Clone Sequence Records
BS08365.3prime Sequence
937 bp (851 high quality bases) assembled on 2006-01-10
> BS08365.3prime
ATGGTCTAGAAAGCTTTCACCGCAGATGACTAAAGTGAACCTCCAGCCAG
CAGGGGCAGCCCATGATATCCTGTCTTTTGTAGTCGCGTCCCCAGCCCTT
GCCAAAGCTGATCTTAATGCTGAAGTAGTCGACGGGTCCCATGGGATGAT
GTCCGTGATCTCTCATGCTCAGAAGTTCAGCCCTATTGGTTTCAAAGGCC
TTCAGACAATAGCCCGGCATCACTTTGCACACTCGGTCCAGATTTTCGGA
CAGGGTGGGTGAATCGACAAAAATGGTTGTATTCCCACGATTGTAGATCC
AAACATCGCCGTTCTCCAGACTCAATGTGACCCCCAATCCGACCGTATGA
CGCGCTTTTGGCACCACCGAGTGGATCTGATTGCCTGCTGGTGTGAGGTC
ACGTAGGCACATGCTGTCCACCTCACTGGCCACAATCCCATCCGTGTAGA
TATTGACTGCATTCGTTTTGGCGTGAAAGAACTCCCCGACGCGGTGGGCC
ATCTCCCAGTAGGCGATTTGGCACCACACCTGACTGTTGATGTTATGATC
TTTTCCATCAGTGGTAACCGACTCGTAGAGAGCCGGCTTGTAGATGTTCG
AAATGCTGGTGCTTTCGGCACTCCACGTGCTGAGCGCTGCCGACTTTGCA
TCGTTCTGCGAGTCTTCTTCGAAATCTGCATCTTTCAGTCTCAGCATTTT
TGAGCGTTGGTACGGCGGTGTTGGGGATTCTGTTTCGGGCTGGTGCAGGA
TGCGAAACCAATGCAGCGGATTGCAGCACATGTAGATGCAGTCGCGGGCG
GCGGGACAAGTGGGCAGTCGCTTCAGTTCCTTGGCGTTCCACAATTCCCG
CCAGAAAAACAGGCGACTGGCGGTCACGTGCGGCTCCCAAACCGTTTGCG
TTTTGCACGGTATCANGATGCACTGCAGGTAGGTGGG
BS08365.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5201-PA | 1707 | Dad-RA | 787..1707 | 937..17 | 4586 | 99.8 | Minus |
CG5201-PB | 1707 | Dad-RB | 787..1707 | 937..17 | 4586 | 99.8 | Minus |
CG5201-PC | 1707 | Dad-RC | 787..1707 | 937..17 | 4586 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dad-RC | 3751 | CG5201-RC | 1558..2478 | 937..17 | 4594 | 99.9 | Minus |
Dad-RB | 3550 | CG5201-RB | 1357..2277 | 937..17 | 4594 | 99.9 | Minus |
Dad-RA | 3767 | CG5201-RA | 1574..2494 | 937..17 | 4594 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17068469..17068687 | 551..333 | 1095 | 100 | Minus |
3R | 32079331 | 3R | 17058497..17058704 | 937..730 | 1029 | 99.5 | Minus |
3R | 32079331 | 3R | 17068968..17069135 | 184..17 | 840 | 100 | Minus |
3R | 32079331 | 3R | 17068749..17068901 | 334..182 | 765 | 100 | Minus |
3R | 32079331 | 3R | 17064831..17064961 | 680..550 | 655 | 100 | Minus |
3R | 32079331 | 3R | 17064714..17064769 | 731..676 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:53:40 has no hits.
