Clone BS08401 Report

Search the DGRC for BS08401

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptVhaM8.9-RA
Protein status:BS08401.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08401.3prime Sequence

916 bp (833 high quality bases) assembled on 2006-01-10

> BS08401.3prime
ATGGTCTAGAAAGCTTTTAGTTGTCCTTCTTGATGCGGGTAGAGGTCATG
CGGTAAATGATGGAGTCCCTGCCGGGATCCATGGCAGCGATGGCGTAGCA
GATAGCCAGCAGAGACAGTCCGAAGACGACCATGAACCACAGGATGATGT
TGAAGATCACCGGGTAGTCGCTGCCGTAGTAGACGGCCAGGTTGTAGGGA
TTGGTGGTGGAAGCGGCAATGGTATCACGCTTGGCACGCGATGCTGCCAC
GTCCTTCTCCGTGGTCTGGACAAACAGAACCGAGTCGCTGGACTTCTGGG
AGGCAGCAAGCAGGCGGCTGATAGCGGCCGACAGCAATTTGTTGGCCTCC
TCCACGGCCACGGACTTCTCGCCATGAGCCTTGGCCACTCCATCGACGGA
AACGCGCAGCATCAGGACATTCGAGGGCTTGGCCATCTCAGCCAGATGAT
CGGCGGCACTGTTGATGAATCCAACCTCCTGGAGGAACTGCTTGTCAGCG
GTGTGCAGAGAGGGGTTCAGGTGCTTGGTGGGCTTGGCGGCTGGGGCCTC
GAAATCACCAAAGCAGGACTTCCAGGCTTGAACGCCATCGTCGAACTGCT
CAAAGTTAATATCGCAGACGGGCTCGTTGGCTGCCTCCAGTTCGGCGGCC
AGGGCGTTCAGAGAGGCGTCCGTTCCGGAGCCTGTCAGCTCGTAGGTCTT
GACGTTGCCGGCGGTGGTCACGTGACCAATGCCCTGGACATGCACCAGAA
TGACGCCCTTGGCCAGGTTGAAGGGATCGTTGATGGTCAGTCCGTTCCAG
TTGGTATCGCCGCTGACGGCGTTGCCCATGGAAGCGTAGAGTACATCACC
CACGTAGTGGCTTTTCAGTGCATCGTTGCCCTTGAAACTGATTGCCTTGG
GACGGTTCAGCACGGT

BS08401.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8444-PA 963 CG8444-RA 64..963 916..17 4475 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
VhaM8.9-RA 1468 CG8444-RA 151..1050 916..17 4485 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9261606..9262172 583..17 2835 100 Minus
3R 32079331 3R 9261011..9261345 916..582 1660 99.7 Minus
Blast to na_te.dros performed on 2015-02-11 11:29:07 has no hits.

BS08401.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:39:34 Download gff for BS08401.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8444-PA 64..963 17..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:25 Download gff for BS08401.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8444-PA 64..963 17..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:52:29 Download gff for BS08401.3prime
Subject Subject Range Query Range Percent Splice Strand
VhaM8.9-RA 151..1050 17..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:41 Download gff for BS08401.3prime
Subject Subject Range Query Range Percent Splice Strand
VhaM8.9-RA 151..1050 17..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:41 Download gff for BS08401.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9261011..9261343 584..916 99 -> Minus
3R 9261606..9262172 17..583 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:52:29 Download gff for BS08401.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5086733..5087065 584..916 99 -> Minus
arm_3R 5087328..5087894 17..583 100   Minus

