Clone Sequence Records
BS08408.3prime Sequence
998 bp (858 high quality bases) assembled on 2006-01-10
> BS08408.3prime
ATGGTCTAGAAAGCTTCTATGCTATCTTGGCCTTGGGTGGCACTTTCGGT
ATGCGCTTTATCCTCCTGTCCACGATGTGGCGTAGACGCCTGTCCGGCTT
GACCAGCTCGCTCTCTGTCATGGGCTCGATTACCTGGCCCTTGCGCGTGA
TTACTGCCGGACGGGTCAGCATGCGGAACGCCGTCTCCGGCACAAAGTTC
CGGCCAACTGGAGCACGGATACTGGCTTCGTAGTCTGCCAGGGATCGGAA
AGGAAATGGTATGCTGGAGACCATGTGCTGGCGCGCCTGCTTGCTGGCGG
ACTCGTTGAGGTAAAGATTATCCTTATTCTCGTCACGACGCTTTTCCGGA
GCAGCCAACTTAAGAAGAAGCCGCTTGTTTCGTCGCTCCATTACCTCCTT
CGAAATGCCAGCACCCGCCCAGGAACCCCATCCAGGCAGGGCGAGCTGAA
GCTCAGTGTTCTTAAGCTCGGAGTCCTTGCTTTTGTCCCGATTAAAATCA
GCTACAATGTCATCATCCTCGAAGGCTTGACTGATTGTCAACTGGCGTTC
AGCAGCGGCGTCTTCCTCGTCGTATTCAGCTGCTTCATCGTCTATTAGAG
CATCGTTAAAGCCTCCCGAGTTGCCCTTCTTTTGGGTAAACACCAAAGTT
GTCACCTTGTTGGGATCTATGGTATCCACAGCTGGAATTTCCGTGCTTTC
TGTGTTACCTTCAACGTGGGCAGGGATATTATTCTGTGAATTTTTATCCT
CCTCGTAGTTAAGGGGCTCGTCAATCTCTATCTGTTGCTTTGTCTTTTTT
AAAGCCAGACTTTTTAGGTTTTGCAAGACGTCCTTCTTTTTCGCCTTCTT
TCCCTTGACAGGAACTTCTTTAAGTTTGTTTATCCGTTCCCTCAATTTCT
CCATTTTCTTATTTAGTTTGGCTCTGATATGAATCTCGTGTTTCTCAAAA
ATGTCATCAATGGCTTTTGAATTCGGGCTTGCCCTTGGCTCTTTCTGA
BS08408.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12301-PA | 2316 | CG12301-RA | 1350..2316 | 983..17 | 4785 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12301-RA | 2515 | CG12301-RA | 1425..2408 | 998..15 | 4845 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15582283..15583266 | 998..15 | 4830 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-03 09:32:42 has no hits.
BS08408.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:39:46 Download gff for
BS08408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12301-PA | 1336..2316 | 17..997 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:38 Download gff for
BS08408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12301-PA | 1336..2316 | 17..997 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:47:21 Download gff for
BS08408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12301-RA | 1426..2410 | 12..997 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 10:01:18 Download gff for
BS08408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12301-RA | 1426..2410 | 12..997 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 10:01:18 Download gff for
BS08408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15582284..15583268 | 12..997 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:47:21 Download gff for
BS08408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15575384..15576368 | 12..997 | 99 | | Minus |
BS08408.5prime Sequence
936 bp (793 high quality bases) assembled on 2006-01-10
> BS08408.5prime
GAAGTTATCAGTCGACATGAGTGACGACGAGGAGCACTACGAACCAAAGG
CACACAAGAAGCTGCTGCAGGCCATCGGCAGTCTGGGCAAGGTGCAGCAC
ATCCAGAAGTCCACGCGCGACGAGCGGCAGTCGCTCCAGGATGAGTTCCA
GCTGGTAAAAGGTGTTTCGTCAGCGGAAACGGATCATGCCCCCAGAGCCG
