Clone BS08324 Report

Search the DGRC for BS08324

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:83
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptMED27-RA
Protein status:BS08324.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08324.3prime Sequence

903 bp (805 high quality bases) assembled on 2006-01-10

> BS08324.3prime
ATGGTCTAGAAAGCTTCGTTAGCAATTTCGGCAGTCCTCGTGGAAGGGTT
CTAGAGTGCGCAGGTCCCGCCACGTCGGAGGCAATCCGTTCACCACGAAT
TTCCCACAACGCTTGCAGGGCTCCAGGAAAAGTTTGACGTGGCTGTTCAG
CCAGGTTATATAGCTTTTCACTGCCAGATCGGGCAACGTCGGCGAAAAGA
AATGCAGCATTGCTGAGTGAGCATGATCCTGGACTTTGCGGAACACCTCG
TAACGTGACTCGGCCCACAGGTCGTCATGCTCCAGCGGCTCATCGAATCC
CTTAACCGTAACCCACTCTATAAGCACTCCTTTGAAGACAATAGCCGCCT
TCATCACGTTACTTATTGTTACGATGGTGACAGCGTTTGTGCCGAAGGGA
CGAAAAATTCTGTACGAAGTATGCGGAGGGGTGTTGATCTCACTCAGGAG
CTTATCTATGTGGTCTGGATCGTTGTTGAAGGACGAGAAGGGCAGTCGCT
GGCGCTTCTGCGAGCAGTAATTGTAGGAGCGCCTGAGTGTGTTCTGGTTG
AGATTGTTGAAGGCCAAGAAGCTGTGGTCGTGCACCTTGTCCATCCACTT
GTAGCTGTTCACCAGCTGAGGGTATAGAGCCTGTCGATCCTGCGAAGTTT
CCTGCGCCAGGTAGGCGGTGTTCCCGAGAGAATAGGGTGTTGGTGGCACC
GGCAGTCCATTAATCAGCTGCTCTACCTCACGTATTTGCGAGTTGATGGC
TGCGAATCTCTCCTGGAAGTCATTTACGAACTTATTCCGGCTCTCCTCGC
CGCTCTCCCCATCGGTTTCATCGGCCAGGTGCTCGAAGCACAGCCTTACG
TTGGACCGCAGGTTTTTGACGGCAGTTAGAGTGGAATTTAACTTATCCAT
GTC

BS08324.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1245-PA 882 MED27-RA 1..882 900..19 4385 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
MED27-RA 1080 CG1245-RA 68..949 900..19 4395 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5655761..5656205 463..19 2225 100 Minus
3R 32079331 3R 5655433..5655700 731..464 1340 100 Minus
3R 32079331 3R 5655206..5655375 900..731 835 99.4 Minus
Blast to na_te.dros performed on 2015-02-02 18:16:01 has no hits.

BS08324.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:28 Download gff for BS08324.3prime
Subject Subject Range Query Range Percent Splice Strand
MED27-PA 1..882 19..900 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:37:01 Download gff for BS08324.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1245-PA 1..882 19..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:40:16 Download gff for BS08324.3prime
Subject Subject Range Query Range Percent Splice Strand
MED27-RA 65..955 10..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:27 Download gff for BS08324.3prime
Subject Subject Range Query Range Percent Splice Strand
MED27-RA 65..955 10..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:27 Download gff for BS08324.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5655203..5655375 731..903 98 -> Minus
3R 5655434..5655700 464..730 100 -> Minus
3R 5655761..5656211 10..463 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:40:16 Download gff for BS08324.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1480925..1481097 731..903 98 -> Minus
arm_3R 1481156..1481422 464..730 100 -> Minus
arm_3R 1481483..1481933 10..463 99   Minus

BS08324.5prime Sequence

500 bp (345 high quality bases) assembled on 2006-01-10

> BS08324.5prime
GAAGTTATCAGTCGACATGGATAAGTTAAATTCCACTCTAACTGCCGTCA
AAAACCTGCGGTCCAACGTAAGGCTGTGCTTCGAGCACCTGGCCGATGGA
ACCGATGGGGAGAGCGGCGAGGAGAGCCGGAATAAGTTCGTAAATGACTT
CCAGGAGAGATTCGCAGCCATCAACTCGCAAATACGTGAGGTAGAGCAGC
TGATTAATGGACTGCCGGTGCCACCAACACCCTATTCTCTCGGGAACACC
GCCTACCTGGCGCAGGAAACTTCGCAGGATCGACAGGCTCTATACCCTCA
GCTGGTGAACAGCTACAAGTGGATGGACAAGGTGCACGACCACAGCTTCT
TGGCCTTCAACAATCTCAACCAGAACACACTCAGGCGCTCCTACAATTAC
TGCTCGCAAAAGCGCCAGCGACTGCCCTTCTCGTCCTTCAACAACGATCC
AGACCACATAGATAAGCTCCTGAGTGAGATCAACACCCCTCCGCATACTT

BS08324.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1245-PA 882 MED27-RA 1..484 17..500 2395 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
MED27-RA 1080 CG1245-RA 68..551 17..500 2405 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5655433..5655700 186..453 1325 99.6 Plus
3R 32079331 3R 5655206..5655375 17..186 850 100 Plus
3R 32079331 3R 5655761..5655807 454..500 235 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:46:19 has no hits.