BS08401.5prime Sequence

952 bp (737 high quality bases) assembled on 2006-01-10

> BS08401.5prime
GAAGTTATCAGTCGACATGTTGAGAGTTTTCGTGATTTTCTCGCTGTTTA
TAGCGGCCATCAATGCCTCTGGCGAATTCACCGTGCTGAACCGTCCCAAG
GCAATCAGTTTCAAGGGCAACGATGCACTGGAAAGCCACTACGTGGGTGA
TGTACTCTACGCTTCCATGGGCAACGCCGTCAGCGGCGATACCAACTGGA
ACGGACTGACCATCAACGATCCCTTCAACCTGGCCAAGGGCGTCATTCTG
GTGCATGTCCAGGGCATTGGTCACGTGACCACCGCCGGCAACGTCAAGAC
CTACGAGCTGACAGGCTCCGGAACGGACGCCTCTCTGAACGCCCTGGCCG
CCGAACTGGAGGCAGCCAACGAGCCCGTCTGCGATATTAACTTTGAGCAG
TTCGACGATGGCGTTCAAGCCTGGAAGTCCTGCTTTGGTGATTTCGAGGC
CCCAGCCGCCAAGCCCACCAAGCACCTGAACCCCTCTCTGCACACCGCTG
ACAAGCAGTTCCTCCAGGAGGTTGGATTCATCAACAGTGCCGCCGATCAT
CTGGCTGAGATGGCCAAGCCCTCGAATGTCCTGATGCTGCGCGTTTCCGT
CGATGGAGTGGCCAAGGCTCATGGCGAGAAGTCCGTGGCCGTGGAGGAGG
CCAACAAATTGCTGTCGGCCGCTATCAGCCGCCTGCTTGCTGCCTCCCAG
AAGTCCAGCGACTCGGTTCTGTTTGTCCAGACCACGGAGAAGGACGTGGC
AGCATCGCGTGCCAAGCGTGATACCATTGCCGCTTCCACCACCAATCCCT
ACAACCTGGCCGTCTACTACGGCAGCGACTACCCGGTGATCTTCAACATC
ATCCTGTGGTTCATGGTCGTCTTCGGACTGTCTCTGCTGGCTATCTGCTA
CGCCATCGCTGCCATGGATCCCGGCAGGGACTCCATCATTTACCGCATGA
CC

BS08401.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8444-PA 963 CG8444-RA 1..936 17..952 4680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
VhaM8.9-RA 1468 CG8444-RA 88..1023 17..952 4680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9261606..9262145 413..952 2700 100 Plus
3R 32079331 3R 9260991..9261345 60..414 1775 100 Plus
3R 32079331 3R 9260725..9260767 17..59 215 100 Plus
Blast to na_te.dros performed on 2015-02-04 01:21:20 has no hits.

BS08401.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:39:36 Download gff for BS08401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8444-PA 1..936 17..952 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:26 Download gff for BS08401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8444-PA 1..936 17..952 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:40:07 Download gff for BS08401.5prime
Subject Subject Range Query Range Percent Splice Strand
VhaM8.9-RA 88..1023 17..952 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:50 Download gff for BS08401.5prime
Subject Subject Range Query Range Percent Splice Strand
VhaM8.9-RA 88..1023 17..952 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:50 Download gff for BS08401.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9260725..9260767 17..59 100 -> Plus
3R 9260991..9261343 60..412 100 -> Plus
3R 9261606..9262145 413..952 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:40:07 Download gff for BS08401.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5086447..5086489 17..59 100 -> Plus
arm_3R 5086713..5087065 60..412 100 -> Plus
arm_3R 5087328..5087867 413..952 100   Plus

