Clone BS08364 Report

Search the DGRC for BS08364

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:83
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptLmpt-RB
Protein status:BS08364.pep: full length peptide match
Sequenced Size:1712

Clone Sequence Records

BS08364.3prime Sequence

923 bp (791 high quality bases) assembled on 2006-01-10

> BS08364.3prime
ATGGTCTAGAAAGCTTTTACATCAGCTTCTGCTTGGCACAATCGGGGCAC
AGGATATCGGGTCCGTCGGTGATGAAGCCACGACCAACCAGACTAGCCTT
GCAGCTGGCACACACAAAGCAGTCGTGATGCCAGTGGCGATCCTCAAACG
ATATGAAGCGTGTGCCGCCAATGCCTGTTATGGGCTTCACACAGGCCGTG
CACCTTTTGGCAAAGAGCTCGCCAAAGCACTCCGCACAATAGGGCTTCTC
GTCGCGGCTGGTGAATCGCTGGCCAGCTAGCGTGATGTTGCAGTGGGTGC
AGGTGAAGCACTCGCGATGCCACGGCTCGTTCTTGTAGGTAACACCTCCC
GAGGTGATGACCTTATTGCACTTGATGCAGCGCGTGGCAAACTTCTCCTC
GTAGCAGCCGGCGCAATAGATCTCCTGCTCCCGCGGGATGAAGGACTTGG
TCCCAATGGCCGTCTTGCAGACGCAGCAGCAGAAGCAATTCTCGTGCCAC
TGCCTGGTTTTATACTCCATTTTCTTGGTGCCTGCGCGGAAAACTTCGCC
GCAGCCATCGCAGCGGGACGCAAACTGGGCATCGTAGCAGTTTCCACAGT
AGATCTTATCCGCCTTGGCTCCAAACTGCTTGTCCACCAGCGACAGATGG
CACTTGAAGCACAGGAAACAGGCCTCGTGCCAGTGCTTGTCTTTGTAGGA
CAGATCCTTGGAGTCGATGCCAATGATCTTGTTGCACTCCTCGCACGTAT
TGGCGAACACATTCTCGTAGCACTTGATGCAGTACGGATGATCGTCCCGG
ATGACGTAACGCTGTCCGGTGAGGCTCTCGTCGCATTGCCAGCAGCAGAA
GTGTCCGGAGTGCCAGTCCTTGTTCATGGCTTTTGTGTACTCGCCACTGA
AAATTAACTCATCACAGCCCGCG

BS08364.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG32171-PG 1680 Lmpt-RG 778..1680 919..17 4490 99.8 Minus
CG32171-PH 1677 Lmpt-RH 775..1677 919..17 4490 99.8 Minus
CG32171-PB 1680 Lmpt-RB 778..1680 919..17 4490 99.8 Minus
CG32171-PD 1677 Lmpt-RD 775..1677 919..17 4490 99.8 Minus
CG32171-PC 1020 Lmpt-RC 140..1020 897..17 4380 99.8 Minus
CG32171-PF 861 Lmpt-RF 5..861 873..17 4285 100 Minus
CG32171-PA 738 Lmpt-RA 220..738 535..17 2595 100 Minus
CG32171-PE 738 Lmpt-RE 220..738 535..17 2595 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-RM 2905 CG42679-RM 1106..2012 923..17 4505 99.8 Minus
Lmpt-RN 2690 CG42679-RN 891..1797 923..17 4505 99.8 Minus
Lmpt-RD 2860 CG32171-RD 1061..1967 923..17 4505 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16912127..16912330 909..706 1005 99.5 Minus
3L 28110227 3L 16921178..16921367 363..174 950 100 Minus
3L 28110227 3L 16913222..16913399 708..531 890 100 Minus
3L 28110227 3L 16920879..16921053 534..360 875 100 Minus
3L 28110227 3L 16921430..16921594 181..17 810 99.4 Minus
Blast to na_te.dros performed on 2015-02-01 07:09:36 has no hits.

