Clone Sequence Records
BS08366.3prime Sequence
786 bp (783 high quality bases) assembled on 2006-01-10
> BS08366.3prime
ATGGTCTAGAAAGCTTCTAGTGCGCAAAGTTTCGGAGAGCGGCCACAACT
CCAGTTCCATAGATGAGCTTCTCCTCCACACGCTGCCAAGCCTCCTGCTG
CACCTGGGACACAGTGCGCAGCTCCTTTACCAAATCCGGGAACTCCGTCA
ACCCGAGACCGTGGGATCGCAAGAAGACGCTTAGATACGATTGAGCCAGC
TCAAAGTTCAGATTGGTTCCAAACATGAACTTAACGAGTTTGAGGAACTG
CAGCATGGCAAGGAGTGTTCCTCCAGCCTCCGGGTGCAGAGATTTGATCT
CAAAGTCAACCATCGATGGTCCTAGTTGGGTCAAGTGCGCCACAGCCGAT
GCGAAGTCCAGGGAGTCAGCAGTTTCCTCCAGCAGCTGGCCAAAGGCAGT
AAGATTGTTGAGAGTAGAAGCCTTCCGAATCCGGGATTCATCCTCCTCCT
TCTGACCGTTCTCCACATCGAAGCGCAGTTCCAGTCCCGAAACCGTGGGC
AGGAAGAATGGGGCCTGTTTGGGAGCTTTTGGTGGTGCCTTGGGCTTGTT
ACGTTGCTTGATTAGCTCCAAATCCAATAGATTCTGCCAACGGGATGCAG
CCAACCCGGATAGCGTTATCAGTTCCTCGGACAGCTGCGTTGGAGTTTCG
TACTTGGTGTCAACTAGCTCGCCGAGTTTTGACTCGTCCTCTTCGTCGAT
CTCTAGCTCCTTCATGCCATCTTCCAGTTCCATGGCATCGCACACATTCG
TGGGCAATCCCACGTACGGAGCCGGCTCCAAAGGAT
BS08366.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9799-PA | 2769 | CG9799-RA | 2000..2769 | 786..17 | 3850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9799-RA | 2939 | CG9799-RA | 2108..2877 | 786..17 | 3850 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:51:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13385710..13386479 | 17..786 | 3850 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:51:26 has no hits.
BS08366.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:39:27 Download gff for
BS08366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9799-PA | 2000..2769 | 17..786 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:17 Download gff for
BS08366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9799-PA | 2000..2769 | 17..786 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:01:48 Download gff for
BS08366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9799-RA | 2108..2881 | 9..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:38 Download gff for
BS08366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9799-RA | 2108..2881 | 9..786 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:38 Download gff for
BS08366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13385706..13386479 | 9..786 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:01:48 Download gff for
BS08366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9211428..9212201 | 9..786 | 99 | | Plus |
BS08366.5prime Sequence
913 bp (762 high quality bases) assembled on 2006-01-10
> BS08366.5prime
GAAGTTATCAGTCGACATGACGCATCTGCGGTCGGAGGATAAGCCACAGT
CGGAGGAGCGGAAGTCTGTGTTCAAGGAGAGCAGCTGCATCTTCCGGCGG
AATCGAGCCCTCGGCTATGTGAGCAACCAGGTTCCAGCAGTCACCCGCTA
CGTGCAGCGTCGTCGGGACACTTTGCTGATCACCTGCATCGGCAGATCTT
TTCAGGTGTACACCGCCAACCACTTTCGCCTGCTGCACGTTAGCGGATTG
