Clone BS08365 Report

Search the DGRC for BS08365

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:83
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptDad-RA
Protein status:BS08365.pep: full length peptide match
Sequenced Size:1739

Clone Sequence Records

BS08365.3prime Sequence

937 bp (851 high quality bases) assembled on 2006-01-10

> BS08365.3prime
ATGGTCTAGAAAGCTTTCACCGCAGATGACTAAAGTGAACCTCCAGCCAG
CAGGGGCAGCCCATGATATCCTGTCTTTTGTAGTCGCGTCCCCAGCCCTT
GCCAAAGCTGATCTTAATGCTGAAGTAGTCGACGGGTCCCATGGGATGAT
GTCCGTGATCTCTCATGCTCAGAAGTTCAGCCCTATTGGTTTCAAAGGCC
TTCAGACAATAGCCCGGCATCACTTTGCACACTCGGTCCAGATTTTCGGA
CAGGGTGGGTGAATCGACAAAAATGGTTGTATTCCCACGATTGTAGATCC
AAACATCGCCGTTCTCCAGACTCAATGTGACCCCCAATCCGACCGTATGA
CGCGCTTTTGGCACCACCGAGTGGATCTGATTGCCTGCTGGTGTGAGGTC
ACGTAGGCACATGCTGTCCACCTCACTGGCCACAATCCCATCCGTGTAGA
TATTGACTGCATTCGTTTTGGCGTGAAAGAACTCCCCGACGCGGTGGGCC
ATCTCCCAGTAGGCGATTTGGCACCACACCTGACTGTTGATGTTATGATC
TTTTCCATCAGTGGTAACCGACTCGTAGAGAGCCGGCTTGTAGATGTTCG
AAATGCTGGTGCTTTCGGCACTCCACGTGCTGAGCGCTGCCGACTTTGCA
TCGTTCTGCGAGTCTTCTTCGAAATCTGCATCTTTCAGTCTCAGCATTTT
TGAGCGTTGGTACGGCGGTGTTGGGGATTCTGTTTCGGGCTGGTGCAGGA
TGCGAAACCAATGCAGCGGATTGCAGCACATGTAGATGCAGTCGCGGGCG
GCGGGACAAGTGGGCAGTCGCTTCAGTTCCTTGGCGTTCCACAATTCCCG
CCAGAAAAACAGGCGACTGGCGGTCACGTGCGGCTCCCAAACCGTTTGCG
TTTTGCACGGTATCANGATGCACTGCAGGTAGGTGGG

BS08365.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5201-PA 1707 Dad-RA 787..1707 937..17 4586 99.8 Minus
CG5201-PB 1707 Dad-RB 787..1707 937..17 4586 99.8 Minus
CG5201-PC 1707 Dad-RC 787..1707 937..17 4586 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dad-RC 3751 CG5201-RC 1558..2478 937..17 4594 99.9 Minus
Dad-RB 3550 CG5201-RB 1357..2277 937..17 4594 99.9 Minus
Dad-RA 3767 CG5201-RA 1574..2494 937..17 4594 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17068469..17068687 551..333 1095 100 Minus
3R 32079331 3R 17058497..17058704 937..730 1029 99.5 Minus
3R 32079331 3R 17068968..17069135 184..17 840 100 Minus
3R 32079331 3R 17068749..17068901 334..182 765 100 Minus
3R 32079331 3R 17064831..17064961 680..550 655 100 Minus
3R 32079331 3R 17064714..17064769 731..676 280 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:53:40 has no hits.