BS08364.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:39:23 Download gff for BS08364.3prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-PB 774..1680 17..923 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:11 Download gff for BS08364.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32171-PH 771..1677 17..923 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:11:25 Download gff for BS08364.3prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RD 1061..1974 8..923 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:41:28 Download gff for BS08364.3prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RD 1061..1974 8..923 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:41:28 Download gff for BS08364.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16921437..16921601 8..174 97   Minus
3L 16912118..16912329 707..916 98 -> Minus
3L 16913224..16913398 532..706 100 -> Minus
3L 16920882..16921051 362..531 100 -> Minus
3L 16921180..16921366 175..361 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:11:25 Download gff for BS08364.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16914537..16914701 8..174 97   Minus
arm_3L 16905218..16905429 707..916 98 -> Minus
arm_3L 16906324..16906498 532..706 100 -> Minus
arm_3L 16913982..16914151 362..531 100 -> Minus
arm_3L 16914280..16914466 175..361 100 -> Minus

BS08364.5prime Sequence

889 bp (738 high quality bases) assembled on 2006-01-10

> BS08364.5prime
GAAGTTATCAGTCGACATGACACCATCGCCGACCAAGGAACTCATGAGTG
CCACACCGACGATTTCGCGTCGTCCGCGCGAGGAGTTCGCCGAGAAGGGT
GCCATTATAAGAGAGGTGGAAGATGGAGTACGGTGTGAGCAATGTAAATC
AGATTGCCCAGGCTTTGCAGCGCACGATTGGAGGAAAACCTGCCAGTCCT
GCAAATGTCCTCGCGAGGCGCATGCCATCTATCAGCAACAGACTACCAAC
GTGCATGAGCGACTCGGCTTCAAATTGGTCTCTCCGGCGGATTCGGGAGT
GGAGGCGCGGGATCTGGGCTTCACGTGGGTTCCGCCCGGAGTGCGTGCCT
CCTCGCGCATCAACCGCTACTTCGAGCAGCTGCCCGACGAAATGGTACCC
CGGCTGGGCAGCGAAGGCGCCTGCAGCCGGGAGCGACAGATCTCTTACCA
GCTGCCCAAACAGGACCTCTCGCTGGAGCACTGCAAGCACCTGGAGGTGC
AGCACGAGGCTTCCTTCGAGGACTTTGTGACGGCGCGAAACGAAATCGCA
CTGGACATAGCCTACATCAAGGATGCCCCCTACGATGAGCATTGTGCGCA
CTGTGATAACGAGATAGCCGCCGGCGAGCTAGTTGTGGCGGCGCCCAAGT
TTGTGGAGAGCGTGATGTGGCACCCAAAGTGCTTCACCTGCAGCACCTGC
AACTCGCTACTCGTGGACCTCACCTACTGCGTCCACGACGACNAGGTCTA
CTGCGAGCGCCACTATGCGGAAATGCTGAAGCCCCGCTGCGCTGGCTGTG
ATGAGTTAATTTTCAGTGGCGAGTACACAAAAGCCATGGACAAGGACTGG
CACTCCGGACACTTCTGCTGCTGGCATGCGACGAGAGCC

BS08364.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG32171-PG 1680 Lmpt-RG 1..860 17..876 4281 99.8 Plus
CG32171-PB 1680 Lmpt-RB 1..860 17..876 4281 99.8 Plus
CG32171-PH 1677 Lmpt-RH 162..857 181..876 3461 99.8 Plus
CG32171-PD 1677 Lmpt-RD 162..857 181..876 3461 99.8 Plus
CG32171-PC 1020 Lmpt-RC 140..200 816..876 305 100 Plus
CG32171-PF 861 Lmpt-RF 1..41 836..876 205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-RM 2905 CG42679-RM 333..1206 17..889 4334 99.8 Plus
Lmpt-RB 2916 CG32171-RB 344..1217 17..889 4334 99.8 Plus
Lmpt-RG 3028 CG32171-RG 456..1329 17..889 4334 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16896802..16897180 182..560 1895 100 Plus
3L 28110227 3L 16897380..16897628 557..805 1234 99.6 Plus
3L 28110227 3L 16883917..16884005 96..184 445 100 Plus
3L 28110227 3L 16866866..16866947 17..98 410 100 Plus
3L 28110227 3L 16912127..16912213 804..889 385 98.9 Plus
Blast to na_te.dros performed on 2015-02-12 05:24:37 has no hits.