BS08365.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:39:25 Download gff for
BS08365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5201-PB | 787..1707 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:13 Download gff for
BS08365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5201-PC | 787..1707 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:31:03 Download gff for
BS08365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dad-RA | 1574..2502 | 8..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:40:43 Download gff for
BS08365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dad-RA | 1574..2502 | 8..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:40:43 Download gff for
BS08365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17058497..17058704 | 730..937 | 99 | -> | Minus |
3R | 17064716..17064769 | 676..729 | 100 | -> | Minus |
3R | 17064836..17064961 | 550..675 | 100 | -> | Minus |
3R | 17068471..17068686 | 334..549 | 100 | -> | Minus |
3R | 17068750..17068900 | 183..333 | 100 | -> | Minus |
3R | 17068970..17069143 | 8..182 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:31:03 Download gff for
BS08365.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12884219..12884426 | 730..937 | 99 | -> | Minus |
arm_3R | 12890438..12890491 | 676..729 | 100 | -> | Minus |
arm_3R | 12890558..12890683 | 550..675 | 100 | -> | Minus |
arm_3R | 12894193..12894408 | 334..549 | 100 | -> | Minus |
arm_3R | 12894472..12894622 | 183..333 | 100 | -> | Minus |
arm_3R | 12894692..12894865 | 8..182 | 97 | | Minus |
BS08365.5prime Sequence
525 bp (473 high quality bases) assembled on 2006-01-10
> BS08365.5prime
GAAGTTATCAGTCGACATGATATTCCCAAGAGAAAAGAAGGTGTTATGGC
GTTATGCGTCCAGCAACAATCCGAGCAATGGGGTGTCAGCAGCACCGCCC
GCTCAGCCACCACGGCCGCCTCCCCCTCCACATCGACCCCGCCCTCATCA
GTGTACTCCAAGCTTTGGTTATTCCTGCAACGAAGAGGACTCCTTGGCAA
TGCGACAGACGCCGCTGCCGCCTTACAGTTCGATAGCCTGCGGGATGGAC
TGCTCCAGCTCAAACTCCAGCTCCTGTGGCCAGAGTTTGAGTCTGAGTCA
GGGGCAAGGCCACAACAACAACAACAGCCATCCGTACCGCCGTCTGCCAA
ATCACATGGATGTGTTGCCGCCGCCTCCGTCAGCGTGCGACCGCTGCTGT
ACCGCTCCTGGTTACAGCTGCGCAAGCTCCTGCGACGATATGTTGATCGA
CGGAAGCGATCTGGATCAGGATCGGAGTCCGGATCAGGAACAGGTTCAGC
CGGTGGACCGCCGGATGATAAGTGC
BS08365.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5201-PA | 1707 | Dad-RA | 1..509 | 17..525 | 2520 | 99.8 | Plus |
CG5201-PB | 1707 | Dad-RB | 1..509 | 17..525 | 2520 | 99.8 | Plus |
CG5201-PC | 1707 | Dad-RC | 1..509 | 17..525 | 2520 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dad-RC | 3751 | CG5201-RC | 771..1280 | 16..525 | 2535 | 99.8 | Plus |
Dad-RB | 3550 | CG5201-RB | 570..1079 | 16..525 | 2535 | 99.8 | Plus |
Dad-RA | 3767 | CG5201-RA | 787..1296 | 16..525 | 2535 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17057710..17058219 | 16..525 | 2535 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:50:53 has no hits.
