Clone BS08321 Report

Search the DGRC for BS08321

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:83
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptUbx-RE
Protein status:BS08321.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08321.3prime Sequence

974 bp (888 high quality bases) assembled on 2006-01-10

> BS08321.3prime
ATGGTCTAGAAAGCTTCTACTGATCTAAGTGTCCACCTTGGACCGCCGCC
GCCGCAGCCGCTGCCGCCGCCGCCTTCTGGGCCTGCGCCTGCTTCTCCTG
TTCGTTCAGCTCCTTGATCGCCTGGATCTCCTTCTTCAGCTTCATTCGCC
GGTTCTGGAACCAGATCTTGATCTGCCGCTCCGTCAGGCATAGCGCGTGC
GCCATCTCGATTCTCCGTCTGCGGGTCAGATAATGATTCGTGTGGAACTC
CTTCTCCAGCTCGAGCGTCTGGTAGCGGGTGTATGTCTGTCGGCCGCGTC
TTCGCAGACCATTTGTACCTAGCCAGTCTGGTAGAAGTGAGCCCGCAAGA
GATTCTGAGTATCTCTTACCCATGTCTGTTGATATGCCGCCGTATTGTGT
TAAATCAGATCTTATCTTACCTGCGATAGCCATCCAGGGGTAGAATGTGT
GATTGCTGGCCTGGTGTAAACTGCTGGCGGCCGCCGTTTGGGCAGCGGCG
CCCGAGATGGTGCAATTGGCATTCCAGGCAGTGCCCGCTCCGGCCACGCC
CACGCCGCTCTGTACGCCTCCGGCGTTGCCGTTGCCGCCGCTGACACTCA
CATTACCGCCGGCACTGCCGCCGCGATGGCTAACGGGACTGCCGCCCGAC
GTGTCCAAATAGCCGCCCACTCGGGAATCTGGGGTGCAGGCGGAGGGTCT
AACGGGCATACCGCCCGCCGGATTGTTCTGTCCGTTTGCATTGGCCGCAT
TACCGCCATTGGCATTGCCGGCTCCACCTGTTCCGCCCGCTCCGCCGCCA
CCACCGCCTCCGCCGCCACCCCCGCCGCCATTCGAGCCGCCCGTGTTCCA
AATGTCTTTGTAGCCATTCACCGCATCCGCCTTGATGTTCAAGCAGTCCT
GTTTGTAGGCTCGGGCTCCATCGCCGTATATCTTGTTGCAGGCGGCCGTG
ATGCTGGCATCGTAGGGCGAGTCC

BS08321.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10388-PE 1143 Ubx-RE 186..1143 974..17 4740 99.7 Minus
CG10388-PD 1092 Ubx-RD 186..745 974..415 2750 99.6 Minus
CG10388-PB 1041 Ubx-RB 186..742 974..418 2735 99.6 Minus
CG10388-PA 1170 Ubx-RA 186..741 974..419 2730 99.6 Minus
CG10388-PC 1119 Ubx-RC 186..741 974..419 2730 99.6 Minus
CG10388-PF 1068 Ubx-RF 186..741 974..419 2730 99.6 Minus
CG10388-PA 1170 Ubx-RA 767..1170 420..17 2020 100 Minus
CG10388-PD 1092 Ubx-RD 739..1092 370..17 1770 100 Minus
CG10388-PC 1119 Ubx-RC 767..1119 369..17 1765 100 Minus
CG10388-PB 1041 Ubx-RB 738..1041 320..17 1520 100 Minus
CG10388-PF 1068 Ubx-RF 767..1068 318..17 1510 100 Minus
CG1030-PA 1254 Scr-RA 1090..1146 184..128 210 94.7 Minus
CG1030-PB 1254 Scr-RB 1090..1146 184..128 210 94.7 Minus
CG1030-PC 1254 Scr-RC 1090..1146 184..128 210 94.7 Minus
CG1030-PA 1254 Scr-RA 989..1032 285..242 195 97.7 Minus
CG1030-PB 1254 Scr-RB 989..1032 285..242 195 97.7 Minus
CG1030-PC 1254 Scr-RC 989..1032 285..242 195 97.7 Minus
CG10325-PA 993 abd-A-RA 526..588 190..128 190 92 Minus
CG10325-PB 1773 abd-A-RB 1306..1368 190..128 190 92 Minus
CG2189-PA 1761 Dfd-RA 1217..1271 183..129 175 92.7 Minus
CG2047-PA 1233 ftz-RA 775..822 289..242 140 91.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
Ubx-RE 3117 CG10388-RE 1149..2107 974..16 4765 99.8 Minus
Ubx-RA 4282 CG10388-RA 1149..2134 974..16 4465 97.1 Minus
Ubx-RD 2784 CG10388-RD 1149..1708 974..415 2770 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16732723..16733278 419..974 2750 99.6 Plus
3R 32079331 3R 16658771..16659075 16..320 1525 100 Plus
3R 32079331 3R 6825490..6825647 128..285 490 87.3 Plus
3R 32079331 3R 16810131..16810338 97..304 395 79.3 Plus
3R 32079331 3R 6898359..6898531 127..299 385 81.5 Plus
3R 32079331 3R 16725250..16725309 364..423 300 100 Plus
3R 32079331 3R 16710559..16710613 316..370 275 100 Plus
3R 32079331 3R 6801029..6801183 283..129 250 77.4 Minus
Blast to na_te.dros performed on 2015-02-10 18:43:46 has no hits.

