Clone Sequence Records
BS08329.3prime Sequence
707 bp (706 high quality bases) assembled on 2006-01-10
> BS08329.3prime
ATGGTCTAGAAAGCTTCGCTACGTCTTGCGAAAACTTAGTAAAATAGGTG
ATATCGCCTCCAGGCAGTCCATAATGTCCTTGCGCGACTTGGCGCCCGTA
AATACAACCTTTCCGTTGACGAAGATCAGGAGAACGATGCGCGGCTTGAC
CATGCGATAGATTAGGCCTGGAAACATCTCCGGTTCGTAGGAACTAAACT
GCCCGTGCACGTGGTTGAGGTTCTCCAGGCGGATGGGGAAGCGCAGATCA
ACGGTGGCCACAATATTCTGCAGCTTGTATTCCATGAACTTTACGGGGAA
TCCCAGCTTCTGCAGGATGCGTGCGAACTTTCGCGATCCAATGTCCGCCT
CAATCTCGTTTCGTGCACCCGTGCAGATGACCTTGCCCGTTCGAAAGATT
AGCGCTGTGCACCTGGGCGAGTGCATTCGCATGATGACGCCACGAAAGCG
CTTGGGCGAGTACTCCGAGTTCCTCGTACGCGAGTTGATTGCCTTGAGGT
CCAGTTCACAGTTCACCGAGAAGGTGGCCACGATATTCTGCAATCGTATC
TCATGTTGTGCATCCTTGGGCTCCACCAGGGCAACGGGCTGTTGCGGCTG
CAGGGCTGCGTGCGGATTGGCGGCAGCATTGCTGGTCGCAGCCACATTAT
CCCTGTCCCTTTCAGCGTCCGCGACTTTAAAGTGAAACTGCATGTCGACT
GATAACT
BS08329.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7562-PA | 675 | Trf-RA | 1..675 | 693..19 | 3375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trf-RA | 983 | CG7562-RA | 77..751 | 693..19 | 3375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8073197..8073716 | 538..19 | 2600 | 100 | Minus |
| 2L | 23513712 | 2L | 8072971..8073126 | 693..538 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:53:42 has no hits.
BS08329.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:39 Download gff for
BS08329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf-PA | 1..675 | 19..693 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:37:15 Download gff for
BS08329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7562-PA | 1..675 | 19..693 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:01:58 Download gff for
BS08329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf-RA | 71..751 | 19..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:53 Download gff for
BS08329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf-RA | 71..751 | 19..702 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:53 Download gff for
BS08329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8072965..8073125 | 539..702 | 97 | -> | Minus |
| 2L | 8073197..8073716 | 19..538 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:01:58 Download gff for
BS08329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8072965..8073125 | 539..702 | 97 | -> | Minus |
| arm_2L | 8073197..8073716 | 19..538 | 100 | | Minus |
BS08329.5prime Sequence
320 bp (317 high quality bases) assembled on 2006-01-10
> BS08329.5prime
GAAGTTATCAGTCGACATGCAGTTTCACTTTAAAGTCGCGGACGCTGAAA
GGGACAGGGATAATGTGGCTGCGACCAGCAATGCTGCCGCCAATCCGCAC
GCAGCCCTGCAGCCGCAACAGCCCGTTGCCCTGGTGGAGCCCAAGGATGC
ACAACATGAGATACGATTGCAGAATATCGTGGCCACCTTCTCGGTGAACT
GTGAACTGGACCTCAAGGCAATCAACTCGCGTACGAGGAACTCGGAGTAC
TCGCCCAAGCGCTTTCGTGGCGTCATCATGCGAATGCACTCGCCCAGGTG
CACAGCGCTAATCTTTCGAA
BS08329.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7562-PA | 675 | Trf-RA | 1..304 | 17..320 | 1520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:04:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trf-RA | 983 | CG7562-RA | 77..380 | 17..320 | 1520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:04:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8072971..8073126 | 17..172 | 780 | 100 | Plus |
| 2L | 23513712 | 2L | 8073197..8073345 | 172..320 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:04:37 has no hits.
