Clone BS08346 Report

Search the DGRC for BS08346

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:83
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG7691-RA
Protein status:BS08346.pep: full length peptide match
Sequenced Size:884

Clone Sequence Records

BS08346.3prime Sequence

760 bp (741 high quality bases) assembled on 2006-01-10

> BS08346.3prime
ATGGTCTAGAAAGCTTCTAGAACCTCTTATGCATCACGGACAGCAGATAC
TTGCGACAAGCGTCCAACGAGTGTCGATTCAAATAGGAAAACTGACTGAA
ATACTTGCCACACTGTCCACATTGATGCTGCCACTCGTGGTGGCCCATGG
TGCGCTGATGGGAGCGCAGATTGGACCTATCCGAAAAGGCTTTGCGGCAA
CTGCCATCAGGACACACAAAGGGCTTTTCACCAGTGTGCGTCCTTGTGTG
TGCAGTCAGCATCCAGGAATGATCGAACTTCTTGTCGCAATCAATGCACT
CGAATTGCCCGCCCACTCGCTTTAAACGTCTCTTTTCCGGCATTTTTCTT
TGCTGGATTGGTGGGATTTCCACAATATTTGATGGCACTGTCACATTAGC
CAAAATTGGTCCTTTCCGCTTGAGTTTCGTGCGAGTTTGCTTGGACTCAG
CCGTGACCGTAATGATGCCAACCTTGATGCCGTTTCTGGTTTTTGGTATC
GAATCAAAACTTTCACCTGGCATTTTCAGCTCCCAGATGGTATGACTGAG
CAGAGAGCTTTCCGTTATTGGTAGGACACTCATCAGTTGGATGCCTAGTC
GCTCCTCCATTTCTCTCCGGACCACAATGGGTATATCGTCGCCCTGTCGC
CAATCGCCGCTCGGTTCACTTTGACCAAAACAATAGGTGAACTTTACGTT
GGTTTTGGGCTCCCGGTTTGTGGCTACCCTGCTGTGGTGGTTGGTTTTTG
GCCTGNGCAT

BS08346.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7691-PA 852 CG7691-RA 109..852 760..17 3651 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7691-RA 1287 CG7691-RA 456..1199 760..17 3679 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18560444..18561029 760..175 2889 99.5 Minus
3R 32079331 3R 18561104..18561265 178..17 810 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:53:03 has no hits.

BS08346.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:56 Download gff for BS08346.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7691-PA 109..852 17..760 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:37:38 Download gff for BS08346.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7691-PA 109..852 17..760 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:01:54 Download gff for BS08346.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7691-RA 456..1203 10..760 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:55 Download gff for BS08346.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7691-RA 456..1203 10..760 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:55 Download gff for BS08346.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18560444..18561027 177..760 99 -> Minus
3R 18561106..18561269 10..176 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:01:54 Download gff for BS08346.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14386166..14386749 177..760 99 -> Minus
arm_3R 14386828..14386991 10..176 98   Minus

BS08346.5prime Sequence

727 bp (568 high quality bases) assembled on 2006-01-10

> BS08346.5prime
GAAGTTATCAGTCGACATGCCAAGAATCTTTCGCAGTTTCTTGTCCGATC
GCTATAATGGCAAGCAGGAACGATTCTACGACCGATATGAAGATTTTTGT
CAAGTCATTCCAAACTTACCGCCAATGCCCAGGCCAAAAACCAACCACCA
CAGCAGGGTAGCCACAAAACCGGAGCCCAAAACCAACGTAAAGTTCACCT
ATTGTTTTGGTCAAAGTGAACCGAGCGGCGATTGGCGACAGGGCGACGAT
ATACCCATTGTGGTCCGGAGAGAAATGGAGGAGCGACTAGGCATCCAACT
GATGAGTGTCCTACCAATAACGGAAAGCTCTCTGCTCAGTCATACCATCT
GGGAGCTGAAAATGCCAGGTGAAAGTTTTGATTCGATACCAAAAACCAGA
AACGGCATCAAGGTTGGCATCATTACGGTCACGGCTGAGTCCAAGCAAAC
TCGCACGAAACTCAAGCGGAAAGGACCAATTTTGGCTAATGTGACAGTGC
CATCAAATATTGTGGAAATCCCACCAATCCAGCAAAGAAAAATGCCGGAA
AAGAGACGTTTAAAGCGAGTGGGCGGGCAATTCGAGTGCATTGATTGCGA
CAAGAAGTTCGATCATTCCTGGATGCTGACTGCACACACAAGGACGCACA
CTGGTGAAAAGCCCTTTGTGTGTCCTGATGGCAGTTGCCGCAAAGCCTTT
TCGGATAGGTCCCATCTGCGCTCCCAT

BS08346.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7691-PA 852 CG7691-RA 1..711 17..727 3505 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7691-RA 1287 CG7691-RA 347..1058 16..727 3530 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18560410..18561029 91..710 3100 100 Plus
3R 32079331 3R 18560281..18560357 16..92 370 98.7 Plus
Blast to na_te.dros performed on 2015-02-10 03:10:03 has no hits.