TGGGTCTGAACGATCTGGTAGACATCCTACGCACCTCCACCAAGCACAGT
CAGACGGGCAAGAAGCTCAAGAACATCCATGGCAGCAAAAAGGTGCTACA
GAAGCCGCTGGAGAAACCAGCTGCGGATCGAATTAAACGGACCATTGGCT
ACGAGGGAGTTACCAAGAAACTCGGTCGTTGGGATGCTGTGGTGGCTCAA
CAGAGATCTGCGGAGACGCAGATCTTCCCCCTACCATCTGAAACGGTTTA
CGTAAATACTGCGGCAAATGCCAGGCCTCTAAACACCCGGGTCAAGTCCA
ATCTTGCTCAAGAACTCGAGGCTAACAACCGTAAACTACGGGAACTGCGC
AAAGCGCAAATTGGGGATACCACGGATGAAAAGGAGCTGGCCAAGCAAGA
GCGGCTTTTACTACAAAAGAAGCTTACCAGGGACGAACTATTTGCCCGTC
GCAAGGAGCTAGCTTACCTGAAGATGCGCGAGTCTCAAAAGTCAGCAAAG
GCGCGCATGCAAAACAAAATCAAATCGAAAAAGTTCCACAAGCTGCAGAA
GAGACAAAAAATGTTGGAGCAGATGAAGGAGTTCGAGTTGCTGCAGAAAA
CCGATCCAGAGGCGGCGCTGGAAAAGCTTAATGCCCTGGAAAAGAGTCGA
GTGCAGGAGCGTGCCAGCCTGCGGCACAAGAACACCGGTACTTGGGCGAA
GAATCTGCAGATACGGGCCAAGTACGACAAGGATGT
BS08408.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12301-PA | 2316 | CG12301-RA | 1..920 | 17..936 | 4600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12301-RA | 2515 | CG12301-RA | 91..1010 | 17..936 | 4600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15581351..15581868 | 419..936 | 2590 | 100 | Plus |
| 3L | 28110227 | 3L | 15580890..15581294 | 17..421 | 2025 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:44:27 has no hits.
BS08408.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:39:47 Download gff for
BS08408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12301-PA | 1..920 | 17..936 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:40 Download gff for
BS08408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12301-PA | 1..920 | 17..936 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:39:12 Download gff for
BS08408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12301-RA | 91..1010 | 17..936 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:24:09 Download gff for
BS08408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12301-RA | 91..1010 | 17..936 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:24:09 Download gff for
BS08408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15580895..15581294 | 22..421 | 100 | -> | Plus |
| 3L | 15581354..15581868 | 422..936 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:39:12 Download gff for
BS08408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15573995..15574394 | 22..421 | 100 | -> | Plus |
| arm_3L | 15574454..15574968 | 422..936 | 100 | | Plus |
BS08408.complete Sequence
2348 bp assembled on 2008-08-14
GenBank Submission: FJ636145
> BS08408.complete
GAAGTTATCAGTCGACATGAGTGACGACGAGGAGCACTACGAACCAAAGG
CACACAAGAAGCTGCTGCAGGCCATCGGCAGTCTGGGCAAGGTGCAGCAC
ATCCAGAAGTCCACGCGCGACGAGCGGCAGTCGCTCCAGGATGAGTTCCA
GCTGGTAAAAGGTGTTTCGTCAGCGGAAACGGATCATGCCCCCAGAGCCG
TGGGTCTGAACGATCTGGTAGACATCCTACGCACCTCCACCAAGCACAGT
CAGACGGGCAAGAAGCTCAAGAACATCCATGGCAGCAAAAAGGTGCTACA
GAAGCCGCTGGAGAAACCAGCTGCGGATCGAATTAAACGGACCATTGGCT
ACGAGGGAGTTACCAAGAAACTCGGTCGTTGGGATGCTGTGGTGGCTCAA