CATCCGGACGAGATTACGGCTCTGGCCACGGATCGACTGCACACGTACAC
GGCGAGCAACAAGTGTATCTACGCCTGGCGGGCGGGCAAACACATCCGGC
ACGTGTACCGTGGCCACCAGAAAGATGTCCACCTCCTGCTGCCTTTTGGT
TCCAGTTTGATAGCCATCGATAGGCAGAATGTGTTAAAAGTGTGGAATAT
TTCAACCGAGGATGTCTATTTGGAAGTGCCCTTCCGGTCTGAGGAGTTCC
AGATCACAGCTGTGACCCATCCGCCCACGTACATCAATAAAATAGTACTA
GGCTCCCAGCAGGGCCAACTAAAGATCTTGAACATAAAGAAGAACAGTGT
GGTGTGCACTTTGAGTCACCACGACAGCAGGATCACCTGCATTGAACCGT
CCCCTGCTTTGGATGTCGTGGCCGTGGGACACGGGGATGGCACTATTATC
TTGCTTAACCTTAAGTTCGACGAGGTGCTTATGAGCTTCCAGCAGGATTG
GGGTCAGGTCACCAACCTTTCCTTCCGTACCGACGGCCCACCAATCCTTG
TGTCCGCCTGCAGCAATGGTTACATGGCCTTCTGGAACCTGGAGGAGCGC
AAGTTAGCCGGTCAGCTGCAAGCGCACGAAGAGTCGGTGACCACGGCCAT
TTGTCTGCCAAGC
BS08366.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9799-PA | 2769 | CG9799-RA | 1..893 | 17..909 | 4440 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9799-RA | 2939 | CG9799-RA | 109..1005 | 17..913 | 4455 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13387705..13388601 | 913..17 | 4455 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:42:40 has no hits.
BS08366.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:39:29 Download gff for
BS08366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9799-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:18 Download gff for
BS08366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9799-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:20:25 Download gff for
BS08366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9799-RA | 102..1005 | 9..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:58 Download gff for
BS08366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9799-RA | 102..1005 | 9..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:58 Download gff for
BS08366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13387705..13388608 | 9..913 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:20:25 Download gff for
BS08366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9213427..9214330 | 9..913 | 99 | | Minus |
BS08366.complete Sequence
2801 bp assembled on 2010-05-10
GenBank Submission: KX801467
> BS08366.complete
GAAGTTATCAGTCGACATGACGCATCTGCGGTCGGAGGATAAGCCACAGT
CGGAGGAGCGGAAGTCTGTGTTCAAGGAGAGCAGCTGCATCTTCCGGCGG
AATCGAGCCCTCGGCTATGTGAGCAACCAGGTTCCAGCAGTCACCCGCTA
CGTGCAGCGTCGTCGGGACACTTTGCTGATCACCTGCATCGGCAGATCTT
TTCAGGTGTACACCGCCAACCACTTTCGCCTGCTGCACGTTAGCGGATTG
CATCCGGACGAGATTACGGCTCTGGCCACGGATCGACTGCACACGTACAC
GGCGAGCAACAAGTGTATCTACGCCTGGCGGGCGGGCAAACACATCCGGC
ACGTGTACCGTGGCCACCAGAAAGATGTCCACCTCCTGCTGCCTTTTGGT
TCCAGTTTGATAGCCATCGATAGGCAGAATGTGTTAAAAGTGTGGAATAT
TTCAACCGAGGATGTCTATTTGGAAGTGCCCTTCCGGTCTGAGGAGTTCC
AGATCACAGCTGTGACCCATCCGCCCACGTACATCAATAAAATAGTACTA
GGCTCCCAGCAGGGCCAACTAAAGATCTTGAACATAAAGAAGAACAGTGT
GGTGTGCACTTTGAGTCACCACGACAGCAGGATCACCTGCATTGAACCGT
