Clone Sequence Records
BS08401.3prime Sequence
916 bp (833 high quality bases) assembled on 2006-01-10
> BS08401.3prime
ATGGTCTAGAAAGCTTTTAGTTGTCCTTCTTGATGCGGGTAGAGGTCATG
CGGTAAATGATGGAGTCCCTGCCGGGATCCATGGCAGCGATGGCGTAGCA
GATAGCCAGCAGAGACAGTCCGAAGACGACCATGAACCACAGGATGATGT
TGAAGATCACCGGGTAGTCGCTGCCGTAGTAGACGGCCAGGTTGTAGGGA
TTGGTGGTGGAAGCGGCAATGGTATCACGCTTGGCACGCGATGCTGCCAC
GTCCTTCTCCGTGGTCTGGACAAACAGAACCGAGTCGCTGGACTTCTGGG
AGGCAGCAAGCAGGCGGCTGATAGCGGCCGACAGCAATTTGTTGGCCTCC
TCCACGGCCACGGACTTCTCGCCATGAGCCTTGGCCACTCCATCGACGGA
AACGCGCAGCATCAGGACATTCGAGGGCTTGGCCATCTCAGCCAGATGAT
CGGCGGCACTGTTGATGAATCCAACCTCCTGGAGGAACTGCTTGTCAGCG
GTGTGCAGAGAGGGGTTCAGGTGCTTGGTGGGCTTGGCGGCTGGGGCCTC
GAAATCACCAAAGCAGGACTTCCAGGCTTGAACGCCATCGTCGAACTGCT
CAAAGTTAATATCGCAGACGGGCTCGTTGGCTGCCTCCAGTTCGGCGGCC
AGGGCGTTCAGAGAGGCGTCCGTTCCGGAGCCTGTCAGCTCGTAGGTCTT
GACGTTGCCGGCGGTGGTCACGTGACCAATGCCCTGGACATGCACCAGAA
TGACGCCCTTGGCCAGGTTGAAGGGATCGTTGATGGTCAGTCCGTTCCAG
TTGGTATCGCCGCTGACGGCGTTGCCCATGGAAGCGTAGAGTACATCACC
CACGTAGTGGCTTTTCAGTGCATCGTTGCCCTTGAAACTGATTGCCTTGG
GACGGTTCAGCACGGT
BS08401.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8444-PA | 963 | CG8444-RA | 64..963 | 916..17 | 4475 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:29:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaM8.9-RA | 1468 | CG8444-RA | 151..1050 | 916..17 | 4485 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:29:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9261606..9262172 | 583..17 | 2835 | 100 | Minus |
3R | 32079331 | 3R | 9261011..9261345 | 916..582 | 1660 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:29:07 has no hits.
BS08401.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:39:34 Download gff for
BS08401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8444-PA | 64..963 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:25 Download gff for
BS08401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8444-PA | 64..963 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:52:29 Download gff for
BS08401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM8.9-RA | 151..1050 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:41 Download gff for
BS08401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM8.9-RA | 151..1050 | 17..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:41 Download gff for
BS08401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9261011..9261343 | 584..916 | 99 | -> | Minus |
3R | 9261606..9262172 | 17..583 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:52:29 Download gff for
BS08401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5086733..5087065 | 584..916 | 99 | -> | Minus |
arm_3R | 5087328..5087894 | 17..583 | 100 | | Minus |
BS08401.5prime Sequence
952 bp (737 high quality bases) assembled on 2006-01-10
> BS08401.5prime
GAAGTTATCAGTCGACATGTTGAGAGTTTTCGTGATTTTCTCGCTGTTTA
TAGCGGCCATCAATGCCTCTGGCGAATTCACCGTGCTGAACCGTCCCAAG
GCAATCAGTTTCAAGGGCAACGATGCACTGGAAAGCCACTACGTGGGTGA
TGTACTCTACGCTTCCATGGGCAACGCCGTCAGCGGCGATACCAACTGGA
ACGGACTGACCATCAACGATCCCTTCAACCTGGCCAAGGGCGTCATTCTG