CAGAGATCTGCGGAGACGCAGATCTTCCCCCTACCATCTGAAACGGTTTA
CGTAAATACTGCGGCAAATGCCAGGCCTCTAAACACCCGGGTCAAGTCCA
ATCTTGCTCAAGAACTCGAGGCTAACAACCGTAAACTACGGGAACTGCGC
AAAGCGCAAATTGGGGATACCACGGATGAAAAGGAGCTGGCCAAGCAAGA
GCGGCTTTTACTACAAAAGAAGCTTACCAGGGACGAACTATTTGCCCGTC
GCAAGGAGCTAGCTTACCTGAAGATGCGCGAGTCTCAAAAGTCAGCAAAG
GCGCGCATGCAAAACAAAATCAAATCGAAAAAGTTCCACAAGCTGCAGAA
GAGACAAAAAATGTTGGAGCAGATGAAGGAGTTCGAGTTGCTGCAGAAAA
CCGATCCAGAGGCGGCGCTGGAAAAGCTTAATGCCCTGGAAAAGAGTCGA
GTGCAGGAGCGTGCCAGCCTGCGGCACAAGAACACCGGTACTTGGGCGAA
GAATCTGCAGATACGGGCCAAGTACGACAAGGATGTGCGAAAGGATCTGG
CCGAGCAGTTGGCTGTTAGCAGGGAACTGACCCAGAAAAAGCAGGTGTCA
GACAGCGAAGATGAAACCACCAAGAAGAGAGTTTTACCCGAGGAGGAGGA
TAATGACTACGATCCCTTTAATCCTTGGACAAAAAGAAAAGCTACAGAGC
AAACGGAAAATGGAAATGGTGAAAGTGAGGGTTCCAATTGGCGGCAATAT
TGGACAAAAAGGAATAAAAACGAAAAGTTACTGGAGGAGCATCGTAGGGA
TTTGGAAGGAGTCCAGGATAATGACGAGCAGGAGGAGAAAGAAACTATTC
GGAAACCATTAATAGAAGTAAAACCTGCTAAGAAGAAACTTAAGAAATCG
AAAGTTAAGATAGAAAATGGCTGGGAGGTGGAAGATATTTGCCCAACTGA
TCAGAAAGAAGCCAAGGCAAGCCCGAATTCAAAAGCCATTGATGACATTT
TTGAGAAACACGAGGATCATATCAGAGCCAAACTAAATAAGAAAATGGAG
AAATTGAGGGAACGGATAAACAAACTTAAAGAAGTTCCTGTCAAGGGAAA
GAAGGCGAAAAAGAAGGACGTCTTGCAAAACCTAAAAAGTCTGGCTTTAA
AAAAGACAAAGCAACAGATAGAGATTGACGAGCCCCTTAACTACGAGGAG
GATAAAAATTCACAGAATAATATCCCTGCCCACGTTGAAGGTAACACAGA
AAGCACGGAAATTCCAGCTGTGGATACCATAGATCCCAACAAGGTGACAA
CTTTGGTGTTTACCCAAAAGAAGGGCAACTCGGGAGGCTTTAACGATGCT
CTAATAGACGATGAAGCAGCTGAATACGACGAGGAAGACGCCGCTGCTGA
ACGCCAGTTGACAATCAGTCAAGCCTTCGAGGATGATGACATTGTAGCTG
ATTTTAATCGGGACAAAAGCAAGGACTCCGAGCTTAAGAACACTGAGCTT
CAGCTCGCCCTGCCTGGATGGGGTTCCTGGGCGGGTGCTGGCATTTCGAA
GGAGGTAATGGAGCGACGAAACAAGCGGCTTCTTCTTAAGTTGGCTGCTC
CGGAAAAGCGTCGTGACGAGAATAAGGATAATCTTTACCTCAACGAGTCC
GCCAGCAAGCAGGCGCGCCAGCACATGGTCTCCAGCATACCATTTCCTTT
CCGATCCCTGGCAGACTACGAAGCCAGTATCCGTGCTCCAGTTGGCCGGA
ACTTTGTGCCGGAGACGGCGTTCCGCATGCTGACCCGTCCGGCAGTAATC
ACGCGCAAGGGCCAGGTAATCGAGCCCATGACAGAGAGCGAGCTGGTCAA
GCCGGACAGGCGTCTACGCCACATCGTGGACAGGAGGATAAAGCGCATAC
CGAAAGTGCCACCCAAGGCCAAGATAGCATAGAAGCTTTCTAGACCAT
BS08408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:50:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12301-RA | 2316 | CG12301-PA | 1..2316 | 17..2332 | 11580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:50:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12301-RA | 2515 | CG12301-RA | 91..2408 | 17..2334 | 11590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:50:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15581351..15583266 | 419..2334 | 9580 | 100 | Plus |
| 3L | 28110227 | 3L | 15580890..15581294 | 17..421 | 2025 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 19:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NOF | 4347 | NOF FB 4347bp Derived from X51937 (g8297) (Rel. 44, Last updated, Version 6). | 432..473 | 1259..1299 | 117 | 78.6 | Plus |
BS08408.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:12 Download gff for