BS08364.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:39:24 Download gff for BS08364.5prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-PG 1..874 17..889 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:12 Download gff for BS08364.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32171-PB 1..874 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:56:23 Download gff for BS08364.5prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RG 452..1329 9..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:21:32 Download gff for BS08364.5prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RG 452..1329 9..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:21:32 Download gff for BS08364.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16866862..16866946 9..97 95 -> Plus
3L 16883919..16884004 98..183 100 -> Plus
3L 16896804..16897180 184..560 100 -> Plus
3L 16897384..16897628 561..805 99 -> Plus
3L 16912129..16912213 806..889 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:56:23 Download gff for BS08364.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16859962..16860046 9..97 95 -> Plus
arm_3L 16877019..16877104 98..183 100 -> Plus
arm_3L 16889904..16890280 184..560 100 -> Plus
arm_3L 16890484..16890728 561..805 99 -> Plus
arm_3L 16905229..16905313 806..889 98   Plus

BS08364.complete Sequence

1712 bp assembled on 2012-04-25

GenBank Submission: KX802376

> BS08364.complete
GAAGTTATCAGTCGACATGACACCATCGCCGACCAAGGAACTCATGAGTG
CCACACCGACGATTTCGCGTCGTCCGCGCGAGGAGTTCGCCGAGAAGGGT
GCCATTATAAGAGAGGTGGAAGATGGAGTACGGTGTGAGCAATGTAAATC
AGATTGCCCAGGCTTTGCAGCGCACGATTGGAGGAAAACCTGCCAGTCCT
GCAAATGTCCTCGCGAGGCGCATGCCATCTATCAGCAACAGACTACCAAC
GTGCATGAGCGACTCGGCTTCAAATTGGTCTCTCCGGCGGATTCGGGAGT
GGAGGCGCGGGATCTGGGCTTCACGTGGGTTCCGCCCGGAGTGCGTGCCT
CCTCGCGCATCAACCGCTACTTCGAGCAGCTGCCCGACGAAATGGTACCC
CGGCTGGGCAGCGAAGGCGCCTGCAGCCGGGAGCGACAGATCTCTTACCA
GCTGCCCAAACAGGACCTCTCGCTGGAGCACTGCAAGCACCTGGAGGTGC
AGCACGAGGCTTCCTTCGAGGACTTTGTGACGGCGCGAAACGAAATCGCA
CTGGACATAGCCTACATCAAGGATGCCCCCTACGATGAGCATTGTGCGCA
CTGTGATAACGAGATAGCCGCCGGCGAGCTAGTTGTGGCGGCGCCCAAGT
TTGTGGAGAGCGTGATGTGGCACCCAAAGTGCTTCACCTGCAGCACCTGC
AACTCGCTACTCGTGGACCTCACCTACTGCGTCCACGACGACAAGGTCTA
CTGCGAGCGCCACTATGCGGAAATGCTGAAGCCCCGCTGCGCTGGCTGTG
ATGAGTTAATTTTCAGTGGCGAGTACACAAAAGCCATGGACAAGGACTGG
CACTCCGGACACTTCTGCTGCTGGCAATGCGACGAGAGCCTCACCGGACA
GCGTTACGTCATCCGGGACGATCATCCGTACTGCATCAAGTGCTACGAGA
ATGTGTTCGCCAATACGTGCGAGGAGTGCAACAAGATCATTGGCATCGAC
TCCAAGGATCTGTCCTACAAAGACAAGCACTGGCACGAGGCCTGTTTCCT
GTGCTTCAAGTGCCATCTGTCGCTGGTGGACAAGCAGTTTGGAGCCAAGG
CGGATAAGATCTACTGTGGAAACTGCTACGATGCCCAGTTTGCGTCCCGC
TGCGATGGCTGCGGCGAAGTTTTCCGCGCAGGCACCAAGAAAATGGAGTA
TAAAACCAGGCAGTGGCACGAGAATTGCTTCTGCTGCTGCGTCTGCAAGA
CGGCCATTGGGACCAAGTCCTTCATCCCGCGGGAGCAGGAGATCTATTGC
GCCGGCTGCTACGAGGAGAAGTTTGCCACGCGCTGCATCAAGTGCAATAA
GGTCATCACCTCGGGAGGTGTTACCTACAAGAACGAGCCGTGGCATCGCG
AGTGCTTCACCTGCACCCACTGCAACATCACGCTAGCTGGCCAGCGATTC
ACCAGCCGCGACGAGAAGCCCTATTGTGCGGAGTGCTTTGGCGAGCTCTT
TGCCAAAAGGTGCACGGCCTGTGTGAAGCCCATAACAGGCATTGGCGGCA
CACGCTTCATATCGTTTGAGGATCGCCACTGGCATCACGACTGCTTTGTG
TGTGCCAGCTGCAAGGCTAGTCTGGTTGGTCGTGGCTTCATCACCGACGG
ACCCGATATCCTGTGCCCCGATTGTGCCAAGCAGAAGCTGATGTAAAAGC
TTTCTAGACCAT

