Clone BS08325 Report

Search the DGRC for BS08325

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:83
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptTaf13-RA
Protein status:BS08325.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08325.3prime Sequence

443 bp (442 high quality bases) assembled on 2006-01-10

> BS08325.3prime
ATGGTCTAGAAAGCTTCGTCATTTGAGCTTGCCTTCGGTGCCCACATACT
TGATCTCATCGAAGGCCTTTCGTGCCTTTTTCAACTCCTCGTTCATGGTC
AGAAGATCCTTCACCCTAGCGTACTTTCGGGGATCTTTGCGCACCAGGAA
GATAATGTCTTCGACTTGAACACGGCCTGTTCGACCGATCTCCATTGCCC
GGTGAGTGGTCTCAGCTATATACTCAATGACCAGGTCTTCCAACAGATCT
ACGGTTTCCGTGTATGGATTTTTGTCGTCTCCGAATCCGAACATCATGCA
GCGCAGCTCCTTGCTGAATAGGCGCTTTCGTCCTGAGTTGGTAGCCACAA
ATTGGTCATCCTCCGCGTCGTCATCAAAGTTGAAATCACCGCCCTCGAAA
TTCTCCTCTGGCATGCTATTTGAGGCCATGTCGACTGATAACT

BS08325.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10756-PA 411 Taf13-RA 1..411 429..19 2030 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
Taf13-RA 628 CG10756-RA 82..493 429..18 2045 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20093317..20093660 41..384 1705 99.7 Plus
2L 23513712 2L 20093724..20093768 385..429 225 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:34:11 has no hits.

BS08325.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:30 Download gff for BS08325.3prime
Subject Subject Range Query Range Percent Splice Strand
Taf13-PA 1..411 19..429 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:37:03 Download gff for BS08325.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10756-PA 1..411 19..429 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:53:46 Download gff for BS08325.3prime
Subject Subject Range Query Range Percent Splice Strand
Taf13-RA 76..500 9..436 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:53:57 Download gff for BS08325.3prime
Subject Subject Range Query Range Percent Splice Strand
Taf13-RA 76..500 9..436 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:53:57 Download gff for BS08325.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20093318..20093660 42..384 99 <- Plus
2L 20093724..20093774 385..436 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:53:46 Download gff for BS08325.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20093318..20093660 42..384 99 <- Plus
arm_2L 20093724..20093774 385..436 94   Plus

BS08325.5prime Sequence

443 bp (442 high quality bases) assembled on 2006-01-10

> BS08325.5prime
GAAGTTATCAGTCGACATGGCCTCAAATAGCATGCCAGAGGAGAATTTCG
AGGGCGGTGATTTCAACTTTGATGACGACGCGGAGGATGACCAATTTGTG
GCTACCAACTCAGGACGAAAGCGCCTATTCAGCAAGGAGCTGCGCTGCAT
GATGTTCGGATTCGGAGACGACAAAAATCCATACACGGAAACCGTAGATC
TGTTGGAAGACCTGGTCATTGAGTATATAGCTGAGACCACTCACCGGGCA
ATGGAGATCGGTCGAACAGGCCGTGTTCAAGTCGAAGACATTATCTTCCT
GGTGCGCAAAGATCCCCGAAAGTACGCTAGGGTGAAGGATCTTCTGACCA
TGAACGAGGAGTTGAAAAAGGCACGAAAGGCCTTCGATGAGATCAAGTAT
GTGGGCACCGAAGGCAAGCTCAAATGACGAAGCTTTCTAGACC

BS08325.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10756-PA 411 Taf13-RA 1..411 17..427 2030 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 10:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
Taf13-RA 628 CG10756-RA 82..493 17..428 2045 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 10:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20093317..20093660 405..62 1705 99.7 Minus
2L 23513712 2L 20093724..20093768 61..17 225 100 Minus
Blast to na_te.dros performed on 2015-02-09 10:04:36 has no hits.

BS08325.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:31 Download gff for BS08325.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf13-PA 1..411 17..427 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:37:05 Download gff for BS08325.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10756-PA 1..411 17..427 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:26:30 Download gff for BS08325.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf13-RA 76..500 10..437 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:55:24 Download gff for BS08325.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf13-RA 76..500 10..437 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:55:24 Download gff for BS08325.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20093318..20093660 62..404 99 <- Minus
2L 20093724..20093774 10..61 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:26:30 Download gff for BS08325.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20093318..20093660 62..404 99 <- Minus
arm_2L 20093724..20093774 10..61 94   Minus

BS08325.complete Sequence

445 bp (445 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636141

> BS08325.complete
GAAGTTATCAGTCGACATGGCCTCAAATAGCATGCCAGAGGAGAATTTCG
AGGGCGGTGATTTCAACTTTGATGACGACGCGGAGGATGACCAATTTGTG
GCTACCAACTCAGGACGAAAGCGCCTATTCAGCAAGGAGCTGCGCTGCAT
GATGTTCGGATTCGGAGACGACAAAAATCCATACACGGAAACCGTAGATC
TGTTGGAAGACCTGGTCATTGAGTATATAGCTGAGACCACTCACCGGGCA
ATGGAGATCGGTCGAACAGGCCGTGTTCAAGTCGAAGACATTATCTTCCT
GGTGCGCAAAGATCCCCGAAAGTACGCTAGGGTGAAGGATCTTCTGACCA
TGAACGAGGAGTTGAAAAAGGCACGAAAGGCCTTCGATGAGATCAAGTAT
GTGGGCACCGAAGGCAAGCTCAAATGACGAAGCTTTCTAGACCAT

BS08325.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
Taf13-RA 411 CG10756-PA 1..411 17..427 2040 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
Taf13-RA 628 CG10756-RA 82..493 17..428 2045 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20093317..20093660 405..62 1705 99.7 Minus
2L 23513712 2L 20093724..20093768 61..17 225 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:23:51 has no hits.

BS08325.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:50 Download gff for BS08325.complete
Subject Subject Range Query Range Percent Splice Strand
Taf13-RA 1..411 17..427 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:04 Download gff for BS08325.complete
Subject Subject Range Query Range Percent Splice Strand
Taf13-RA 73..497 10..437 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:16 Download gff for BS08325.complete
Subject Subject Range Query Range Percent Splice Strand
Taf13-RA 82..493 17..429 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:50 Download gff for BS08325.complete
Subject Subject Range Query Range Percent Splice Strand
Taf13-RA 73..497 10..437 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:38 Download gff for BS08325.complete
Subject Subject Range Query Range Percent Splice Strand
Taf13-RA 82..493 17..429 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:38 Download gff for BS08325.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20093221..20093246 405..429 96 <- Minus
2L 20093318..20093660 62..404 99 <- Minus
2L 20093724..20093768 17..61 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:16 Download gff for BS08325.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20093221..20093246 405..429 96 <- Minus
arm_2L 20093318..20093660 62..404 99 <- Minus
arm_2L 20093724..20093768 17..61 100   Minus

BS08325.pep Sequence

Translation from 16 to 426

> BS08325.pep
MASNSMPEENFEGGDFNFDDDAEDDQFVATNSGRKRLFSKELRCMMFGFG
DDKNPYTETVDLLEDLVIEYIAETTHRAMEIGRTGRVQVEDIIFLVRKDP
RKYARVKDLLTMNEELKKARKAFDEIKYVGTEGKLK*

BS08325.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
Taf13-PA 136 CG10756-PA 1..136 1..136 703 100 Plus