BS08321.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:25 Download gff for BS08321.3prime
Subject Subject Range Query Range Percent Splice Strand
Ubx-PE 186..1143 17..974 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:58 Download gff for BS08321.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10388-PE 186..1143 17..974 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:01:23 Download gff for BS08321.3prime
Subject Subject Range Query Range Percent Splice Strand
Ubx-RE 1349..2312 11..974 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:47 Download gff for BS08321.3prime
Subject Subject Range Query Range Percent Splice Strand
Ubx-RE 1149..2112 11..974 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:47 Download gff for BS08321.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16658766..16659073 11..318 99 <- Plus
3R 16710562..16710612 319..369 100 <- Plus
3R 16725256..16725306 370..420 100 <- Plus
3R 16732725..16733278 421..974 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:01:23 Download gff for BS08321.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12484488..12484795 11..318 99 <- Plus
arm_3R 12536284..12536334 319..369 100 <- Plus
arm_3R 12550978..12551028 370..420 100 <- Plus
arm_3R 12558447..12559000 421..974 99   Plus

BS08321.5prime Sequence

874 bp (757 high quality bases) assembled on 2006-01-10

> BS08321.5prime
GAAGTTATCAGTCGACATGAACTCGTACTTTGAACAGGCCTCCGGCTTTT
ATGGCCATCCGCACCAGGCCACCGGAATGGCAATGGGCAGCGGTGGCCAC
CACGACCAGACGGCCAGTGCAGCGGCGGCCGCGTACAGAGGATTCCCTCT
CTCGCTGGGCATGAGTCCCTATGCCAACCACCATCTGCAGCGCACCACCC
AGGACTCGCCCTACGATGCCAGCATCACGGCCGCCTGCAACAAGATATAC
GGCGATGGAGCCGGAGCCTACAAACAGGACTGCCTGAACATCAAGGCGGA
TGCGGTGAATGGCTACAAAGACATTTGGAACACGGGCGGCTCGAATGGCG
GCGGGGGTGGCGGCGGAGGCGGTGGTGGCGGCGGAGCGGGCGGAACAGGT
GGAGCCGGCAATGCCAATGGCGGTAATGCGGCCAATGCAAACGGACAGAA
CAATCCGGCGGGCGGTATGCCCGTTAGACCCTCCGCCTGCACCCCAGATT
CCCGAGTGGGCGGCTATTTGGACACGTCGGGCGGCAGTCCCGTTAGCCAT
CGCGGCGGCAGTGCCGGCGGTAATGTGAGTGTCAGCGGCGGCAACGGCAA
CGCCGGAGGCGTACAGAGCGGCGTGGGCGTGGCCGGAGCGGGCACTGCCT
GGAATGCCAATTGCACCATCTCGGGCGCCGCTGCCCAAACGGCGGCCGCC
AGCAGTTTACACCAGGCCAGCAATCACACATTCTACCCCTGGATGGCTAT
CGCAGGTAAGATAAGATCTGATTTAACACAATACGGCGGCATATCAACAG
ACATGGGTAAGAGATACTCAGAATCTCTTGCGGGCTCACTTCTACCAGAC
TGGCTAGGTACAAATGGTCTGCGA