BS08329.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:39 Download gff for
BS08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf-PA | 1..302 | 17..318 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:37:16 Download gff for
BS08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7562-PA | 1..302 | 17..318 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:42:00 Download gff for
BS08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf-RA | 71..380 | 8..320 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:13:11 Download gff for
BS08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf-RA | 71..380 | 8..320 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:13:11 Download gff for
BS08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8072965..8073125 | 8..171 | 97 | -> | Plus |
| 2L | 8073197..8073345 | 172..320 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:42:00 Download gff for
BS08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8072965..8073125 | 8..171 | 97 | -> | Plus |
| arm_2L | 8073197..8073345 | 172..320 | 100 | | Plus |
BS08329.complete Sequence
709 bp (709 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636143
> BS08329.complete
GAAGTTATCAGTCGACATGCAGTTTCACTTTAAAGTCGCGGACGCTGAAA
GGGACAGGGATAATGTGGCTGCGACCAGCAATGCTGCCGCCAATCCGCAC
GCAGCCCTGCAGCCGCAACAGCCCGTTGCCCTGGTGGAGCCCAAGGATGC
ACAACATGAGATACGATTGCAGAATATCGTGGCCACCTTCTCGGTGAACT
GTGAACTGGACCTCAAGGCAATCAACTCGCGTACGAGGAACTCGGAGTAC
TCGCCCAAGCGCTTTCGTGGCGTCATCATGCGAATGCACTCGCCCAGGTG
CACAGCGCTAATCTTTCGAACGGGCAAGGTCATCTGCACGGGTGCACGAA
ACGAGATTGAGGCGGACATTGGATCGCGAAAGTTCGCACGCATCCTGCAG
AAGCTGGGATTCCCCGTAAAGTTCATGGAATACAAGCTGCAGAATATTGT
GGCCACCGTTGATCTGCGCTTCCCCATCCGCCTGGAGAACCTCAACCACG
TGCACGGGCAGTTTAGTTCCTACGAACCGGAGATGTTTCCAGGCCTAATC
TATCGCATGGTCAAGCCGCGCATCGTTCTCCTGATCTTCGTCAACGGAAA
GGTTGTATTTACGGGCGCCAAGTCGCGCAAGGACATTATGGACTGCCTGG
AGGCGATATCACCTATTTTACTAAGTTTTCGCAAGACGTAGCGAAGCTTT
CTAGACCAT
BS08329.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trf-RA | 675 | CG7562-PA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trf-RA | 983 | CG7562-RA | 77..751 | 17..691 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8073197..8073716 | 172..691 | 2600 | 100 | Plus |
| 2L | 23513712 | 2L | 8072971..8073126 | 17..172 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:03:09 has no hits.
BS08329.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:24 Download gff for
BS08329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf-RA | 1..675 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:24 Download gff for
BS08329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf-RA | 69..749 | 8..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:32 Download gff for
BS08329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf-RA | 77..751 | 17..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:26 Download gff for
BS08329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf-RA | 69..749 | 8..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:35 Download gff for
BS08329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf-RA | 77..751 | 17..693 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:35 Download gff for
BS08329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8072971..8073125 | 17..171 | 100 | -> | Plus |
| 2L | 8073197..8073716 | 172..693 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:32 Download gff for
BS08329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8072971..8073125 | 17..171 | 100 | -> | Plus |
| arm_2L | 8073197..8073716 | 172..693 | 99 | | Plus |
BS08329.pep Sequence
Translation from 16 to 690
> BS08329.pep
MQFHFKVADAERDRDNVAATSNAAANPHAALQPQQPVALVEPKDAQHEIR
LQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIF
RTGKVICTGARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVDL
RFPIRLENLNHVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFTG
AKSRKDIMDCLEAISPILLSFRKT*
BS08329.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trf-PA | 224 | CG7562-PA | 1..224 | 1..224 | 1146 | 100 | Plus |
| Tbp-PA | 353 | CG9874-PA | 148..351 | 22..223 | 586 | 55.9 | Plus |
| Trf2-PJ | 632 | CG18009-PJ | 157..376 | 1..223 | 331 | 33.8 | Plus |
| Trf2-PH | 632 | CG18009-PH | 157..376 | 1..223 | 331 | 33.8 | Plus |
| Trf2-PI | 1714 | CG18009-PI | 1239..1458 | 1..223 | 331 | 33.8 | Plus |