BS08324.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:29 Download gff for BS08324.5prime
Subject Subject Range Query Range Percent Splice Strand
MED27-PA 1..484 17..500 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:37:02 Download gff for BS08324.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1245-PA 1..484 17..500 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:21:04 Download gff for BS08324.5prime
Subject Subject Range Query Range Percent Splice Strand
MED27-RA 64..551 13..500 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:31:45 Download gff for BS08324.5prime
Subject Subject Range Query Range Percent Splice Strand
MED27-RA 64..551 13..500 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:31:45 Download gff for BS08324.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5655202..5655375 13..186 98 -> Plus
3R 5655434..5655700 187..453 99 -> Plus
3R 5655761..5655807 454..500 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:21:04 Download gff for BS08324.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1480924..1481097 13..186 98 -> Plus
arm_3R 1481156..1481422 187..453 99 -> Plus
arm_3R 1481483..1481529 454..500 100   Plus

BS08324.complete Sequence

916 bp (916 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636140

> BS08324.complete
GAAGTTATCAGTCGACATGGATAAGTTAAATTCCACTCTAACTGCCGTCA
AAAACCTGCGGTCCAACGTAAGGCTGTGCTTCGAGCACCTGGCCGATGGA
ACCGATGGGGAGAGCGGCGAGGAGAGCCGGAATAAGTTCGTAAATGACTT
CCAGGAGAGATTCGCAGCCATCAACTCGCAAATACGTGAGGTAGAGCAGC
TGATTAATGGACTGCCGGTGCCACCAACACCCTATTCTCTCGGGAACACC
GCCTACCTGGCGCAGGAAACTTCGCAGGATCGACAGGCTCTATACCCTCA
GCTGGTGAACAGCTACAAGTGGATGGACAAGGTGCACGACCACAGCTTCT
TGGCCTTCAACAATCTCAACCAGAACACACTCAGGCGCTCCTACAATTAC
TGCTCGCAGAAGCGCCAGCGACTGCCCTTCTCGTCCTTCAACAACGATCC
AGACCACATAGATAAGCTCCTGAGTGAGATCAACACCCCTCCGCATACTT
CGTACAGAATTTTTCGTCCCTTCGGCACAAACGCTGTCACCATCGTAACA
ATAAGTAACGTGATGAAGGCGGCTATTGTCTTCAAAGGAGTGCTTATAGA
GTGGGTTACGGTTAAGGGATTCGATGAGCCGCTGGAGCATGACGACCTGT
GGGCCGAGTCACGTTACGAGGTGTTCCGCAAAGTCCAGGATCATGCTCAC
TCAGCAATGCTGCATTTCTTTTCGCCGACGTTGCCCGATCTGGCAGTGAA
AAGCTATATAACCTGGCTGAACAGCCACGTCAAACTTTTCCTGGAGCCCT
GCAAGCGTTGTGGGAAATTCGTGGTGAACGGATTGCCTCCGACGTGGCGG
GACCTGCGCACTCTAGAACCCTTCCACGAGGACTGCCGAAATTGCTAACG
AAGCTTTCTAGACCAT

BS08324.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
MED27-RA 882 CG1245-PA 1..882 17..898 4410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
MED27-RA 1080 CG1245-RA 68..949 17..898 4410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5655761..5656205 454..898 2225 100 Plus
3R 32079331 3R 5655433..5655700 186..453 1340 100 Plus
3R 32079331 3R 5655206..5655375 17..186 850 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:51:15 has no hits.

BS08324.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:39 Download gff for BS08324.complete
Subject Subject Range Query Range Percent Splice Strand
MED27-RA 1..882 17..898 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:40 Download gff for BS08324.complete
Subject Subject Range Query Range Percent Splice Strand
MED27-RA 58..949 13..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:08 Download gff for BS08324.complete
Subject Subject Range Query Range Percent Splice Strand
MED27-RA 68..950 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:39 Download gff for BS08324.complete
Subject Subject Range Query Range Percent Splice Strand
MED27-RA 58..949 13..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:32 Download gff for BS08324.complete
Subject Subject Range Query Range Percent Splice Strand
MED27-RA 68..950 17..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:32 Download gff for BS08324.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5655206..5655375 17..186 100 -> Plus
3R 5655434..5655700 187..453 100 -> Plus
3R 5655761..5656206 454..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:08 Download gff for BS08324.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1480928..1481097 17..186 100 -> Plus
arm_3R 1481156..1481422 187..453 100 -> Plus
arm_3R 1481483..1481928 454..900 99   Plus

BS08324.pep Sequence

Translation from 16 to 897

> BS08324.pep
MDKLNSTLTAVKNLRSNVRLCFEHLADGTDGESGEESRNKFVNDFQERFA
AINSQIREVEQLINGLPVPPTPYSLGNTAYLAQETSQDRQALYPQLVNSY
KWMDKVHDHSFLAFNNLNQNTLRRSYNYCSQKRQRLPFSSFNNDPDHIDK
LLSEINTPPHTSYRIFRPFGTNAVTIVTISNVMKAAIVFKGVLIEWVTVK
GFDEPLEHDDLWAESRYEVFRKVQDHAHSAMLHFFSPTLPDLAVKSYITW
LNSHVKLFLEPCKRCGKFVVNGLPPTWRDLRTLEPFHEDCRNC*

BS08324.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
MED27-PA 293 CG1245-PA 1..293 1..293 1575 100 Plus