Clone BS08328 Report

Search the DGRC for BS08328

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:83
Well:28
Vector:pDNR-Dual
Associated Gene/Transcripthkb-RA
Protein status:BS08328.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08328.3prime Sequence

858 bp (713 high quality bases) assembled on 2006-01-10

> BS08328.3prime
ATGGTCTAGAAAGCTTCGTCAGTAGCCATAAAGGTATGAGTACATGGGCA
CGAAGATGGACGGGCCCAGCTGGCGCTCCTGCGGCATGTGCGTCTTCATG
TGCTTCTTTAAGTGGTCGCGTCGGCCAAACTTCTTTCCGCAGGCACTGCA
AGGATACGGCCGCAGTCCGGTGTGGATTCGCTTGTGACGCGTCAGTTCCT
CATTGCGGGTGAAGGTCTTGCCGCATGTGTTCACGTCGCACTTAAATGGG
CGTTCGCCGGTGTGGATGCGGATGTGGCCCTTCAGCTGGCCGTTGTTGGA
GAAGGCCACGTCGCAGTTGGGGCACTTGAACTTCTTCGGCCGCTGCTTGC
GGCTGTTGAGCGCCTTTAACTGTGCGTCCTCGGCCATCACGCGGGCGTAC
TCTTGCTCCATCAGGCCCATAGTGAACGGGTCCATGCCGAAGCCCGGGAC
GGCAGTGGGCGTGGAGGCAGCAGCGGCTGCTGCGGCGGCGGCAGCGTAGT
AGAGATCGCTGGCGGCCGACAGGAATGGAGCGTGCTGGTTTGGCGGAGCC
AAGGATGCGGTGGCGGCGGCGTGCGTGTCCAACGGCGACGACTGCGGGTG
TGAAAAGACGGGGTGCGGGGCGGCGTCCAGCAGCGGGGTGGAAGTGCGGG
TGTAGCTGCTGTGGTTCAGGGCCTCCTCGTAGCAGGACTTGCTGCTGTTG
CTGCTGCTTGACGCAGAGGAGGATGCGGAGGAGAAGTCTCCGTCGCAGTC
GTGGCCGAAACTGCTGCTGGCCAGCTCCGTCTTGATGGTAATCGCCTCCG
GCTCCTGCTTCACTGTCCTGGGTGCCGCCGAAGTCGCCGCCTGGCGCTGA
GTATCCCA

BS08328.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9768-PA 894 hkb-RA 55..894 858..19 4175 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
hkb-RA 1567 CG9768-RA 198..1037 858..19 4185 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4345848..4346449 257..858 2995 99.8 Plus
3R 32079331 3R 4345545..4345784 19..258 1200 100 Plus
Blast to na_te.dros performed 2015-02-01 07:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6862 769..644 169 61.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2301..2529 855..637 131 54.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2448 728..637 115 59.8 Minus
gypsy3 6973 gypsy3 GYPSY3 6973bp 1935..2020 143..57 108 59.8 Minus

BS08328.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:36 Download gff for BS08328.3prime
Subject Subject Range Query Range Percent Splice Strand
hkb-PA 56..894 19..857 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:37:12 Download gff for BS08328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9768-PA 56..894 19..857 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:11:30 Download gff for BS08328.3prime
Subject Subject Range Query Range Percent Splice Strand
hkb-RA 199..1039 16..857 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:41:31 Download gff for BS08328.3prime
Subject Subject Range Query Range Percent Splice Strand
hkb-RA 199..1039 16..857 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:41:31 Download gff for BS08328.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4345543..4345783 16..257 99 <- Plus
3R 4345849..4346448 258..857 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:11:30 Download gff for BS08328.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 171265..171505 16..257 99 <- Plus
arm_3R 171571..172170 258..857 99   Plus