BS08346.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:57 Download gff for BS08346.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7691-PA 1..711 17..727 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:37:39 Download gff for BS08346.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7691-PA 1..711 17..727 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:42:24 Download gff for BS08346.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7691-RA 341..1058 10..727 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:13:58 Download gff for BS08346.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7691-RA 341..1058 10..727 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:13:58 Download gff for BS08346.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18560275..18560357 10..92 95 -> Plus
3R 18560412..18561027 93..708 100 -> Plus
3R 18561106..18561124 709..727 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:42:24 Download gff for BS08346.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14385997..14386079 10..92 95 -> Plus
arm_3R 14386134..14386749 93..708 100 -> Plus
arm_3R 14386828..14386846 709..727 94   Plus

BS08346.complete Sequence

884 bp assembled on 2008-08-15

GenBank Submission: KX802198

> BS08346.complete
GAAGTTATCAGTCGACATGCCAAGAATCTTTCGCAGTTTCTTGTCCGATC
GCTATAATGGCAAGCAGGAACGATTCTACGACCGATATGAAGATTTTTGT
CAAGTCATTCCAAACTTACCGCCAATGCCCAGGCCAAAAACCAACCACCA
CAGCAGGGTAGCCACAAAACCGGAGCCCAAAACCAACGTAAAGTTCACCT
ATTGTTTTGGTCAAAGTGAACCGAGCGGCGATTGGCGACAGGGCGACGAT
ATACCCATTGTGGTCCGGAGAGAAATGGAGGAGCGACTAGGCATCCAACT
GATGAGTGTCCTACCAATAACGGAAAGCTCTCTGCTCAGTCATACCATCT
GGGAGCTGAAAATGCCAGGTGAAAGTTTTGATTCGATACCAAAAACCAGA
AACGGCATCAAGGTTGGCATCATTACGGTCACGGCTGAGTCCAAGCAAAC
TCGCACGAAACTCAAGCGGAAAGGACCAATTTTGGCTAATGTGACAGTGC
CATCAAATATTGTGGAAATCCCACCAATCCAGCAAAGAAAAATGCCGGAA
AAGAGACGTTTAAAGCGAGTGGGCGGGCAATTCGAGTGCATTGATTGCGA
CAAGAAGTTCGATCATTCCTGGATGCTGACTGCACACACAAGGACGCACA
CTGGTGAAAAGCCCTTTGTGTGTCCTGATGGCAGTTGCCGCAAAGCCTTT
TCGGATAGGTCCAATCTGCGCTCCCATCAGCGCACCATGGGCCACCACGA
GTGGCAGCATCAATGTGGACAGTGTGGCAAGTATTTCAGTCAGTTTTCCT
ATTTGAATCGACACTCGTTGGACGCTTGTCGCAAGTATCTGCTGTCCGTG
ATGCATAAGAGGTTCTAGAAGCTTTCTAGACCAT

BS08346.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7691-RA 852 CG7691-PA 1..852 17..868 4245 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7691-RA 1287 CG7691-RA 347..1199 16..868 4250 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18560410..18561029 91..710 3100 100 Plus
3R 32079331 3R 18561104..18561265 707..868 810 100 Plus
3R 32079331 3R 18560281..18560357 16..92 370 98.7 Plus
Blast to na_te.dros performed on 2014-11-27 13:54:16 has no hits.

BS08346.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:40 Download gff for BS08346.complete
Subject Subject Range Query Range Percent Splice Strand
CG7691-RA 341..1203 10..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:11 Download gff for BS08346.complete
Subject Subject Range Query Range Percent Splice Strand
CG7691-RA 348..1199 17..868 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:16 Download gff for BS08346.complete
Subject Subject Range Query Range Percent Splice Strand
CG7691-RA 348..1199 17..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:21 Download gff for BS08346.complete
Subject Subject Range Query Range Percent Splice Strand
CG7691-RA 348..1199 17..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:21 Download gff for BS08346.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18560282..18560357 17..92 98 -> Plus
3R 18560412..18561027 93..708 100 -> Plus
3R 18561106..18561265 709..868 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:11 Download gff for BS08346.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14386004..14386079 17..92 98 -> Plus
arm_3R 14386134..14386749 93..708 100 -> Plus
arm_3R 14386828..14386987 709..868 100   Plus

BS08346.pep Sequence

Translation from 16 to 867

> BS08346.pep
MPRIFRSFLSDRYNGKQERFYDRYEDFCQVIPNLPPMPRPKTNHHSRVAT
KPEPKTNVKFTYCFGQSEPSGDWRQGDDIPIVVRREMEERLGIQLMSVLP
ITESSLLSHTIWELKMPGESFDSIPKTRNGIKVGIITVTAESKQTRTKLK
RKGPILANVTVPSNIVEIPPIQQRKMPEKRRLKRVGGQFECIDCDKKFDH
SWMLTAHTRTHTGEKPFVCPDGSCRKAFSDRSNLRSHQRTMGHHEWQHQC
GQCGKYFSQFSYLNRHSLDACRKYLLSVMHKRF*

BS08346.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7691-PA 283 CG7691-PA 1..283 1..283 1542 100 Plus
Kah-PA 442 CG17181-PA 177..257 190..273 221 50 Plus
sna-PA 390 CG3956-PA 307..385 190..271 210 50 Plus
esg-PA 470 CG3758-PA 371..449 190..271 194 46.3 Plus
CG12605-PC 474 CG12605-PC 353..430 191..271 193 46.9 Plus