Clone Sequence Records
BS08346.3prime Sequence
760 bp (741 high quality bases) assembled on 2006-01-10
> BS08346.3prime
ATGGTCTAGAAAGCTTCTAGAACCTCTTATGCATCACGGACAGCAGATAC
TTGCGACAAGCGTCCAACGAGTGTCGATTCAAATAGGAAAACTGACTGAA
ATACTTGCCACACTGTCCACATTGATGCTGCCACTCGTGGTGGCCCATGG
TGCGCTGATGGGAGCGCAGATTGGACCTATCCGAAAAGGCTTTGCGGCAA
CTGCCATCAGGACACACAAAGGGCTTTTCACCAGTGTGCGTCCTTGTGTG
TGCAGTCAGCATCCAGGAATGATCGAACTTCTTGTCGCAATCAATGCACT
CGAATTGCCCGCCCACTCGCTTTAAACGTCTCTTTTCCGGCATTTTTCTT
TGCTGGATTGGTGGGATTTCCACAATATTTGATGGCACTGTCACATTAGC
CAAAATTGGTCCTTTCCGCTTGAGTTTCGTGCGAGTTTGCTTGGACTCAG
CCGTGACCGTAATGATGCCAACCTTGATGCCGTTTCTGGTTTTTGGTATC
GAATCAAAACTTTCACCTGGCATTTTCAGCTCCCAGATGGTATGACTGAG
CAGAGAGCTTTCCGTTATTGGTAGGACACTCATCAGTTGGATGCCTAGTC
GCTCCTCCATTTCTCTCCGGACCACAATGGGTATATCGTCGCCCTGTCGC
CAATCGCCGCTCGGTTCACTTTGACCAAAACAATAGGTGAACTTTACGTT
GGTTTTGGGCTCCCGGTTTGTGGCTACCCTGCTGTGGTGGTTGGTTTTTG
GCCTGNGCAT
BS08346.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7691-PA | 852 | CG7691-RA | 109..852 | 760..17 | 3651 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7691-RA | 1287 | CG7691-RA | 456..1199 | 760..17 | 3679 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18560444..18561029 | 760..175 | 2889 | 99.5 | Minus |
3R | 32079331 | 3R | 18561104..18561265 | 178..17 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:53:03 has no hits.
BS08346.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:56 Download gff for
BS08346.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7691-PA | 109..852 | 17..760 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:37:38 Download gff for
BS08346.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7691-PA | 109..852 | 17..760 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:01:54 Download gff for
BS08346.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7691-RA | 456..1203 | 10..760 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:55 Download gff for
BS08346.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7691-RA | 456..1203 | 10..760 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:55 Download gff for
BS08346.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18560444..18561027 | 177..760 | 99 | -> | Minus |
3R | 18561106..18561269 | 10..176 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:01:54 Download gff for
BS08346.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14386166..14386749 | 177..760 | 99 | -> | Minus |
arm_3R | 14386828..14386991 | 10..176 | 98 | | Minus |
BS08346.5prime Sequence
727 bp (568 high quality bases) assembled on 2006-01-10
> BS08346.5prime
GAAGTTATCAGTCGACATGCCAAGAATCTTTCGCAGTTTCTTGTCCGATC
GCTATAATGGCAAGCAGGAACGATTCTACGACCGATATGAAGATTTTTGT
CAAGTCATTCCAAACTTACCGCCAATGCCCAGGCCAAAAACCAACCACCA
CAGCAGGGTAGCCACAAAACCGGAGCCCAAAACCAACGTAAAGTTCACCT
ATTGTTTTGGTCAAAGTGAACCGAGCGGCGATTGGCGACAGGGCGACGAT
ATACCCATTGTGGTCCGGAGAGAAATGGAGGAGCGACTAGGCATCCAACT
GATGAGTGTCCTACCAATAACGGAAAGCTCTCTGCTCAGTCATACCATCT
GGGAGCTGAAAATGCCAGGTGAAAGTTTTGATTCGATACCAAAAACCAGA
AACGGCATCAAGGTTGGCATCATTACGGTCACGGCTGAGTCCAAGCAAAC
TCGCACGAAACTCAAGCGGAAAGGACCAATTTTGGCTAATGTGACAGTGC
CATCAAATATTGTGGAAATCCCACCAATCCAGCAAAGAAAAATGCCGGAA
AAGAGACGTTTAAAGCGAGTGGGCGGGCAATTCGAGTGCATTGATTGCGA
CAAGAAGTTCGATCATTCCTGGATGCTGACTGCACACACAAGGACGCACA
CTGGTGAAAAGCCCTTTGTGTGTCCTGATGGCAGTTGCCGCAAAGCCTTT
TCGGATAGGTCCCATCTGCGCTCCCAT
BS08346.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7691-PA | 852 | CG7691-RA | 1..711 | 17..727 | 3505 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7691-RA | 1287 | CG7691-RA | 347..1058 | 16..727 | 3530 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:09:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18560410..18561029 | 91..710 | 3100 | 100 | Plus |
3R | 32079331 | 3R | 18560281..18560357 | 16..92 | 370 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:10:03 has no hits.
