Clone Sequence Records
BS08324.3prime Sequence
903 bp (805 high quality bases) assembled on 2006-01-10
> BS08324.3prime
ATGGTCTAGAAAGCTTCGTTAGCAATTTCGGCAGTCCTCGTGGAAGGGTT
CTAGAGTGCGCAGGTCCCGCCACGTCGGAGGCAATCCGTTCACCACGAAT
TTCCCACAACGCTTGCAGGGCTCCAGGAAAAGTTTGACGTGGCTGTTCAG
CCAGGTTATATAGCTTTTCACTGCCAGATCGGGCAACGTCGGCGAAAAGA
AATGCAGCATTGCTGAGTGAGCATGATCCTGGACTTTGCGGAACACCTCG
TAACGTGACTCGGCCCACAGGTCGTCATGCTCCAGCGGCTCATCGAATCC
CTTAACCGTAACCCACTCTATAAGCACTCCTTTGAAGACAATAGCCGCCT
TCATCACGTTACTTATTGTTACGATGGTGACAGCGTTTGTGCCGAAGGGA
CGAAAAATTCTGTACGAAGTATGCGGAGGGGTGTTGATCTCACTCAGGAG
CTTATCTATGTGGTCTGGATCGTTGTTGAAGGACGAGAAGGGCAGTCGCT
GGCGCTTCTGCGAGCAGTAATTGTAGGAGCGCCTGAGTGTGTTCTGGTTG
AGATTGTTGAAGGCCAAGAAGCTGTGGTCGTGCACCTTGTCCATCCACTT
GTAGCTGTTCACCAGCTGAGGGTATAGAGCCTGTCGATCCTGCGAAGTTT
CCTGCGCCAGGTAGGCGGTGTTCCCGAGAGAATAGGGTGTTGGTGGCACC
GGCAGTCCATTAATCAGCTGCTCTACCTCACGTATTTGCGAGTTGATGGC
TGCGAATCTCTCCTGGAAGTCATTTACGAACTTATTCCGGCTCTCCTCGC
CGCTCTCCCCATCGGTTTCATCGGCCAGGTGCTCGAAGCACAGCCTTACG
TTGGACCGCAGGTTTTTGACGGCAGTTAGAGTGGAATTTAACTTATCCAT
GTC
BS08324.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1245-PA | 882 | MED27-RA | 1..882 | 900..19 | 4385 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:16:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED27-RA | 1080 | CG1245-RA | 68..949 | 900..19 | 4395 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:15:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5655761..5656205 | 463..19 | 2225 | 100 | Minus |
3R | 32079331 | 3R | 5655433..5655700 | 731..464 | 1340 | 100 | Minus |
3R | 32079331 | 3R | 5655206..5655375 | 900..731 | 835 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:16:01 has no hits.
BS08324.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:28 Download gff for
BS08324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-PA | 1..882 | 19..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:37:01 Download gff for
BS08324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1245-PA | 1..882 | 19..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:40:16 Download gff for
BS08324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-RA | 65..955 | 10..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:14:27 Download gff for
BS08324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-RA | 65..955 | 10..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:14:27 Download gff for
BS08324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5655203..5655375 | 731..903 | 98 | -> | Minus |
3R | 5655434..5655700 | 464..730 | 100 | -> | Minus |
3R | 5655761..5656211 | 10..463 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:40:16 Download gff for
BS08324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1480925..1481097 | 731..903 | 98 | -> | Minus |
arm_3R | 1481156..1481422 | 464..730 | 100 | -> | Minus |
arm_3R | 1481483..1481933 | 10..463 | 99 | | Minus |
BS08324.5prime Sequence
500 bp (345 high quality bases) assembled on 2006-01-10
> BS08324.5prime
GAAGTTATCAGTCGACATGGATAAGTTAAATTCCACTCTAACTGCCGTCA
AAAACCTGCGGTCCAACGTAAGGCTGTGCTTCGAGCACCTGGCCGATGGA
ACCGATGGGGAGAGCGGCGAGGAGAGCCGGAATAAGTTCGTAAATGACTT
CCAGGAGAGATTCGCAGCCATCAACTCGCAAATACGTGAGGTAGAGCAGC
TGATTAATGGACTGCCGGTGCCACCAACACCCTATTCTCTCGGGAACACC
GCCTACCTGGCGCAGGAAACTTCGCAGGATCGACAGGCTCTATACCCTCA
GCTGGTGAACAGCTACAAGTGGATGGACAAGGTGCACGACCACAGCTTCT
TGGCCTTCAACAATCTCAACCAGAACACACTCAGGCGCTCCTACAATTAC
TGCTCGCAAAAGCGCCAGCGACTGCCCTTCTCGTCCTTCAACAACGATCC
AGACCACATAGATAAGCTCCTGAGTGAGATCAACACCCCTCCGCATACTT
BS08324.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1245-PA | 882 | MED27-RA | 1..484 | 17..500 | 2395 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED27-RA | 1080 | CG1245-RA | 68..551 | 17..500 | 2405 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5655433..5655700 | 186..453 | 1325 | 99.6 | Plus |
3R | 32079331 | 3R | 5655206..5655375 | 17..186 | 850 | 100 | Plus |
3R | 32079331 | 3R | 5655761..5655807 | 454..500 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:46:19 has no hits.