BS08328.5prime Sequence

790 bp (789 high quality bases) assembled on 2006-01-10

> BS08328.5prime
GAAGTTATCAGTCGACATGTCGACGATTAACCTGCATCCCCCGCAAACCT
ACTCGCGACTTTTCCGACCCTGGGATACTCAGCGCCAGGCGGCGACCTCG
GCGGCACCCAGGACAGTGAAGCAGGAGCCGGAGGCGATTACCATCAAGAC
GGAGCTGGCCAGCAGCAGTTTCGGCCACGACTGCGACGGAGACTTCTCCT
CCGCATCCTCCTCTGCGTCAAGCAGCAGCAACAGCAGCAAGTCCTGCTAC
GAGGAGGCCCTGAACCACAGCAGCTACACCCGCACTTCCACCCCGCTGCT
GGACGCCGCCCCGCACCCCGTCTTTTCACACCCGCAGTCGTCGCCGTTGG
ACACGCACGCCGCCGCCACCGCATCCTTGGCTCCGCCAAACCAGCACGCT
CCATTCCTGTCGGCCGCCAGCGATCTCTACTACGCTGCCGCCGCCGCAGC
AGCCGCTGCTGCCTCCACGCCCACTGCCGTCCCGGGCTTCGGCATGGACC
CGTTCACTATGGGCCTGATGGAGCAAGAGTACGCCCGCGTGATGGCCGAG
GACGCACAGTTAAAGGCGCTCAACAGCCGCAAGCAGCGGCCGAAGAAGTT
CAAGTGCCCCAACTGCGACGTGGCCTTCTCCAACAACGGCCAGCTGAAGG
GCCACATCCGCATCCACACCGGCGAACGCCCATTTAAGTGCGACGTGAAC
ACATGCGGCAAGACCTTCACCCGCAATGAGGAACTGACGCGTCACAAGCG
AATCCACACCGGACTGCGGCCGTATCCTTGCAGTGCCTGC

BS08328.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9768-PA 894 hkb-RA 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
hkb-RA 1567 CG9768-RA 144..917 17..790 3870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4345848..4346503 672..17 3280 100 Minus
3R 32079331 3R 4345665..4345784 790..671 600 100 Minus
Blast to na_te.dros performed 2015-02-11 10:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6862 160..285 169 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2301..2529 74..292 131 54.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2448 201..292 115 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6868 160..285 108 58.7 Plus

BS08328.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:38 Download gff for BS08328.5prime
Subject Subject Range Query Range Percent Splice Strand
hkb-PA 1..774 17..790 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:37:13 Download gff for BS08328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9768-PA 1..774 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:12:07 Download gff for BS08328.5prime
Subject Subject Range Query Range Percent Splice Strand
hkb-RA 144..917 17..790 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:51 Download gff for BS08328.5prime
Subject Subject Range Query Range Percent Splice Strand
hkb-RA 144..917 17..790 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:51 Download gff for BS08328.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4345665..4345783 672..790 100 <- Minus
3R 4345849..4346503 17..671 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:12:07 Download gff for BS08328.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 171387..171505 672..790 100 <- Minus
arm_3R 171571..172225 17..671 100   Minus