BS08364.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-RM 1680 CG42679-PM 1..1680 17..1696 8400 100 Plus
Lmpt-RB 1680 CG42679-PB 1..1680 17..1696 8400 100 Plus
Lmpt-RG 1680 CG42679-PG 1..1680 17..1696 8400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-RM 2905 CG42679-RM 333..2012 17..1696 8400 100 Plus
Lmpt-RB 2916 CG32171-RB 344..2023 17..1696 8400 100 Plus
Lmpt-RG 3028 CG32171-RG 456..2135 17..1696 8400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16896802..16897180 182..560 1895 100 Plus
3L 28110227 3L 16897380..16897628 557..805 1245 100 Plus
3L 28110227 3L 16912127..16912330 804..1007 1020 100 Plus
3L 28110227 3L 16921178..16921367 1350..1539 950 100 Plus
3L 28110227 3L 16913222..16913399 1005..1182 890 100 Plus
3L 28110227 3L 16920879..16921053 1179..1353 875 100 Plus
3L 28110227 3L 16921430..16921594 1532..1696 810 99.4 Plus
3L 28110227 3L 16883917..16884005 96..184 445 100 Plus
3L 28110227 3L 16866866..16866947 17..98 410 100 Plus
Blast to na_te.dros performed on 2014-11-28 12:17:03 has no hits.

BS08364.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:05 Download gff for BS08364.complete
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RB 339..2016 17..1694 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:46 Download gff for BS08364.complete
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RB 339..2016 17..1694 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:59 Download gff for BS08364.complete
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RG 456..2133 17..1694 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:01:05 Download gff for BS08364.complete
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RG 456..2133 17..1694 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:01:05 Download gff for BS08364.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16866866..16866946 17..97 100 -> Plus
3L 16883919..16884004 98..183 100 -> Plus
3L 16896804..16897180 184..560 100 -> Plus
3L 16897384..16897628 561..805 100 -> Plus
3L 16912129..16912329 806..1006 100 -> Plus
3L 16913224..16913398 1007..1181 100 -> Plus
3L 16920882..16921051 1182..1351 100 -> Plus
3L 16921180..16921366 1352..1538 100 -> Plus
3L 16921437..16921592 1539..1694 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:59 Download gff for BS08364.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16905229..16905429 806..1006 100 -> Plus
arm_3L 16906324..16906498 1007..1181 100 -> Plus
arm_3L 16913982..16914151 1182..1351 100 -> Plus
arm_3L 16914280..16914466 1352..1538 100 -> Plus
arm_3L 16914537..16914692 1539..1694 100   Plus
arm_3L 16859966..16860046 17..97 100 -> Plus
arm_3L 16877019..16877104 98..183 100 -> Plus
arm_3L 16889904..16890280 184..560 100 -> Plus
arm_3L 16890484..16890728 561..805 100 -> Plus

BS08364.pep Sequence

Translation from 16 to 1695

> BS08364.pep
MTPSPTKELMSATPTISRRPREEFAEKGAIIREVEDGVRCEQCKSDCPGF
AAHDWRKTCQSCKCPREAHAIYQQQTTNVHERLGFKLVSPADSGVEARDL
GFTWVPPGVRASSRINRYFEQLPDEMVPRLGSEGACSRERQISYQLPKQD
LSLEHCKHLEVQHEASFEDFVTARNEIALDIAYIKDAPYDEHCAHCDNEI
AAGELVVAAPKFVESVMWHPKCFTCSTCNSLLVDLTYCVHDDKVYCERHY
AEMLKPRCAGCDELIFSGEYTKAMDKDWHSGHFCCWQCDESLTGQRYVIR
DDHPYCIKCYENVFANTCEECNKIIGIDSKDLSYKDKHWHEACFLCFKCH
LSLVDKQFGAKADKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTRQW
HENCFCCCVCKTAIGTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSG
GVTYKNEPWHRECFTCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCT
ACVKPITGIGGTRFISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILC
PDCAKQKLM*

BS08364.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-PM 559 CG42679-PM 1..559 1..559 3166 100 Plus
Lmpt-PB 559 CG32171-PB 1..559 1..559 3166 100 Plus
Lmpt-PG 559 CG32171-PG 1..559 1..559 3166 100 Plus
Lmpt-PN 529 CG42679-PN 26..529 56..559 2867 100 Plus
Lmpt-PD 558 CG32171-PD 55..558 56..559 2867 100 Plus