BS08408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12301-RA | 49..2368 | 17..2337 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:30 Download gff for
BS08408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12301-RA | 91..2406 | 17..2332 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:18:09 Download gff for
BS08408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12301-RA | 49..2364 | 17..2332 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:17 Download gff for
BS08408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12301-RA | 91..2406 | 17..2332 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:17 Download gff for
BS08408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15580890..15581294 | 17..421 | 100 | -> | Plus |
| 3L | 15581354..15583264 | 422..2332 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:30 Download gff for
BS08408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15573990..15574394 | 17..421 | 100 | -> | Plus |
| arm_3L | 15574454..15576364 | 422..2332 | 100 | | Plus |
BS08408.pep Sequence
Translation from 16 to 2331
> BS08408.pep
MSDDEEHYEPKAHKKLLQAIGSLGKVQHIQKSTRDERQSLQDEFQLVKGV
SSAETDHAPRAVGLNDLVDILRTSTKHSQTGKKLKNIHGSKKVLQKPLEK
PAADRIKRTIGYEGVTKKLGRWDAVVAQQRSAETQIFPLPSETVYVNTAA
NARPLNTRVKSNLAQELEANNRKLRELRKAQIGDTTDEKELAKQERLLLQ
KKLTRDELFARRKELAYLKMRESQKSAKARMQNKIKSKKFHKLQKRQKML
EQMKEFELLQKTDPEAALEKLNALEKSRVQERASLRHKNTGTWAKNLQIR
AKYDKDVRKDLAEQLAVSRELTQKKQVSDSEDETTKKRVLPEEEDNDYDP
FNPWTKRKATEQTENGNGESEGSNWRQYWTKRNKNEKLLEEHRRDLEGVQ
DNDEQEEKETIRKPLIEVKPAKKKLKKSKVKIENGWEVEDICPTDQKEAK
ASPNSKAIDDIFEKHEDHIRAKLNKKMEKLRERINKLKEVPVKGKKAKKK
DVLQNLKSLALKKTKQQIEIDEPLNYEEDKNSQNNIPAHVEGNTESTEIP
AVDTIDPNKVTTLVFTQKKGNSGGFNDALIDDEAAEYDEEDAAAERQLTI
SQAFEDDDIVADFNRDKSKDSELKNTELQLALPGWGSWAGAGISKEVMER
RNKRLLLKLAAPEKRRDENKDNLYLNESASKQARQHMVSSIPFPFRSLAD
YEASIRAPVGRNFVPETAFRMLTRPAVITRKGQVIEPMTESELVKPDRRL
RHIVDRRIKRIPKVPPKAKIA*
BS08408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12301-PA | 771 | CG12301-PA | 1..771 | 1..771 | 3923 | 100 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1238..1666 | 72..523 | 205 | 24.1 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1238..1666 | 72..523 | 205 | 24.1 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 3945..4522 | 36..624 | 197 | 19.3 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 3984..4561 | 36..624 | 197 | 19.3 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 3493..4132 | 2..624 | 185 | 21.6 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4400..4977 | 36..624 | 183 | 19.8 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 3410..4002 | 8..624 | 176 | 19.3 | Plus |
| rudhira-PE | 2075 | CG43154-PE | 1283..1867 | 51..602 | 164 | 19.6 | Plus |
| rudhira-PC | 2075 | CG43154-PC | 1283..1867 | 51..602 | 164 | 19.6 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4595..5084 | 36..522 | 161 | 19.6 | Plus |