CCCCTGCTTTGGATGTCGTGGCCGTGGGACACGGGGATGGCACTATTATC
TTGCTTAACCTTAAGTTCGACGAGGTGCTTATGAGCTTCCAGCAGGATTG
GGGTCAGGTCACCAACCTTTCCTTCCGTACCGACGGCCCACCAATCCTTG
TGTCCGCCTGCAGCAATGGTTACATGGCCTTCTGGAACCTGGAGGAGCGC
AAGTTAGCCGGTCAGCTGCAAGCGCACGAGGAGTCGGTGACCACGGCCAT
TTGTCTGCCCAGCGAGCCCGTGGTCTTCACCACTTCACCAGACAATTCAA
TGAGGATGTTTGTTTTCGATATGCCAGATGGTGGTGCCAGACAGCTGAGG
ATCCGCGAGGGACACACAAAGCCGCCGTTTTGTATTCGCTACCACGGCAG
CTCGGGCGTATCCATTCTCTCTTCGGGCGAGGACAGCACCATGAGAGTCT
TCTCCACCATTTCCGAATCGCTGAACAAGAGCATGGGCAGGGCTACCTAC
AATCCAAAAGCCACAAAGAAGAAGAATCGCTTTGAGCACGATAAGTTTGG
AATGCCACCCATACTGGAGTTCACATCGGATACGGCTCGCGAAAAGGAGT
GGGATAACATCGCTGCCATCCATGCGGGCGTTATTCAGACGACAACCTGG
TCGTTTGGCAAGAACCGTATGGGCGAGCACCGCCTGGTTCCGAAACAGTT
CCAAAACAGCAACCGCACCAACTTCCAGAACGAGACCACATGCATTGTGC
TGACGCACTGTGGCAACTTTGTGATCATTGGCTATAGCAGTGGCGACATT
GAGCGCTTTAATATCCAGTCTGGACTCCATCGGGCTACCTATGGCTCTCC
AGCCCACAAGATGGCAGTACGCGGCTTGGCCAGCGACAATCTTAACCAAA
CCGTCATCTCTGGCTGTTCGGAAGGCTTGCTCAAGTTCTGGTCATTCAAA
GGAAAGGTTGACAAGCCCTTAGCGACTCTACGCCTGGCAGATGGAATCGC
CCTGATTCGACAGCACCGAGAGAGCTCCATGCTGGCCATTGGTCTGGAAA
CATTCAAGATTTTTGTCGTAGACATGCACACGAGGGTCATTGTTCGCAAG
TTCGTCGGTCACACAGCCAAGCTGAATGACCTCACTTTCAGTCCGGATAG
CCGCTGGCTGATCACCGCCGCCATGGACTCCACGATCAAGGTGTGGGACA
TACCTTCCTCCTACATGGTGGATCACTTCCGCGTCGAGGCGCCTTGCGTA
TCGTTAAGTATGTCGCCTAATGGCGACTTTCTGGCCACCGCACATGTTGG
ACTTTTGGGCATTTACCTGTGGGCCAACAAGACGCTGTTTAATCAGATTT
CCCTGCGCTCCATCGATCCTTTGGAGCCGGCTCCGTACGTGGGATTGCCC
ACGAATGTGTGCGATGCCATGGAACTGGAAGATGGCATGAAGGAGCTAGA
GATCGACGAAGAGGACGAGTCAAAACTCGGCGAGCTAGTTGACACCAAGT
ACGAAACTCCAACGCAGCTGTCCGAGGAACTGATAACGCTATCCGGGTTG
GCTGCATCCCGTTGGCAGAATCTATTGGATTTGGAGCTAATCAAGCAACG
TAACAAGCCCAAGGCACCACCAAAAGCTCCCAAACAGGCCCCATTCTTCC
TGCCCACGGTTTCGGGACTGGAACTGCGCTTCGATGTGGAGAACGGTCAG
AAGGAGGAGGATGAATCCCGGATTCGGAAGGCTTCTACTCTCAACAATCT
TACTGCCTTTGGCCAGCTGCTGGAGGAAACTGCTGACTCCCTGGACTTCG
CATCGGCTGTGGCGCACTTGACCCAACTAGGACCATCGATGGTTGACTTT
GAGATCAAATCTCTGCACCCGGAGGCTGGAGGAACACTCCTTGCCATGCT
GCAGTTCCTCAAACTCGTTAAGTTCATGTTTGGAACCAATCTGAACTTTG
AGCTGGCTCAATCGTATCTAAGCGTCTTCTTGCGATCCCACGGTCTCGGG
TTGACGGAGTTCCCGGATTTGGTAAAGGAGCTGCGCACTGTGTCCCAGGT
GCAGCAGGAGGCTTGGCAGCGTGTGGAGGAGAAGCTCATCTATGGAACTG
GAGTTGTGGCCGCTCTCCGAAACTTTGCGCACTAGAAGCTTTCTAGACCA
T
BS08366.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9799-RA | 2769 | CG9799-PA | 1..2769 | 17..2785 | 13845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9799-RA | 2939 | CG9799-RA | 109..2877 | 17..2785 | 13845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13385710..13386888 | 2785..1607 | 5895 | 100 | Minus |
| 3R | 32079331 | 3R | 13387443..13388601 | 1175..17 | 5795 | 100 | Minus |
| 3R | 32079331 | 3R | 13386948..13387379 | 1607..1176 | 2160 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:44:19 has no hits.