BS08346.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:38:57 Download gff for
BS08346.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7691-PA | 1..711 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:37:39 Download gff for
BS08346.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7691-PA | 1..711 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:42:24 Download gff for
BS08346.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7691-RA | 341..1058 | 10..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:13:58 Download gff for
BS08346.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7691-RA | 341..1058 | 10..727 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:13:58 Download gff for
BS08346.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18560275..18560357 | 10..92 | 95 | -> | Plus |
3R | 18560412..18561027 | 93..708 | 100 | -> | Plus |
3R | 18561106..18561124 | 709..727 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:42:24 Download gff for
BS08346.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14385997..14386079 | 10..92 | 95 | -> | Plus |
arm_3R | 14386134..14386749 | 93..708 | 100 | -> | Plus |
arm_3R | 14386828..14386846 | 709..727 | 94 | | Plus |
BS08346.complete Sequence
884 bp assembled on 2008-08-15
GenBank Submission: KX802198
> BS08346.complete
GAAGTTATCAGTCGACATGCCAAGAATCTTTCGCAGTTTCTTGTCCGATC
GCTATAATGGCAAGCAGGAACGATTCTACGACCGATATGAAGATTTTTGT
CAAGTCATTCCAAACTTACCGCCAATGCCCAGGCCAAAAACCAACCACCA
CAGCAGGGTAGCCACAAAACCGGAGCCCAAAACCAACGTAAAGTTCACCT
ATTGTTTTGGTCAAAGTGAACCGAGCGGCGATTGGCGACAGGGCGACGAT
ATACCCATTGTGGTCCGGAGAGAAATGGAGGAGCGACTAGGCATCCAACT
GATGAGTGTCCTACCAATAACGGAAAGCTCTCTGCTCAGTCATACCATCT
GGGAGCTGAAAATGCCAGGTGAAAGTTTTGATTCGATACCAAAAACCAGA
AACGGCATCAAGGTTGGCATCATTACGGTCACGGCTGAGTCCAAGCAAAC
TCGCACGAAACTCAAGCGGAAAGGACCAATTTTGGCTAATGTGACAGTGC
CATCAAATATTGTGGAAATCCCACCAATCCAGCAAAGAAAAATGCCGGAA
AAGAGACGTTTAAAGCGAGTGGGCGGGCAATTCGAGTGCATTGATTGCGA
CAAGAAGTTCGATCATTCCTGGATGCTGACTGCACACACAAGGACGCACA
CTGGTGAAAAGCCCTTTGTGTGTCCTGATGGCAGTTGCCGCAAAGCCTTT
TCGGATAGGTCCAATCTGCGCTCCCATCAGCGCACCATGGGCCACCACGA
GTGGCAGCATCAATGTGGACAGTGTGGCAAGTATTTCAGTCAGTTTTCCT
ATTTGAATCGACACTCGTTGGACGCTTGTCGCAAGTATCTGCTGTCCGTG
ATGCATAAGAGGTTCTAGAAGCTTTCTAGACCAT
BS08346.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7691-RA | 852 | CG7691-PA | 1..852 | 17..868 | 4245 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7691-RA | 1287 | CG7691-RA | 347..1199 | 16..868 | 4250 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18560410..18561029 | 91..710 | 3100 | 100 | Plus |
3R | 32079331 | 3R | 18561104..18561265 | 707..868 | 810 | 100 | Plus |
3R | 32079331 | 3R | 18560281..18560357 | 16..92 | 370 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:54:16 has no hits.
BS08346.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:40 Download gff for
BS08346.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7691-RA | 341..1203 | 10..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:11 Download gff for
BS08346.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7691-RA | 348..1199 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:16 Download gff for
BS08346.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7691-RA | 348..1199 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:21 Download gff for
BS08346.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7691-RA | 348..1199 | 17..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:21 Download gff for
BS08346.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18560282..18560357 | 17..92 | 98 | -> | Plus |
3R | 18560412..18561027 | 93..708 | 100 | -> | Plus |
3R | 18561106..18561265 | 709..868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:11 Download gff for
BS08346.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14386004..14386079 | 17..92 | 98 | -> | Plus |
arm_3R | 14386134..14386749 | 93..708 | 100 | -> | Plus |
arm_3R | 14386828..14386987 | 709..868 | 100 | | Plus |
BS08346.pep Sequence
Translation from 16 to 867
> BS08346.pep
MPRIFRSFLSDRYNGKQERFYDRYEDFCQVIPNLPPMPRPKTNHHSRVAT
KPEPKTNVKFTYCFGQSEPSGDWRQGDDIPIVVRREMEERLGIQLMSVLP
ITESSLLSHTIWELKMPGESFDSIPKTRNGIKVGIITVTAESKQTRTKLK
RKGPILANVTVPSNIVEIPPIQQRKMPEKRRLKRVGGQFECIDCDKKFDH
SWMLTAHTRTHTGEKPFVCPDGSCRKAFSDRSNLRSHQRTMGHHEWQHQC
GQCGKYFSQFSYLNRHSLDACRKYLLSVMHKRF*
BS08346.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7691-PA | 283 | CG7691-PA | 1..283 | 1..283 | 1542 | 100 | Plus |
Kah-PA | 442 | CG17181-PA | 177..257 | 190..273 | 221 | 50 | Plus |
sna-PA | 390 | CG3956-PA | 307..385 | 190..271 | 210 | 50 | Plus |
esg-PA | 470 | CG3758-PA | 371..449 | 190..271 | 194 | 46.3 | Plus |
CG12605-PC | 474 | CG12605-PC | 353..430 | 191..271 | 193 | 46.9 | Plus |