GTGCATGTCCAGGGCATTGGTCACGTGACCACCGCCGGCAACGTCAAGAC
CTACGAGCTGACAGGCTCCGGAACGGACGCCTCTCTGAACGCCCTGGCCG
CCGAACTGGAGGCAGCCAACGAGCCCGTCTGCGATATTAACTTTGAGCAG
TTCGACGATGGCGTTCAAGCCTGGAAGTCCTGCTTTGGTGATTTCGAGGC
CCCAGCCGCCAAGCCCACCAAGCACCTGAACCCCTCTCTGCACACCGCTG
ACAAGCAGTTCCTCCAGGAGGTTGGATTCATCAACAGTGCCGCCGATCAT
CTGGCTGAGATGGCCAAGCCCTCGAATGTCCTGATGCTGCGCGTTTCCGT
CGATGGAGTGGCCAAGGCTCATGGCGAGAAGTCCGTGGCCGTGGAGGAGG
CCAACAAATTGCTGTCGGCCGCTATCAGCCGCCTGCTTGCTGCCTCCCAG
AAGTCCAGCGACTCGGTTCTGTTTGTCCAGACCACGGAGAAGGACGTGGC
AGCATCGCGTGCCAAGCGTGATACCATTGCCGCTTCCACCACCAATCCCT
ACAACCTGGCCGTCTACTACGGCAGCGACTACCCGGTGATCTTCAACATC
ATCCTGTGGTTCATGGTCGTCTTCGGACTGTCTCTGCTGGCTATCTGCTA
CGCCATCGCTGCCATGGATCCCGGCAGGGACTCCATCATTTACCGCATGA
CC
BS08401.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8444-PA | 963 | CG8444-RA | 1..936 | 17..952 | 4680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:21:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaM8.9-RA | 1468 | CG8444-RA | 88..1023 | 17..952 | 4680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9261606..9262145 | 413..952 | 2700 | 100 | Plus |
3R | 32079331 | 3R | 9260991..9261345 | 60..414 | 1775 | 100 | Plus |
3R | 32079331 | 3R | 9260725..9260767 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:21:20 has no hits.
BS08401.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:39:36 Download gff for
BS08401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8444-PA | 1..936 | 17..952 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:26 Download gff for
BS08401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8444-PA | 1..936 | 17..952 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:40:07 Download gff for
BS08401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM8.9-RA | 88..1023 | 17..952 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:50 Download gff for
BS08401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM8.9-RA | 88..1023 | 17..952 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:50 Download gff for
BS08401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9260725..9260767 | 17..59 | 100 | -> | Plus |
3R | 9260991..9261343 | 60..412 | 100 | -> | Plus |
3R | 9261606..9262145 | 413..952 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:40:07 Download gff for
BS08401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5086447..5086489 | 17..59 | 100 | -> | Plus |
arm_3R | 5086713..5087065 | 60..412 | 100 | -> | Plus |
arm_3R | 5087328..5087867 | 413..952 | 100 | | Plus |
BS08401.complete Sequence
995 bp (995 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636144
> BS08401.complete
GAAGTTATCAGTCGACATGTTGAGAGTTTTCGTGATTTTCTCGCTGTTTA
TAGCGGCCATCAATGCCTCTGGCGAATTCACCGTGCTGAACCGTCCCAAG
GCAATCAGTTTCAAGGGCAACGATGCACTGGAAAGCCACTACGTGGGTGA
TGTACTCTACGCTTCCATGGGCAACGCCGTCAGCGGCGATACCAACTGGA
ACGGACTGACCATCAACGATCCCTTCAACCTGGCCAAGGGCGTCATTCTG
GTGCATGTCCAGGGCATTGGTCACGTGACCACCGCCGGCAACGTCAAGAC
CTACGAGCTGACAGGCTCCGGAACGGACGCCTCTCTGAACGCCCTGGCCG
CCGAACTGGAGGCAGCCAACGAGCCCGTCTGCGATATTAACTTTGAGCAG