BS08365.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:39:25 Download gff for BS08365.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5201-PB 787..1707 17..937 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:13 Download gff for BS08365.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5201-PC 787..1707 17..937 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:31:03 Download gff for BS08365.3prime
Subject Subject Range Query Range Percent Splice Strand
Dad-RA 1574..2502 8..937 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:40:43 Download gff for BS08365.3prime
Subject Subject Range Query Range Percent Splice Strand
Dad-RA 1574..2502 8..937 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:40:43 Download gff for BS08365.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17058497..17058704 730..937 99 -> Minus
3R 17064716..17064769 676..729 100 -> Minus
3R 17064836..17064961 550..675 100 -> Minus
3R 17068471..17068686 334..549 100 -> Minus
3R 17068750..17068900 183..333 100 -> Minus
3R 17068970..17069143 8..182 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:31:03 Download gff for BS08365.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12884219..12884426 730..937 99 -> Minus
arm_3R 12890438..12890491 676..729 100 -> Minus
arm_3R 12890558..12890683 550..675 100 -> Minus
arm_3R 12894193..12894408 334..549 100 -> Minus
arm_3R 12894472..12894622 183..333 100 -> Minus
arm_3R 12894692..12894865 8..182 97   Minus

BS08365.5prime Sequence

525 bp (473 high quality bases) assembled on 2006-01-10

> BS08365.5prime
GAAGTTATCAGTCGACATGATATTCCCAAGAGAAAAGAAGGTGTTATGGC
GTTATGCGTCCAGCAACAATCCGAGCAATGGGGTGTCAGCAGCACCGCCC
GCTCAGCCACCACGGCCGCCTCCCCCTCCACATCGACCCCGCCCTCATCA
GTGTACTCCAAGCTTTGGTTATTCCTGCAACGAAGAGGACTCCTTGGCAA
TGCGACAGACGCCGCTGCCGCCTTACAGTTCGATAGCCTGCGGGATGGAC
TGCTCCAGCTCAAACTCCAGCTCCTGTGGCCAGAGTTTGAGTCTGAGTCA
GGGGCAAGGCCACAACAACAACAACAGCCATCCGTACCGCCGTCTGCCAA
ATCACATGGATGTGTTGCCGCCGCCTCCGTCAGCGTGCGACCGCTGCTGT
ACCGCTCCTGGTTACAGCTGCGCAAGCTCCTGCGACGATATGTTGATCGA
CGGAAGCGATCTGGATCAGGATCGGAGTCCGGATCAGGAACAGGTTCAGC
CGGTGGACCGCCGGATGATAAGTGC

BS08365.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5201-PA 1707 Dad-RA 1..509 17..525 2520 99.8 Plus
CG5201-PB 1707 Dad-RB 1..509 17..525 2520 99.8 Plus
CG5201-PC 1707 Dad-RC 1..509 17..525 2520 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dad-RC 3751 CG5201-RC 771..1280 16..525 2535 99.8 Plus
Dad-RB 3550 CG5201-RB 570..1079 16..525 2535 99.8 Plus
Dad-RA 3767 CG5201-RA 787..1296 16..525 2535 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17057710..17058219 16..525 2535 99.8 Plus
Blast to na_te.dros performed on 2015-02-11 10:50:53 has no hits.

BS08365.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:39:26 Download gff for BS08365.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5201-PB 1..509 17..525 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:15 Download gff for BS08365.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5201-PC 1..509 17..525 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:37 Download gff for BS08365.5prime
Subject Subject Range Query Range Percent Splice Strand
Dad-RA 781..1296 8..525 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:39 Download gff for BS08365.5prime
Subject Subject Range Query Range Percent Splice Strand
Dad-RA 781..1296 8..525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:39 Download gff for BS08365.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17057704..17058219 8..525 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:37 Download gff for BS08365.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12883426..12883941 8..525 99   Plus

