CG2189-PA | 1761 | Dfd-RA | 1217..1271 | 183..129 | 175 | 92.7 | Minus |
CG2047-PA | 1233 | ftz-RA | 775..822 | 289..242 | 140 | 91.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubx-RE | 3117 | CG10388-RE | 1149..2107 | 974..16 | 4765 | 99.8 | Minus |
Ubx-RA | 4282 | CG10388-RA | 1149..2134 | 974..16 | 4465 | 97.1 | Minus |
Ubx-RD | 2784 | CG10388-RD | 1149..1708 | 974..415 | 2770 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16732723..16733278 | 419..974 | 2750 | 99.6 | Plus |
3R | 32079331 | 3R | 16658771..16659075 | 16..320 | 1525 | 100 | Plus |
3R | 32079331 | 3R | 6825490..6825647 | 128..285 | 490 | 87.3 | Plus |
3R | 32079331 | 3R | 16810131..16810338 | 97..304 | 395 | 79.3 | Plus |
3R | 32079331 | 3R | 6898359..6898531 | 127..299 | 385 | 81.5 | Plus |
3R | 32079331 | 3R | 16725250..16725309 | 364..423 | 300 | 100 | Plus |
3R | 32079331 | 3R | 16710559..16710613 | 316..370 | 275 | 100 | Plus |
3R | 32079331 | 3R | 6801029..6801183 | 283..129 | 250 | 77.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:43:46 has no hits.
BS08321.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:25 Download gff for
BS08321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubx-PE | 186..1143 | 17..974 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:58 Download gff for
BS08321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10388-PE | 186..1143 | 17..974 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:01:23 Download gff for
BS08321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubx-RE | 1349..2312 | 11..974 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:47 Download gff for
BS08321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubx-RE | 1149..2112 | 11..974 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:47 Download gff for
BS08321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16658766..16659073 | 11..318 | 99 | <- | Plus |
3R | 16710562..16710612 | 319..369 | 100 | <- | Plus |
3R | 16725256..16725306 | 370..420 | 100 | <- | Plus |
3R | 16732725..16733278 | 421..974 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:01:23 Download gff for
BS08321.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12484488..12484795 | 11..318 | 99 | <- | Plus |
arm_3R | 12536284..12536334 | 319..369 | 100 | <- | Plus |
arm_3R | 12550978..12551028 | 370..420 | 100 | <- | Plus |
arm_3R | 12558447..12559000 | 421..974 | 99 | | Plus |
BS08321.5prime Sequence
874 bp (757 high quality bases) assembled on 2006-01-10
> BS08321.5prime
GAAGTTATCAGTCGACATGAACTCGTACTTTGAACAGGCCTCCGGCTTTT
ATGGCCATCCGCACCAGGCCACCGGAATGGCAATGGGCAGCGGTGGCCAC
CACGACCAGACGGCCAGTGCAGCGGCGGCCGCGTACAGAGGATTCCCTCT
CTCGCTGGGCATGAGTCCCTATGCCAACCACCATCTGCAGCGCACCACCC
AGGACTCGCCCTACGATGCCAGCATCACGGCCGCCTGCAACAAGATATAC
GGCGATGGAGCCGGAGCCTACAAACAGGACTGCCTGAACATCAAGGCGGA
TGCGGTGAATGGCTACAAAGACATTTGGAACACGGGCGGCTCGAATGGCG
GCGGGGGTGGCGGCGGAGGCGGTGGTGGCGGCGGAGCGGGCGGAACAGGT
GGAGCCGGCAATGCCAATGGCGGTAATGCGGCCAATGCAAACGGACAGAA
CAATCCGGCGGGCGGTATGCCCGTTAGACCCTCCGCCTGCACCCCAGATT
CCCGAGTGGGCGGCTATTTGGACACGTCGGGCGGCAGTCCCGTTAGCCAT
CGCGGCGGCAGTGCCGGCGGTAATGTGAGTGTCAGCGGCGGCAACGGCAA
CGCCGGAGGCGTACAGAGCGGCGTGGGCGTGGCCGGAGCGGGCACTGCCT
GGAATGCCAATTGCACCATCTCGGGCGCCGCTGCCCAAACGGCGGCCGCC
AGCAGTTTACACCAGGCCAGCAATCACACATTCTACCCCTGGATGGCTAT
CGCAGGTAAGATAAGATCTGATTTAACACAATACGGCGGCATATCAACAG
ACATGGGTAAGAGATACTCAGAATCTCTTGCGGGCTCACTTCTACCAGAC
TGGCTAGGTACAAATGGTCTGCGA
BS08321.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10388-PE | 1143 | Ubx-RE | 1..858 | 17..874 | 4290 | 100 | Plus |
CG10388-PD | 1092 | Ubx-RD | 1..745 | 17..761 | 3725 | 100 | Plus |
CG10388-PB | 1041 | Ubx-RB | 1..742 | 17..758 | 3710 | 100 | Plus |
CG10388-PA | 1170 | Ubx-RA | 1..741 | 17..757 | 3705 | 100 | Plus |