TTCGACGATGGCGTTCAAGCCTGGAAGTCCTGCTTTGGTGATTTCGAGGC
CCCAGCCGCCAAGCCCACCAAGCACCTGAACCCCTCTCTGCACACCGCTG
ACAAGCAGTTCCTCCAGGAGGTTGGATTCATCAACAGTGCCGCCGATCAT
CTGGCTGAGATGGCCAAGCCCTCGAATGTCCTGATGCTGCGCGTTTCCGT
CGATGGAGTGGCCAAGGCTCATGGCGAGAAGTCCGTGGCCGTGGAGGAGG
CCAACAAATTGCTGTCGGCCGCTATCAGCCGCCTGCTTGCTGCCTCCCAG
AAGTCCAGCGACTCGGTTCTGTTTGTCCAGACCACGGAGAAGGACGTGGC
AGCATCGCGTGCCAAGCGTGATACCATTGCCGCTTCCACCACCAATCCCT
ACAACCTGGCCGTCTACTACGGCAGCGACTACCCGGTGATCTTCAACATC
ATCCTGTGGTTCATGGTCGTCTTCGGACTGTCTCTGCTGGCTATCTGCTA
CGCCATCGCTGCCATGGATCCCGGCAGGGACTCCATCATTTACCGCATGA
CCTCTACCCGCATCAAGAAGGACAACTAAAAGCTTTCTAGACCAT
BS08401.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:53:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaM8.9-RA | 963 | CG8444-PA | 1..963 | 17..979 | 4815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaM8.9-RA | 1468 | CG8444-RA | 88..1050 | 17..979 | 4815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9261606..9262172 | 413..979 | 2835 | 100 | Plus |
3R | 32079331 | 3R | 9260991..9261345 | 60..414 | 1775 | 100 | Plus |
3R | 32079331 | 3R | 9260725..9260767 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:53:13 has no hits.
BS08401.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:27 Download gff for
BS08401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8444-RA | 1..963 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:26 Download gff for
BS08401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8444-RA | 85..1047 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:42 Download gff for
BS08401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM8.9-RA | 93..1048 | 22..977 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:27 Download gff for
BS08401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8444-RA | 85..1047 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:19 Download gff for
BS08401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM8.9-RA | 93..1048 | 22..977 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:19 Download gff for
BS08401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9260730..9260767 | 22..59 | 100 | -> | Plus |
3R | 9260991..9261343 | 60..412 | 100 | -> | Plus |
3R | 9261606..9262170 | 413..977 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:42 Download gff for
BS08401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5086452..5086489 | 22..59 | 100 | -> | Plus |
arm_3R | 5086713..5087065 | 60..412 | 100 | -> | Plus |
arm_3R | 5087328..5087892 | 413..977 | 100 | | Plus |
BS08401.pep Sequence
Translation from 16 to 978
> BS08401.pep
MLRVFVIFSLFIAAINASGEFTVLNRPKAISFKGNDALESHYVGDVLYAS
MGNAVSGDTNWNGLTINDPFNLAKGVILVHVQGIGHVTTAGNVKTYELTG
SGTDASLNALAAELEAANEPVCDINFEQFDDGVQAWKSCFGDFEAPAAKP
TKHLNPSLHTADKQFLQEVGFINSAADHLAEMAKPSNVLMLRVSVDGVAK
AHGEKSVAVEEANKLLSAAISRLLAASQKSSDSVLFVQTTEKDVAASRAK
RDTIAASTTNPYNLAVYYGSDYPVIFNIILWFMVVFGLSLLAICYAIAAM
DPGRDSIIYRMTSTRIKKDN*
BS08401.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaM8.9-PA | 320 | CG8444-PA | 1..320 | 1..320 | 1622 | 100 | Plus |