BS08365.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:39:26 Download gff for
BS08365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5201-PB | 1..509 | 17..525 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:15 Download gff for
BS08365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5201-PC | 1..509 | 17..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:37 Download gff for
BS08365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dad-RA | 781..1296 | 8..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:39 Download gff for
BS08365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dad-RA | 781..1296 | 8..525 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:39 Download gff for
BS08365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17057704..17058219 | 8..525 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:37 Download gff for
BS08365.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12883426..12883941 | 8..525 | 99 | | Plus |
BS08365.complete Sequence
1739 bp assembled on 2010-05-13
GenBank Submission: KX803527
> BS08365.complete
GAAGTTATCAGTCGACATGATATTCCCAAGAGAAAAGAAGGTGTTATGGC
GTTATGCGTCCAGCAACAATCCGAGCAATGGGGTGTCAGCAGCACCGCCC
GCTCAGCCACCACGGCCGCCTCCCCCTCCACATCGACCCCGCCCTCATCA
GTGTACTCCAAGCTTTGGTTATTCCTGCAACGAAGAGGACTCCTTGGCAA
TGCGACAGACGCCGCTGCCGCCTTACAGTTCGATAGCCTGCGGGATGGAC
TGCTCCAGCTCAAACTCCAGCTCCTGTGGCCAGAGTTTGAGTCTGAGTCA
GGGGCAAGGCCACAACAACAACAACAGCCATCCGTACCGCCGTCTGCCAA
ATCACATGGATGTGTTGCCGCCGCCTCCGTCAGCGTGCGACCGCTGCTGT
ACCGCTCCTGGTTACAGCTGCGCAAGCTCCTGCGACGATATGTTGATCGA
CGGAAGCGATCTGGATCAGGATCGGAGTCCGGATCAGGGACAGGTTCAGC
CGGTGGACCGCCGGATGATAAGTGCCACCACCTTTACGACCATGTTTCGG
AAATGCTGCGGCGGCGCAACGGAGTCCACCAGCGGATCCACACTTACGAT
TCCAGTCAGCACGTCCAGAGCCACCGCTCATCCTCCCCAAACGCAAGCCC
AGAATGGCAAACGATTTCGCGAGGATTTCGAAGCGCTAATGAAGCAACTC
AAGCGCAAGCAGAGAAACGAACTTCTGCTTGCAGTCAAGAGTCGCCTAGA
TCCGCCGACCAAGACGCAGCGCGATGTCGTGGAACCCACCACCACCACCG
CACCCACCTACCTGCAGTGCATCCTGATACCGTGCAAAACGCAAACGGTT
TGGGAGCCGCACGTGACCGCCAGTCGCCTGTTTTTCTGGCGGGAATTGTG
GAACGCCAAGGAACTGAAGCGACTGCCCACTTGTCCCGCCGCCCGCGACT
GCATCTACATGTGCTGCAATCCGCTGCATTGGTTTCGCATCCTGCACCAG
CCCGAAACAGAATCCCCAACACCGCCGTACCAACGCTCAAAAATGCTGAG
ACTGAAAGATGCAGATTTCGAAGAAGACTCGCAGAACGATGCAAAGTCGG
CAGCGCTCAGCACGTGGAGTGCCGAAAGCACCAGCATTTCGAACATCTAC
AAGCCGGCTCTCTACGAGTCGGTTACCACTGATGGAAAAGATCATAACAT
CAACAGTCAGGTGTGGTGCCAAATCGCCTACTGGGAGATGGCCCACCGCG
TCGGGGAGTTCTTTCACGCCAAAACGAATGCAGTCAATATCTACACGGAT
GGGATTGTGGCCAGTGAGGTGGACAGCATGTGCCTACGTGACCTCACACC
AGCAGGCAATCAGATCCACTCGGTGGTGCCAAAAGCGCGTCATACGGTCG
GATTGGGGGTCACATTGAGTCTGGAGAACGGCGATGTTTGGATCTACAAT
CGTGGGAATACAACCATTTTTGTCGATTCACCCACCCTGTCCGAAAATCT
GGACCGAGTGTGCAAAGTGATGCCGGGCTATTGTCTGAAGGCCTTTGAAA
CCAATAGGGCTGAACTTCTGAGCATGAGAGATCACGGACATCATCCCATG
GGACCCGTCGACTACTTCAGCATTAAGATCAGCTTTGGCAAGGGCTGGGG
ACGCGACTACAAAAGACAGGATATCATGGGCTGCCCCTGCTGGCTGGAGG
TTCACTTTAGTCATCTGCGGTGAAAGCTTTCTAGACCAT
BS08365.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dad-RC | 1707 | CG5201-PC | 1..1707 | 17..1723 | 8535 | 100 | Plus |
Dad-RB | 1707 | CG5201-PB | 1..1707 | 17..1723 | 8535 | 100 | Plus |
Dad-RA | 1707 | CG5201-PA | 1..1707 | 17..1723 | 8535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dad-RC | 3751 | CG5201-RC | 771..2478 | 16..1723 | 8540 | 100 | Plus |
Dad-RB | 3550 | CG5201-RB | 570..2277 | 16..1723 | 8540 | 100 | Plus |
Dad-RA | 3767 | CG5201-RA | 787..2494 | 16..1723 | 8540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:33:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17057710..17058704 | 16..1010 | 4975 | 100 | Plus |
3R | 32079331 | 3R | 17068469..17068687 | 1189..1407 | 1095 | 100 | Plus |
3R | 32079331 | 3R | 17068968..17069135 | 1556..1723 | 840 | 100 | Plus |
3R | 32079331 | 3R | 17068749..17068901 | 1406..1558 | 765 | 100 | Plus |
3R | 32079331 | 3R | 17064831..17064961 | 1060..1190 | 655 | 100 | Plus |
3R | 32079331 | 3R | 17064714..17064769 | 1009..1064 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:33:47 has no hits.