BS08321.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10388-PE 1143 Ubx-RE 1..858 17..874 4290 100 Plus
CG10388-PD 1092 Ubx-RD 1..745 17..761 3725 100 Plus
CG10388-PB 1041 Ubx-RB 1..742 17..758 3710 100 Plus
CG10388-PA 1170 Ubx-RA 1..741 17..757 3705 100 Plus
CG10388-PC 1119 Ubx-RC 1..741 17..757 3705 100 Plus
CG10388-PF 1068 Ubx-RF 1..741 17..757 3705 100 Plus
CG10388-PA 1170 Ubx-RA 767..885 756..874 595 100 Plus
CG10388-PD 1092 Ubx-RD 739..807 806..874 345 100 Plus
CG10388-PC 1119 Ubx-RC 767..834 807..874 340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
Ubx-RE 3117 CG10388-RE 964..1821 17..874 4290 100 Plus
Ubx-RA 4282 CG10388-RA 964..1848 17..874 3990 96.9 Plus
Ubx-RD 2784 CG10388-RD 964..1708 17..761 3725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16732723..16733463 757..17 3705 100 Minus
3R 32079331 3R 16725250..16725309 812..753 300 100 Minus
3R 32079331 3R 16710559..16710613 860..806 275 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:30:46 has no hits.

BS08321.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:26 Download gff for BS08321.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubx-PE 1..857 17..873 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:36:59 Download gff for BS08321.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10388-PE 1..857 17..873 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:40:44 Download gff for BS08321.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubx-RE 1157..2020 9..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:00 Download gff for BS08321.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubx-RE 957..1820 9..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:00 Download gff for BS08321.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16659058..16659073 858..873 100 <- Minus
3R 16710562..16710612 807..857 100 <- Minus
3R 16725256..16725306 756..806 100 <- Minus
3R 16732725..16733470 9..755 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:40:44 Download gff for BS08321.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12484780..12484795 858..873 100 <- Minus
arm_3R 12536284..12536334 807..857 100 <- Minus
arm_3R 12550978..12551028 756..806 100 <- Minus
arm_3R 12558447..12559192 9..755 99   Minus

BS08321.complete Sequence

1175 bp (1175 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636139

> BS08321.complete
GAAGTTATCAGTCGACATGAACTCGTACTTTGAACAGGCCTCCGGCTTTT
ATGGCCATCCGCACCAGGCCACCGGAATGGCAATGGGCAGCGGTGGCCAC
CACGACCAGACGGCCAGTGCAGCGGCGGCCGCGTACAGAGGATTCCCTCT
CTCGCTGGGCATGAGTCCCTATGCCAACCACCATCTGCAGCGCACCACCC
AGGACTCGCCCTACGATGCCAGCATCACGGCCGCCTGCAACAAGATATAC
GGCGATGGAGCCGGAGCCTACAAACAGGACTGCCTGAACATCAAGGCGGA
TGCGGTGAATGGCTACAAAGACATTTGGAACACGGGCGGCTCGAATGGCG
GCGGGGGTGGCGGCGGAGGCGGTGGTGGCGGCGGAGCGGGCGGAACAGGT
GGAGCCGGCAATGCCAATGGCGGTAATGCGGCCAATGCAAACGGACAGAA
CAATCCGGCGGGCGGTATGCCCGTTAGACCCTCCGCCTGCACCCCAGATT
CCCGAGTGGGCGGCTATTTGGACACGTCGGGCGGCAGTCCCGTTAGCCAT
CGCGGCGGCAGTGCCGGCGGTAATGTGAGTGTCAGCGGCGGCAACGGCAA
CGCCGGAGGCGTACAGAGCGGCGTGGGCGTGGCCGGAGCGGGCACTGCCT
GGAATGCCAATTGCACCATCTCGGGCGCCGCTGCCCAAACGGCGGCCGCC
AGCAGTTTACACCAGGCCAGCAATCACACATTCTACCCCTGGATGGCTAT
CGCAGGTAAGATAAGATCTGATTTAACACAATACGGCGGCATATCAACAG
ACATGGGTAAGAGATACTCAGAATCTCTTGCGGGCTCACTTCTACCAGAC
TGGCTAGGTACAAATGGTCTGCGAAGACGCGGCCGACAGACATACACCCG
CTACCAGACGCTCGAGCTGGAGAAGGAGTTCCACACGAATCATTATCTGA
CCCGCAGACGGAGAATCGAGATGGCGCACGCGCTATGCCTGACGGAGCGG
CAGATCAAGATCTGGTTCCAGAACCGGCGAATGAAGCTGAAGAAGGAGAT
CCAGGCGATCAAGGAGCTGAACGAACAGGAGAAGCAGGCGCAGGCCCAGA
AGGCGGCGGCGGCAGCGGCTGCGGCGGCGGCGGTCCAAGGTGGACACTTA
GATCAGTAGAAGCTTTCTAGACCAT