CG10388-PC | 1119 | Ubx-RC | 1..741 | 17..757 | 3705 | 100 | Plus |
CG10388-PF | 1068 | Ubx-RF | 1..741 | 17..757 | 3705 | 100 | Plus |
CG10388-PA | 1170 | Ubx-RA | 767..885 | 756..874 | 595 | 100 | Plus |
CG10388-PD | 1092 | Ubx-RD | 739..807 | 806..874 | 345 | 100 | Plus |
CG10388-PC | 1119 | Ubx-RC | 767..834 | 807..874 | 340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubx-RE | 3117 | CG10388-RE | 964..1821 | 17..874 | 4290 | 100 | Plus |
Ubx-RA | 4282 | CG10388-RA | 964..1848 | 17..874 | 3990 | 96.9 | Plus |
Ubx-RD | 2784 | CG10388-RD | 964..1708 | 17..761 | 3725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16732723..16733463 | 757..17 | 3705 | 100 | Minus |
3R | 32079331 | 3R | 16725250..16725309 | 812..753 | 300 | 100 | Minus |
3R | 32079331 | 3R | 16710559..16710613 | 860..806 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:30:46 has no hits.
BS08321.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:26 Download gff for
BS08321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubx-PE | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:59 Download gff for
BS08321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10388-PE | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:40:44 Download gff for
BS08321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubx-RE | 1157..2020 | 9..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:00 Download gff for
BS08321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubx-RE | 957..1820 | 9..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:00 Download gff for
BS08321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16659058..16659073 | 858..873 | 100 | <- | Minus |
3R | 16710562..16710612 | 807..857 | 100 | <- | Minus |
3R | 16725256..16725306 | 756..806 | 100 | <- | Minus |
3R | 16732725..16733470 | 9..755 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:40:44 Download gff for
BS08321.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12484780..12484795 | 858..873 | 100 | <- | Minus |
arm_3R | 12536284..12536334 | 807..857 | 100 | <- | Minus |
arm_3R | 12550978..12551028 | 756..806 | 100 | <- | Minus |
arm_3R | 12558447..12559192 | 9..755 | 99 | | Minus |
BS08321.complete Sequence
1175 bp (1175 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636139
> BS08321.complete
GAAGTTATCAGTCGACATGAACTCGTACTTTGAACAGGCCTCCGGCTTTT
ATGGCCATCCGCACCAGGCCACCGGAATGGCAATGGGCAGCGGTGGCCAC
CACGACCAGACGGCCAGTGCAGCGGCGGCCGCGTACAGAGGATTCCCTCT
CTCGCTGGGCATGAGTCCCTATGCCAACCACCATCTGCAGCGCACCACCC
AGGACTCGCCCTACGATGCCAGCATCACGGCCGCCTGCAACAAGATATAC
GGCGATGGAGCCGGAGCCTACAAACAGGACTGCCTGAACATCAAGGCGGA
TGCGGTGAATGGCTACAAAGACATTTGGAACACGGGCGGCTCGAATGGCG
GCGGGGGTGGCGGCGGAGGCGGTGGTGGCGGCGGAGCGGGCGGAACAGGT
GGAGCCGGCAATGCCAATGGCGGTAATGCGGCCAATGCAAACGGACAGAA
CAATCCGGCGGGCGGTATGCCCGTTAGACCCTCCGCCTGCACCCCAGATT
CCCGAGTGGGCGGCTATTTGGACACGTCGGGCGGCAGTCCCGTTAGCCAT
CGCGGCGGCAGTGCCGGCGGTAATGTGAGTGTCAGCGGCGGCAACGGCAA
CGCCGGAGGCGTACAGAGCGGCGTGGGCGTGGCCGGAGCGGGCACTGCCT
GGAATGCCAATTGCACCATCTCGGGCGCCGCTGCCCAAACGGCGGCCGCC
AGCAGTTTACACCAGGCCAGCAATCACACATTCTACCCCTGGATGGCTAT
CGCAGGTAAGATAAGATCTGATTTAACACAATACGGCGGCATATCAACAG
ACATGGGTAAGAGATACTCAGAATCTCTTGCGGGCTCACTTCTACCAGAC
TGGCTAGGTACAAATGGTCTGCGAAGACGCGGCCGACAGACATACACCCG
CTACCAGACGCTCGAGCTGGAGAAGGAGTTCCACACGAATCATTATCTGA
CCCGCAGACGGAGAATCGAGATGGCGCACGCGCTATGCCTGACGGAGCGG
CAGATCAAGATCTGGTTCCAGAACCGGCGAATGAAGCTGAAGAAGGAGAT
CCAGGCGATCAAGGAGCTGAACGAACAGGAGAAGCAGGCGCAGGCCCAGA
AGGCGGCGGCGGCAGCGGCTGCGGCGGCGGCGGTCCAAGGTGGACACTTA
GATCAGTAGAAGCTTTCTAGACCAT
BS08321.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:32:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubx-RE | 1143 | CG10388-PE | 1..1143 | 17..1159 | 5715 | 100 | Plus |