BS08365.complete Sequence

1739 bp assembled on 2010-05-13

GenBank Submission: KX803527

> BS08365.complete
GAAGTTATCAGTCGACATGATATTCCCAAGAGAAAAGAAGGTGTTATGGC
GTTATGCGTCCAGCAACAATCCGAGCAATGGGGTGTCAGCAGCACCGCCC
GCTCAGCCACCACGGCCGCCTCCCCCTCCACATCGACCCCGCCCTCATCA
GTGTACTCCAAGCTTTGGTTATTCCTGCAACGAAGAGGACTCCTTGGCAA
TGCGACAGACGCCGCTGCCGCCTTACAGTTCGATAGCCTGCGGGATGGAC
TGCTCCAGCTCAAACTCCAGCTCCTGTGGCCAGAGTTTGAGTCTGAGTCA
GGGGCAAGGCCACAACAACAACAACAGCCATCCGTACCGCCGTCTGCCAA
ATCACATGGATGTGTTGCCGCCGCCTCCGTCAGCGTGCGACCGCTGCTGT
ACCGCTCCTGGTTACAGCTGCGCAAGCTCCTGCGACGATATGTTGATCGA
CGGAAGCGATCTGGATCAGGATCGGAGTCCGGATCAGGGACAGGTTCAGC
CGGTGGACCGCCGGATGATAAGTGCCACCACCTTTACGACCATGTTTCGG
AAATGCTGCGGCGGCGCAACGGAGTCCACCAGCGGATCCACACTTACGAT
TCCAGTCAGCACGTCCAGAGCCACCGCTCATCCTCCCCAAACGCAAGCCC
AGAATGGCAAACGATTTCGCGAGGATTTCGAAGCGCTAATGAAGCAACTC
AAGCGCAAGCAGAGAAACGAACTTCTGCTTGCAGTCAAGAGTCGCCTAGA
TCCGCCGACCAAGACGCAGCGCGATGTCGTGGAACCCACCACCACCACCG
CACCCACCTACCTGCAGTGCATCCTGATACCGTGCAAAACGCAAACGGTT
TGGGAGCCGCACGTGACCGCCAGTCGCCTGTTTTTCTGGCGGGAATTGTG
GAACGCCAAGGAACTGAAGCGACTGCCCACTTGTCCCGCCGCCCGCGACT
GCATCTACATGTGCTGCAATCCGCTGCATTGGTTTCGCATCCTGCACCAG
CCCGAAACAGAATCCCCAACACCGCCGTACCAACGCTCAAAAATGCTGAG
ACTGAAAGATGCAGATTTCGAAGAAGACTCGCAGAACGATGCAAAGTCGG
CAGCGCTCAGCACGTGGAGTGCCGAAAGCACCAGCATTTCGAACATCTAC
AAGCCGGCTCTCTACGAGTCGGTTACCACTGATGGAAAAGATCATAACAT
CAACAGTCAGGTGTGGTGCCAAATCGCCTACTGGGAGATGGCCCACCGCG
TCGGGGAGTTCTTTCACGCCAAAACGAATGCAGTCAATATCTACACGGAT
GGGATTGTGGCCAGTGAGGTGGACAGCATGTGCCTACGTGACCTCACACC
AGCAGGCAATCAGATCCACTCGGTGGTGCCAAAAGCGCGTCATACGGTCG
GATTGGGGGTCACATTGAGTCTGGAGAACGGCGATGTTTGGATCTACAAT
CGTGGGAATACAACCATTTTTGTCGATTCACCCACCCTGTCCGAAAATCT
GGACCGAGTGTGCAAAGTGATGCCGGGCTATTGTCTGAAGGCCTTTGAAA
CCAATAGGGCTGAACTTCTGAGCATGAGAGATCACGGACATCATCCCATG
GGACCCGTCGACTACTTCAGCATTAAGATCAGCTTTGGCAAGGGCTGGGG
ACGCGACTACAAAAGACAGGATATCATGGGCTGCCCCTGCTGGCTGGAGG
TTCACTTTAGTCATCTGCGGTGAAAGCTTTCTAGACCAT