BS08321.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
Ubx-RE 1143 CG10388-PE 1..1143 17..1159 5715 100 Plus
Ubx-RD 1092 CG10388-PD 1..745 17..761 3725 100 Plus
Ubx-RB 1041 CG10388-PB 1..742 17..758 3710 100 Plus
Ubx-RD 1092 CG10388-PD 739..1092 806..1159 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
Ubx-RE 3117 CG10388-RE 964..2107 17..1160 5720 100 Plus
Ubx-RD 2784 CG10388-RD 964..1708 17..761 3725 100 Plus
Ubx-RB 3628 CG10388-RB 964..1705 17..758 3710 100 Plus
Ubx-RD 2784 CG10388-RD 1702..2056 806..1160 1775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16732723..16733463 757..17 3705 100 Minus
3R 32079331 3R 16658771..16659075 1160..856 1525 100 Minus
3R 32079331 3R 6825490..6825647 1048..891 490 87.3 Minus
3R 32079331 3R 16810131..16810338 1079..872 395 79.3 Minus
3R 32079331 3R 6898359..6898531 1049..877 385 81.5 Minus
3R 32079331 3R 16725250..16725309 812..753 300 100 Minus
3R 32079331 3R 16710559..16710613 860..806 275 100 Minus
3R 32079331 3R 6801029..6801183 893..1047 250 77.4 Plus
Blast to na_te.dros performed on 2014-11-28 05:32:56 has no hits.

BS08321.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:38 Download gff for BS08321.complete
Subject Subject Range Query Range Percent Splice Strand
Ubx-RE 1..1143 17..1159 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:14 Download gff for BS08321.complete
Subject Subject Range Query Range Percent Splice Strand
Ubx-RE 1164..2306 17..1159 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:17 Download gff for BS08321.complete
Subject Subject Range Query Range Percent Splice Strand
Ubx-RE 1164..2306 17..1159 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:38 Download gff for BS08321.complete
Subject Subject Range Query Range Percent Splice Strand
Ubx-RE 1157..2312 9..1165 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:13:29 Download gff for BS08321.complete
Subject Subject Range Query Range Percent Splice Strand
Ubx-RE 964..2106 17..1159 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:13:29 Download gff for BS08321.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16658772..16659073 858..1159 100 <- Minus
3R 16710562..16710612 807..857 100 <- Minus
3R 16725256..16725306 756..806 100 <- Minus
3R 16732725..16733463 17..755 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:17 Download gff for BS08321.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12484494..12484795 858..1159 100 <- Minus
arm_3R 12536284..12536334 807..857 100 <- Minus
arm_3R 12550978..12551028 756..806 100 <- Minus
arm_3R 12558447..12559185 17..755 100   Minus

BS08321.pep Sequence

Translation from 16 to 1158

> BS08321.pep
MNSYFEQASGFYGHPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMS
PYANHHLQRTTQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGY
KDIWNTGGSNGGGGGGGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGG
MPVRPSACTPDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGVQ
SGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIAGKIR
SDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLE
LEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQAIKE
LNEQEKQAQAQKAAAAAAAAAAVQGGHLDQ*

BS08321.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
Ubx-PE 380 CG10388-PE 1..380 1..380 2023 100 Plus
Ubx-PA 389 CG10388-PA 1..389 1..380 2003 97.7 Plus
Ubx-PC 372 CG10388-PC 1..372 1..380 1924 96.1 Plus
Ubx-PD 363 CG10388-PD 1..363 1..380 1908 95.5 Plus
Ubx-PF 355 CG10388-PF 1..355 1..380 1817 91.6 Plus