BS08401.complete Sequence

995 bp (995 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ636144

> BS08401.complete
GAAGTTATCAGTCGACATGTTGAGAGTTTTCGTGATTTTCTCGCTGTTTA
TAGCGGCCATCAATGCCTCTGGCGAATTCACCGTGCTGAACCGTCCCAAG
GCAATCAGTTTCAAGGGCAACGATGCACTGGAAAGCCACTACGTGGGTGA
TGTACTCTACGCTTCCATGGGCAACGCCGTCAGCGGCGATACCAACTGGA
ACGGACTGACCATCAACGATCCCTTCAACCTGGCCAAGGGCGTCATTCTG
GTGCATGTCCAGGGCATTGGTCACGTGACCACCGCCGGCAACGTCAAGAC
CTACGAGCTGACAGGCTCCGGAACGGACGCCTCTCTGAACGCCCTGGCCG
CCGAACTGGAGGCAGCCAACGAGCCCGTCTGCGATATTAACTTTGAGCAG
TTCGACGATGGCGTTCAAGCCTGGAAGTCCTGCTTTGGTGATTTCGAGGC
CCCAGCCGCCAAGCCCACCAAGCACCTGAACCCCTCTCTGCACACCGCTG
ACAAGCAGTTCCTCCAGGAGGTTGGATTCATCAACAGTGCCGCCGATCAT
CTGGCTGAGATGGCCAAGCCCTCGAATGTCCTGATGCTGCGCGTTTCCGT
CGATGGAGTGGCCAAGGCTCATGGCGAGAAGTCCGTGGCCGTGGAGGAGG
CCAACAAATTGCTGTCGGCCGCTATCAGCCGCCTGCTTGCTGCCTCCCAG
AAGTCCAGCGACTCGGTTCTGTTTGTCCAGACCACGGAGAAGGACGTGGC
AGCATCGCGTGCCAAGCGTGATACCATTGCCGCTTCCACCACCAATCCCT
ACAACCTGGCCGTCTACTACGGCAGCGACTACCCGGTGATCTTCAACATC
ATCCTGTGGTTCATGGTCGTCTTCGGACTGTCTCTGCTGGCTATCTGCTA
CGCCATCGCTGCCATGGATCCCGGCAGGGACTCCATCATTTACCGCATGA
CCTCTACCCGCATCAAGAAGGACAACTAAAAGCTTTCTAGACCAT

BS08401.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
VhaM8.9-RA 963 CG8444-PA 1..963 17..979 4815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
VhaM8.9-RA 1468 CG8444-RA 88..1050 17..979 4815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9261606..9262172 413..979 2835 100 Plus
3R 32079331 3R 9260991..9261345 60..414 1775 100 Plus
3R 32079331 3R 9260725..9260767 17..59 215 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:53:13 has no hits.

BS08401.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:27 Download gff for BS08401.complete
Subject Subject Range Query Range Percent Splice Strand
CG8444-RA 1..963 17..979 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:26 Download gff for BS08401.complete
Subject Subject Range Query Range Percent Splice Strand
CG8444-RA 85..1047 17..979 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:42 Download gff for BS08401.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM8.9-RA 93..1048 22..977 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:27 Download gff for BS08401.complete
Subject Subject Range Query Range Percent Splice Strand
CG8444-RA 85..1047 17..979 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:19 Download gff for BS08401.complete
Subject Subject Range Query Range Percent Splice Strand
VhaM8.9-RA 93..1048 22..977 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:19 Download gff for BS08401.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9260730..9260767 22..59 100 -> Plus
3R 9260991..9261343 60..412 100 -> Plus
3R 9261606..9262170 413..977 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:42 Download gff for BS08401.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5086452..5086489 22..59 100 -> Plus
arm_3R 5086713..5087065 60..412 100 -> Plus
arm_3R 5087328..5087892 413..977 100   Plus

BS08401.pep Sequence

Translation from 16 to 978

> BS08401.pep
MLRVFVIFSLFIAAINASGEFTVLNRPKAISFKGNDALESHYVGDVLYAS
MGNAVSGDTNWNGLTINDPFNLAKGVILVHVQGIGHVTTAGNVKTYELTG
SGTDASLNALAAELEAANEPVCDINFEQFDDGVQAWKSCFGDFEAPAAKP
TKHLNPSLHTADKQFLQEVGFINSAADHLAEMAKPSNVLMLRVSVDGVAK
AHGEKSVAVEEANKLLSAAISRLLAASQKSSDSVLFVQTTEKDVAASRAK
RDTIAASTTNPYNLAVYYGSDYPVIFNIILWFMVVFGLSLLAICYAIAAM
DPGRDSIIYRMTSTRIKKDN*

BS08401.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
VhaM8.9-PA 320 CG8444-PA 1..320 1..320 1622 100 Plus