BS08328.complete Sequence

928 bp (928 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636142

> BS08328.complete
GAAGTTATCAGTCGACATGTCGACGATTAACCTGCATCCCCCGCAAACCT
ACTCGCGACTTTTCCGACCCTGGGATACTCAGCGCCAGGCGGCGACCTCG
GCGGCACCCAGGACAGTGAAGCAGGAGCCGGAGGCGATTACCATCAAGAC
GGAGCTGGCCAGCAGCAGTTTCGGCCACGACTGCGACGGAGACTTCTCCT
CCGCATCCTCCTCTGCGTCAAGCAGCAGCAACAGCAGCAAGTCCTGCTAC
GAGGAGGCCCTGAACCACAGCAGCTACACCCGCACTTCCACCCCGCTGCT
GGACGCCGCCCCGCACCCCGTCTTTTCACACCCGCAGTCGTCGCCGTTGG
ACACGCACGCCGCCGCCACCGCATCCTTGGCTCCGCCAAACCAGCACGCT
CCATTCCTGTCGGCCGCCAGCGATCTCTACTACGCTGCCGCCGCCGCAGC
AGCCGCTGCTGCCTCCACGCCCACTGCCGTCCCGGGCTTCGGCATGGACC
CGTTCACTATGGGCCTGATGGAGCAAGAGTACGCCCGCGTGATGGCCGAG
GACGCACAGTTAAAGGCGCTCAACAGCCGCAAGCAGCGGCCGAAGAAGTT
CAAGTGCCCCAACTGCGACGTGGCCTTCTCCAACAACGGCCAGCTGAAGG
GCCACATCCGCATCCACACCGGCGAACGCCCATTTAAGTGCGACGTGAAC
ACATGCGGCAAGACCTTCACCCGCAATGAGGAACTGACGCGTCACAAGCG
AATCCACACCGGACTGCGGCCGTATCCTTGCAGTGCCTGCGGAAAGAAGT
TTGGCCGACGCGACCACTTAAAGAAGCACATGAAGACGCACATGCCGCAG
GAGCGCCAGCTGGGCCCGTCCATCTTCGTGCCCATGTACTCATACCTTTA
TGGCTACTGACGAAGCTTTCTAGACCAT

BS08328.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
hkb-RA 894 CG9768-PA 1..894 17..910 4470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
hkb-RA 1567 CG9768-RA 144..1037 17..910 4470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4345848..4346503 672..17 3280 100 Minus
3R 32079331 3R 4345545..4345784 910..671 1200 100 Minus
Blast to na_te.dros performed 2014-11-27 14:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6862 160..285 169 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2301..2529 74..292 131 54.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2448 201..292 115 59.8 Plus
gypsy3 6973 gypsy3 GYPSY3 6973bp 1935..2020 786..872 108 59.8 Plus

BS08328.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:41 Download gff for BS08328.complete
Subject Subject Range Query Range Percent Splice Strand
hkb-RA 1..894 17..910 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:42 Download gff for BS08328.complete
Subject Subject Range Query Range Percent Splice Strand
hkb-RA 148..1043 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:38 Download gff for BS08328.complete
Subject Subject Range Query Range Percent Splice Strand
hkb-RA 144..1038 17..912 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:41 Download gff for BS08328.complete
Subject Subject Range Query Range Percent Splice Strand
hkb-RA 148..1043 17..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:11 Download gff for BS08328.complete
Subject Subject Range Query Range Percent Splice Strand
hkb-RA 144..1038 17..912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:11 Download gff for BS08328.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4345544..4345783 672..912 99 <- Minus
3R 4345849..4346503 17..671 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:38 Download gff for BS08328.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 171266..171505 672..912 99 <- Minus
arm_3R 171571..172225 17..671 100   Minus

BS08328.pep Sequence

Translation from 16 to 909

> BS08328.pep
MSTINLHPPQTYSRLFRPWDTQRQAATSAAPRTVKQEPEAITIKTELASS
SFGHDCDGDFSSASSSASSSSNSSKSCYEEALNHSSYTRTSTPLLDAAPH
PVFSHPQSSPLDTHAAATASLAPPNQHAPFLSAASDLYYAAAAAAAAAAS
TPTAVPGFGMDPFTMGLMEQEYARVMAEDAQLKALNSRKQRPKKFKCPNC
DVAFSNNGQLKGHIRIHTGERPFKCDVNTCGKTFTRNEELTRHKRIHTGL
RPYPCSACGKKFGRRDHLKKHMKTHMPQERQLGPSIFVPMYSYLYGY*

BS08328.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
hkb-PA 297 CG9768-PA 1..297 1..297 1582 100 Plus
btd-PA 644 CG12653-PA 151..418 61..280 272 31.5 Plus
cbt-PC 347 CG4427-PC 31..264 40..275 270 31.2 Plus
cbt-PB 347 CG4427-PB 31..264 40..275 270 31.2 Plus
cbt-PA 428 CG4427-PA 112..345 40..275 270 31.2 Plus