Clone Sequence Records
BS08328.3prime Sequence
858 bp (713 high quality bases) assembled on 2006-01-10
> BS08328.3prime
ATGGTCTAGAAAGCTTCGTCAGTAGCCATAAAGGTATGAGTACATGGGCA
CGAAGATGGACGGGCCCAGCTGGCGCTCCTGCGGCATGTGCGTCTTCATG
TGCTTCTTTAAGTGGTCGCGTCGGCCAAACTTCTTTCCGCAGGCACTGCA
AGGATACGGCCGCAGTCCGGTGTGGATTCGCTTGTGACGCGTCAGTTCCT
CATTGCGGGTGAAGGTCTTGCCGCATGTGTTCACGTCGCACTTAAATGGG
CGTTCGCCGGTGTGGATGCGGATGTGGCCCTTCAGCTGGCCGTTGTTGGA
GAAGGCCACGTCGCAGTTGGGGCACTTGAACTTCTTCGGCCGCTGCTTGC
GGCTGTTGAGCGCCTTTAACTGTGCGTCCTCGGCCATCACGCGGGCGTAC
TCTTGCTCCATCAGGCCCATAGTGAACGGGTCCATGCCGAAGCCCGGGAC
GGCAGTGGGCGTGGAGGCAGCAGCGGCTGCTGCGGCGGCGGCAGCGTAGT
AGAGATCGCTGGCGGCCGACAGGAATGGAGCGTGCTGGTTTGGCGGAGCC
AAGGATGCGGTGGCGGCGGCGTGCGTGTCCAACGGCGACGACTGCGGGTG
TGAAAAGACGGGGTGCGGGGCGGCGTCCAGCAGCGGGGTGGAAGTGCGGG
TGTAGCTGCTGTGGTTCAGGGCCTCCTCGTAGCAGGACTTGCTGCTGTTG
CTGCTGCTTGACGCAGAGGAGGATGCGGAGGAGAAGTCTCCGTCGCAGTC
GTGGCCGAAACTGCTGCTGGCCAGCTCCGTCTTGATGGTAATCGCCTCCG
GCTCCTGCTTCACTGTCCTGGGTGCCGCCGAAGTCGCCGCCTGGCGCTGA
GTATCCCA
BS08328.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9768-PA | 894 | hkb-RA | 55..894 | 858..19 | 4175 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:10:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hkb-RA | 1567 | CG9768-RA | 198..1037 | 858..19 | 4185 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4345848..4346449 | 257..858 | 2995 | 99.8 | Plus |
3R | 32079331 | 3R | 4345545..4345784 | 19..258 | 1200 | 100 | Plus |
Blast to na_te.dros performed 2015-02-01 07:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6862 | 769..644 | 169 | 61.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2529 | 855..637 | 131 | 54.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2448 | 728..637 | 115 | 59.8 | Minus |
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 1935..2020 | 143..57 | 108 | 59.8 | Minus |
BS08328.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:36 Download gff for
BS08328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hkb-PA | 56..894 | 19..857 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:37:12 Download gff for
BS08328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9768-PA | 56..894 | 19..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:11:30 Download gff for
BS08328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hkb-RA | 199..1039 | 16..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:41:31 Download gff for
BS08328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hkb-RA | 199..1039 | 16..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:41:31 Download gff for
BS08328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4345543..4345783 | 16..257 | 99 | <- | Plus |
3R | 4345849..4346448 | 258..857 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:11:30 Download gff for
BS08328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 171265..171505 | 16..257 | 99 | <- | Plus |
arm_3R | 171571..172170 | 258..857 | 99 | | Plus |
BS08328.5prime Sequence
790 bp (789 high quality bases) assembled on 2006-01-10
> BS08328.5prime
GAAGTTATCAGTCGACATGTCGACGATTAACCTGCATCCCCCGCAAACCT
ACTCGCGACTTTTCCGACCCTGGGATACTCAGCGCCAGGCGGCGACCTCG
GCGGCACCCAGGACAGTGAAGCAGGAGCCGGAGGCGATTACCATCAAGAC
GGAGCTGGCCAGCAGCAGTTTCGGCCACGACTGCGACGGAGACTTCTCCT
CCGCATCCTCCTCTGCGTCAAGCAGCAGCAACAGCAGCAAGTCCTGCTAC
GAGGAGGCCCTGAACCACAGCAGCTACACCCGCACTTCCACCCCGCTGCT
GGACGCCGCCCCGCACCCCGTCTTTTCACACCCGCAGTCGTCGCCGTTGG
ACACGCACGCCGCCGCCACCGCATCCTTGGCTCCGCCAAACCAGCACGCT
CCATTCCTGTCGGCCGCCAGCGATCTCTACTACGCTGCCGCCGCCGCAGC
AGCCGCTGCTGCCTCCACGCCCACTGCCGTCCCGGGCTTCGGCATGGACC
CGTTCACTATGGGCCTGATGGAGCAAGAGTACGCCCGCGTGATGGCCGAG
GACGCACAGTTAAAGGCGCTCAACAGCCGCAAGCAGCGGCCGAAGAAGTT
CAAGTGCCCCAACTGCGACGTGGCCTTCTCCAACAACGGCCAGCTGAAGG
GCCACATCCGCATCCACACCGGCGAACGCCCATTTAAGTGCGACGTGAAC
ACATGCGGCAAGACCTTCACCCGCAATGAGGAACTGACGCGTCACAAGCG
AATCCACACCGGACTGCGGCCGTATCCTTGCAGTGCCTGC
BS08328.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9768-PA | 894 | hkb-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hkb-RA | 1567 | CG9768-RA | 144..917 | 17..790 | 3870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4345848..4346503 | 672..17 | 3280 | 100 | Minus |
3R | 32079331 | 3R | 4345665..4345784 | 790..671 | 600 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 10:54:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6862 | 160..285 | 169 | 61.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2529 | 74..292 | 131 | 54.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2448 | 201..292 | 115 | 59.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6868 | 160..285 | 108 | 58.7 | Plus |
BS08328.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:38 Download gff for
BS08328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hkb-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:37:13 Download gff for