BS08365.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dad-RC 1707 CG5201-PC 1..1707 17..1723 8535 100 Plus
Dad-RB 1707 CG5201-PB 1..1707 17..1723 8535 100 Plus
Dad-RA 1707 CG5201-PA 1..1707 17..1723 8535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dad-RC 3751 CG5201-RC 771..2478 16..1723 8540 100 Plus
Dad-RB 3550 CG5201-RB 570..2277 16..1723 8540 100 Plus
Dad-RA 3767 CG5201-RA 787..2494 16..1723 8540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17057710..17058704 16..1010 4975 100 Plus
3R 32079331 3R 17068469..17068687 1189..1407 1095 100 Plus
3R 32079331 3R 17068968..17069135 1556..1723 840 100 Plus
3R 32079331 3R 17068749..17068901 1406..1558 765 100 Plus
3R 32079331 3R 17064831..17064961 1060..1190 655 100 Plus
3R 32079331 3R 17064714..17064769 1009..1064 280 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:33:47 has no hits.

BS08365.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 16:50:00 Download gff for BS08365.complete
Subject Subject Range Query Range Percent Splice Strand
Dad-RC 772..2477 17..1722 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:54 Download gff for BS08365.complete
Subject Subject Range Query Range Percent Splice Strand
Dad-RA 788..2493 17..1722 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:00 Download gff for BS08365.complete
Subject Subject Range Query Range Percent Splice Strand
Dad-RA 788..2493 17..1722 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:00 Download gff for BS08365.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17068750..17068900 1407..1557 100 -> Plus
3R 17068970..17069134 1558..1722 100   Plus
3R 17057711..17058704 17..1010 100 -> Plus
3R 17064716..17064769 1011..1064 100 -> Plus
3R 17064836..17064961 1065..1190 100 -> Plus
3R 17068471..17068686 1191..1406 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:54 Download gff for BS08365.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12894472..12894622 1407..1557 100 -> Plus
arm_3R 12894692..12894856 1558..1722 100   Plus
arm_3R 12883433..12884426 17..1010 100 -> Plus
arm_3R 12890438..12890491 1011..1064 100 -> Plus
arm_3R 12890558..12890683 1065..1190 100 -> Plus
arm_3R 12894193..12894408 1191..1406 100 -> Plus

BS08365.pep Sequence

Translation from 16 to 1722

> BS08365.pep
MIFPREKKVLWRYASSNNPSNGVSAAPPAQPPRPPPPPHRPRPHQCTPSF
GYSCNEEDSLAMRQTPLPPYSSIACGMDCSSSNSSSCGQSLSLSQGQGHN
NNNSHPYRRLPNHMDVLPPPPSACDRCCTAPGYSCASSCDDMLIDGSDLD
QDRSPDQGQVQPVDRRMISATTFTTMFRKCCGGATESTSGSTLTIPVSTS
RATAHPPQTQAQNGKRFREDFEALMKQLKRKQRNELLLAVKSRLDPPTKT
QRDVVEPTTTTAPTYLQCILIPCKTQTVWEPHVTASRLFFWRELWNAKEL
KRLPTCPAARDCIYMCCNPLHWFRILHQPETESPTPPYQRSKMLRLKDAD
FEEDSQNDAKSAALSTWSAESTSISNIYKPALYESVTTDGKDHNINSQVW
CQIAYWEMAHRVGEFFHAKTNAVNIYTDGIVASEVDSMCLRDLTPAGNQI
HSVVPKARHTVGLGVTLSLENGDVWIYNRGNTTIFVDSPTLSENLDRVCK
VMPGYCLKAFETNRAELLSMRDHGHHPMGPVDYFSIKISFGKGWGRDYKR
QDIMGCPCWLEVHFSHLR*

BS08365.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dad-PC 568 CG5201-PC 1..568 1..568 3116 100 Plus
Dad-PB 568 CG5201-PB 1..568 1..568 3116 100 Plus
Dad-PA 568 CG5201-PA 1..568 1..568 3116 100 Plus
Mad-PA 455 CG12399-PA 98..429 281..563 258 28 Plus
Mad-PB 525 CG12399-PB 168..499 281..563 258 28 Plus