BS08366.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:10 Download gff for
BS08366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9799-RA | 107..2875 | 17..2785 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:26:15 Download gff for
BS08366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9799-RA | 109..2877 | 17..2785 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:01 Download gff for
BS08366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9799-RA | 109..2877 | 17..2785 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:01 Download gff for
BS08366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13385710..13386887 | 1608..2785 | 100 | <- | Minus |
| 3R | 13386948..13387379 | 1176..1607 | 100 | <- | Minus |
| 3R | 13387443..13388601 | 17..1175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:26:15 Download gff for
BS08366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9211432..9212609 | 1608..2785 | 100 | <- | Minus |
| arm_3R | 9212670..9213101 | 1176..1607 | 100 | <- | Minus |
| arm_3R | 9213165..9214323 | 17..1175 | 100 | | Minus |
BS08366.pep Sequence
Translation from 16 to 2784
> BS08366.pep
MTHLRSEDKPQSEERKSVFKESSCIFRRNRALGYVSNQVPAVTRYVQRRR
DTLLITCIGRSFQVYTANHFRLLHVSGLHPDEITALATDRLHTYTASNKC
IYAWRAGKHIRHVYRGHQKDVHLLLPFGSSLIAIDRQNVLKVWNISTEDV
YLEVPFRSEEFQITAVTHPPTYINKIVLGSQQGQLKILNIKKNSVVCTLS
HHDSRITCIEPSPALDVVAVGHGDGTIILLNLKFDEVLMSFQQDWGQVTN
LSFRTDGPPILVSACSNGYMAFWNLEERKLAGQLQAHEESVTTAICLPSE
PVVFTTSPDNSMRMFVFDMPDGGARQLRIREGHTKPPFCIRYHGSSGVSI
LSSGEDSTMRVFSTISESLNKSMGRATYNPKATKKKNRFEHDKFGMPPIL
EFTSDTAREKEWDNIAAIHAGVIQTTTWSFGKNRMGEHRLVPKQFQNSNR
TNFQNETTCIVLTHCGNFVIIGYSSGDIERFNIQSGLHRATYGSPAHKMA
VRGLASDNLNQTVISGCSEGLLKFWSFKGKVDKPLATLRLADGIALIRQH
RESSMLAIGLETFKIFVVDMHTRVIVRKFVGHTAKLNDLTFSPDSRWLIT
AAMDSTIKVWDIPSSYMVDHFRVEAPCVSLSMSPNGDFLATAHVGLLGIY
LWANKTLFNQISLRSIDPLEPAPYVGLPTNVCDAMELEDGMKELEIDEED
ESKLGELVDTKYETPTQLSEELITLSGLAASRWQNLLDLELIKQRNKPKA
PPKAPKQAPFFLPTVSGLELRFDVENGQKEEDESRIRKASTLNNLTAFGQ
LLEETADSLDFASAVAHLTQLGPSMVDFEIKSLHPEAGGTLLAMLQFLKL
VKFMFGTNLNFELAQSYLSVFLRSHGLGLTEFPDLVKELRTVSQVQQEAW
QRVEEKLIYGTGVVAALRNFAH*
BS08366.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:12:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9799-PA | 922 | CG9799-PA | 1..922 | 1..922 | 4791 | 100 | Plus |