BS08328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9768-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:12:07 Download gff for
BS08328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hkb-RA | 144..917 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:51 Download gff for
BS08328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hkb-RA | 144..917 | 17..790 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:51 Download gff for
BS08328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4345665..4345783 | 672..790 | 100 | <- | Minus |
3R | 4345849..4346503 | 17..671 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:12:07 Download gff for
BS08328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 171387..171505 | 672..790 | 100 | <- | Minus |
arm_3R | 171571..172225 | 17..671 | 100 | | Minus |
BS08328.complete Sequence
928 bp (928 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636142
> BS08328.complete
GAAGTTATCAGTCGACATGTCGACGATTAACCTGCATCCCCCGCAAACCT
ACTCGCGACTTTTCCGACCCTGGGATACTCAGCGCCAGGCGGCGACCTCG
GCGGCACCCAGGACAGTGAAGCAGGAGCCGGAGGCGATTACCATCAAGAC
GGAGCTGGCCAGCAGCAGTTTCGGCCACGACTGCGACGGAGACTTCTCCT
CCGCATCCTCCTCTGCGTCAAGCAGCAGCAACAGCAGCAAGTCCTGCTAC
GAGGAGGCCCTGAACCACAGCAGCTACACCCGCACTTCCACCCCGCTGCT
GGACGCCGCCCCGCACCCCGTCTTTTCACACCCGCAGTCGTCGCCGTTGG
ACACGCACGCCGCCGCCACCGCATCCTTGGCTCCGCCAAACCAGCACGCT
CCATTCCTGTCGGCCGCCAGCGATCTCTACTACGCTGCCGCCGCCGCAGC
AGCCGCTGCTGCCTCCACGCCCACTGCCGTCCCGGGCTTCGGCATGGACC
CGTTCACTATGGGCCTGATGGAGCAAGAGTACGCCCGCGTGATGGCCGAG
GACGCACAGTTAAAGGCGCTCAACAGCCGCAAGCAGCGGCCGAAGAAGTT
CAAGTGCCCCAACTGCGACGTGGCCTTCTCCAACAACGGCCAGCTGAAGG
GCCACATCCGCATCCACACCGGCGAACGCCCATTTAAGTGCGACGTGAAC
ACATGCGGCAAGACCTTCACCCGCAATGAGGAACTGACGCGTCACAAGCG
AATCCACACCGGACTGCGGCCGTATCCTTGCAGTGCCTGCGGAAAGAAGT
TTGGCCGACGCGACCACTTAAAGAAGCACATGAAGACGCACATGCCGCAG
GAGCGCCAGCTGGGCCCGTCCATCTTCGTGCCCATGTACTCATACCTTTA
TGGCTACTGACGAAGCTTTCTAGACCAT
BS08328.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:25:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hkb-RA | 894 | CG9768-PA | 1..894 | 17..910 | 4470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hkb-RA | 1567 | CG9768-RA | 144..1037 | 17..910 | 4470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4345848..4346503 | 672..17 | 3280 | 100 | Minus |
3R | 32079331 | 3R | 4345545..4345784 | 910..671 | 1200 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:25:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6862 | 160..285 | 169 | 61.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2529 | 74..292 | 131 | 54.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2448 | 201..292 | 115 | 59.8 | Plus |
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 1935..2020 | 786..872 | 108 | 59.8 | Plus |
BS08328.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:41 Download gff for
BS08328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hkb-RA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:42 Download gff for
BS08328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hkb-RA | 148..1043 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:38 Download gff for
BS08328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hkb-RA | 144..1038 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:41 Download gff for
BS08328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hkb-RA | 148..1043 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:11 Download gff for
BS08328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hkb-RA | 144..1038 | 17..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:11 Download gff for
BS08328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4345544..4345783 | 672..912 | 99 | <- | Minus |
3R | 4345849..4346503 | 17..671 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:38 Download gff for
BS08328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 171266..171505 | 672..912 | 99 | <- | Minus |
arm_3R | 171571..172225 | 17..671 | 100 | | Minus |
BS08328.pep Sequence
Translation from 16 to 909
> BS08328.pep
MSTINLHPPQTYSRLFRPWDTQRQAATSAAPRTVKQEPEAITIKTELASS
SFGHDCDGDFSSASSSASSSSNSSKSCYEEALNHSSYTRTSTPLLDAAPH
PVFSHPQSSPLDTHAAATASLAPPNQHAPFLSAASDLYYAAAAAAAAAAS
TPTAVPGFGMDPFTMGLMEQEYARVMAEDAQLKALNSRKQRPKKFKCPNC
DVAFSNNGQLKGHIRIHTGERPFKCDVNTCGKTFTRNEELTRHKRIHTGL
RPYPCSACGKKFGRRDHLKKHMKTHMPQERQLGPSIFVPMYSYLYGY*
BS08328.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hkb-PA | 297 | CG9768-PA | 1..297 | 1..297 | 1582 | 100 | Plus |
btd-PA | 644 | CG12653-PA | 151..418 | 61..280 | 272 | 31.5 | Plus |
cbt-PC | 347 | CG4427-PC | 31..264 | 40..275 | 270 | 31.2 | Plus |
cbt-PB | 347 | CG4427-PB | 31..264 | 40..275 | 270 | 31.2 | Plus |
cbt-PA | 428 | CG4427-PA | 112..345 | 40..275 | 270 | 31.2 | Plus |