BS08324.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:29 Download gff for
BS08324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-PA | 1..484 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:37:02 Download gff for
BS08324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1245-PA | 1..484 | 17..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:21:04 Download gff for
BS08324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-RA | 64..551 | 13..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:31:45 Download gff for
BS08324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-RA | 64..551 | 13..500 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:31:45 Download gff for
BS08324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5655202..5655375 | 13..186 | 98 | -> | Plus |
3R | 5655434..5655700 | 187..453 | 99 | -> | Plus |
3R | 5655761..5655807 | 454..500 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:21:04 Download gff for
BS08324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1480924..1481097 | 13..186 | 98 | -> | Plus |
arm_3R | 1481156..1481422 | 187..453 | 99 | -> | Plus |
arm_3R | 1481483..1481529 | 454..500 | 100 | | Plus |
BS08324.complete Sequence
916 bp (916 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636140
> BS08324.complete
GAAGTTATCAGTCGACATGGATAAGTTAAATTCCACTCTAACTGCCGTCA
AAAACCTGCGGTCCAACGTAAGGCTGTGCTTCGAGCACCTGGCCGATGGA
ACCGATGGGGAGAGCGGCGAGGAGAGCCGGAATAAGTTCGTAAATGACTT
CCAGGAGAGATTCGCAGCCATCAACTCGCAAATACGTGAGGTAGAGCAGC
TGATTAATGGACTGCCGGTGCCACCAACACCCTATTCTCTCGGGAACACC
GCCTACCTGGCGCAGGAAACTTCGCAGGATCGACAGGCTCTATACCCTCA
GCTGGTGAACAGCTACAAGTGGATGGACAAGGTGCACGACCACAGCTTCT
TGGCCTTCAACAATCTCAACCAGAACACACTCAGGCGCTCCTACAATTAC
TGCTCGCAGAAGCGCCAGCGACTGCCCTTCTCGTCCTTCAACAACGATCC
AGACCACATAGATAAGCTCCTGAGTGAGATCAACACCCCTCCGCATACTT
CGTACAGAATTTTTCGTCCCTTCGGCACAAACGCTGTCACCATCGTAACA
ATAAGTAACGTGATGAAGGCGGCTATTGTCTTCAAAGGAGTGCTTATAGA
GTGGGTTACGGTTAAGGGATTCGATGAGCCGCTGGAGCATGACGACCTGT
GGGCCGAGTCACGTTACGAGGTGTTCCGCAAAGTCCAGGATCATGCTCAC
TCAGCAATGCTGCATTTCTTTTCGCCGACGTTGCCCGATCTGGCAGTGAA
AAGCTATATAACCTGGCTGAACAGCCACGTCAAACTTTTCCTGGAGCCCT
GCAAGCGTTGTGGGAAATTCGTGGTGAACGGATTGCCTCCGACGTGGCGG
GACCTGCGCACTCTAGAACCCTTCCACGAGGACTGCCGAAATTGCTAACG
AAGCTTTCTAGACCAT
BS08324.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED27-RA | 882 | CG1245-PA | 1..882 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:51:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED27-RA | 1080 | CG1245-RA | 68..949 | 17..898 | 4410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5655761..5656205 | 454..898 | 2225 | 100 | Plus |
3R | 32079331 | 3R | 5655433..5655700 | 186..453 | 1340 | 100 | Plus |
3R | 32079331 | 3R | 5655206..5655375 | 17..186 | 850 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:51:15 has no hits.
BS08324.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:39 Download gff for
BS08324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-RA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:40 Download gff for
BS08324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-RA | 58..949 | 13..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:08 Download gff for
BS08324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-RA | 68..950 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:39 Download gff for
BS08324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-RA | 58..949 | 13..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:32 Download gff for
BS08324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED27-RA | 68..950 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:32 Download gff for
BS08324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5655206..5655375 | 17..186 | 100 | -> | Plus |
3R | 5655434..5655700 | 187..453 | 100 | -> | Plus |
3R | 5655761..5656206 | 454..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:08 Download gff for
BS08324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1480928..1481097 | 17..186 | 100 | -> | Plus |
arm_3R | 1481156..1481422 | 187..453 | 100 | -> | Plus |
arm_3R | 1481483..1481928 | 454..900 | 99 | | Plus |
BS08324.pep Sequence
Translation from 16 to 897
> BS08324.pep
MDKLNSTLTAVKNLRSNVRLCFEHLADGTDGESGEESRNKFVNDFQERFA
AINSQIREVEQLINGLPVPPTPYSLGNTAYLAQETSQDRQALYPQLVNSY
KWMDKVHDHSFLAFNNLNQNTLRRSYNYCSQKRQRLPFSSFNNDPDHIDK
LLSEINTPPHTSYRIFRPFGTNAVTIVTISNVMKAAIVFKGVLIEWVTVK
GFDEPLEHDDLWAESRYEVFRKVQDHAHSAMLHFFSPTLPDLAVKSYITW
LNSHVKLFLEPCKRCGKFVVNGLPPTWRDLRTLEPFHEDCRNC*
BS08324.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED27-PA | 293 | CG1245-PA | 1..293 | 1..293 | 1575 | 100 | Plus |