BS08365.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 16:50:00 Download gff for
BS08365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dad-RC | 772..2477 | 17..1722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:54 Download gff for
BS08365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dad-RA | 788..2493 | 17..1722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:00 Download gff for
BS08365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dad-RA | 788..2493 | 17..1722 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:00 Download gff for
BS08365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17068750..17068900 | 1407..1557 | 100 | -> | Plus |
3R | 17068970..17069134 | 1558..1722 | 100 | | Plus |
3R | 17057711..17058704 | 17..1010 | 100 | -> | Plus |
3R | 17064716..17064769 | 1011..1064 | 100 | -> | Plus |
3R | 17064836..17064961 | 1065..1190 | 100 | -> | Plus |
3R | 17068471..17068686 | 1191..1406 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:54 Download gff for
BS08365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12894472..12894622 | 1407..1557 | 100 | -> | Plus |
arm_3R | 12894692..12894856 | 1558..1722 | 100 | | Plus |
arm_3R | 12883433..12884426 | 17..1010 | 100 | -> | Plus |
arm_3R | 12890438..12890491 | 1011..1064 | 100 | -> | Plus |
arm_3R | 12890558..12890683 | 1065..1190 | 100 | -> | Plus |
arm_3R | 12894193..12894408 | 1191..1406 | 100 | -> | Plus |
BS08365.pep Sequence
Translation from 16 to 1722
> BS08365.pep
MIFPREKKVLWRYASSNNPSNGVSAAPPAQPPRPPPPPHRPRPHQCTPSF
GYSCNEEDSLAMRQTPLPPYSSIACGMDCSSSNSSSCGQSLSLSQGQGHN
NNNSHPYRRLPNHMDVLPPPPSACDRCCTAPGYSCASSCDDMLIDGSDLD
QDRSPDQGQVQPVDRRMISATTFTTMFRKCCGGATESTSGSTLTIPVSTS
RATAHPPQTQAQNGKRFREDFEALMKQLKRKQRNELLLAVKSRLDPPTKT
QRDVVEPTTTTAPTYLQCILIPCKTQTVWEPHVTASRLFFWRELWNAKEL
KRLPTCPAARDCIYMCCNPLHWFRILHQPETESPTPPYQRSKMLRLKDAD
FEEDSQNDAKSAALSTWSAESTSISNIYKPALYESVTTDGKDHNINSQVW
CQIAYWEMAHRVGEFFHAKTNAVNIYTDGIVASEVDSMCLRDLTPAGNQI
HSVVPKARHTVGLGVTLSLENGDVWIYNRGNTTIFVDSPTLSENLDRVCK
VMPGYCLKAFETNRAELLSMRDHGHHPMGPVDYFSIKISFGKGWGRDYKR
QDIMGCPCWLEVHFSHLR*
BS08365.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:10:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dad-PC | 568 | CG5201-PC | 1..568 | 1..568 | 3116 | 100 | Plus |
Dad-PB | 568 | CG5201-PB | 1..568 | 1..568 | 3116 | 100 | Plus |
Dad-PA | 568 | CG5201-PA | 1..568 | 1..568 | 3116 | 100 | Plus |
Mad-PA | 455 | CG12399-PA | 98..429 | 281..563 | 258 | 28 | Plus |
Mad-PB | 525 | CG12399-PB | 168..499 | 281..563 | 258 | 28 | Plus |