Ubx-RD | 1092 | CG10388-PD | 1..745 | 17..761 | 3725 | 100 | Plus |
Ubx-RB | 1041 | CG10388-PB | 1..742 | 17..758 | 3710 | 100 | Plus |
Ubx-RD | 1092 | CG10388-PD | 739..1092 | 806..1159 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubx-RE | 3117 | CG10388-RE | 964..2107 | 17..1160 | 5720 | 100 | Plus |
Ubx-RD | 2784 | CG10388-RD | 964..1708 | 17..761 | 3725 | 100 | Plus |
Ubx-RB | 3628 | CG10388-RB | 964..1705 | 17..758 | 3710 | 100 | Plus |
Ubx-RD | 2784 | CG10388-RD | 1702..2056 | 806..1160 | 1775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16732723..16733463 | 757..17 | 3705 | 100 | Minus |
3R | 32079331 | 3R | 16658771..16659075 | 1160..856 | 1525 | 100 | Minus |
3R | 32079331 | 3R | 6825490..6825647 | 1048..891 | 490 | 87.3 | Minus |
3R | 32079331 | 3R | 16810131..16810338 | 1079..872 | 395 | 79.3 | Minus |
3R | 32079331 | 3R | 6898359..6898531 | 1049..877 | 385 | 81.5 | Minus |
3R | 32079331 | 3R | 16725250..16725309 | 812..753 | 300 | 100 | Minus |
3R | 32079331 | 3R | 16710559..16710613 | 860..806 | 275 | 100 | Minus |
3R | 32079331 | 3R | 6801029..6801183 | 893..1047 | 250 | 77.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:32:56 has no hits.
BS08321.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:38 Download gff for
BS08321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubx-RE | 1..1143 | 17..1159 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:14 Download gff for
BS08321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubx-RE | 1164..2306 | 17..1159 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:17 Download gff for
BS08321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubx-RE | 1164..2306 | 17..1159 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:38 Download gff for
BS08321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubx-RE | 1157..2312 | 9..1165 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:13:29 Download gff for
BS08321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubx-RE | 964..2106 | 17..1159 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:13:29 Download gff for
BS08321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16658772..16659073 | 858..1159 | 100 | <- | Minus |
3R | 16710562..16710612 | 807..857 | 100 | <- | Minus |
3R | 16725256..16725306 | 756..806 | 100 | <- | Minus |
3R | 16732725..16733463 | 17..755 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:17 Download gff for
BS08321.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12484494..12484795 | 858..1159 | 100 | <- | Minus |
arm_3R | 12536284..12536334 | 807..857 | 100 | <- | Minus |
arm_3R | 12550978..12551028 | 756..806 | 100 | <- | Minus |
arm_3R | 12558447..12559185 | 17..755 | 100 | | Minus |
BS08321.pep Sequence
Translation from 16 to 1158
> BS08321.pep
MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMS
PYANHHLQRTTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGY
KDIWNTGGSNGGGGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGG
MPVRPSACTPDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQ
SGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIAGKIR
SDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLE
LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKE
LNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ*
BS08321.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubx-PE | 380 | CG10388-PE | 1..380 | 1..380 | 2023 | 100 | Plus |
Ubx-PA | 389 | CG10388-PA | 1..389 | 1..380 | 2003 | 97.7 | Plus |
Ubx-PC | 372 | CG10388-PC | 1..372 | 1..380 | 1924 | 96.1 | Plus |
Ubx-PD | 363 | CG10388-PD | 1..363 | 1..380 | 1908 | 95.5 | Plus |
Ubx-PF | 355 | CG10388-PF | 1..355 | 1..380 | 1817 | 91.6 | Plus |