Clone BS08412 Report

Search the DGRC for BS08412

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:84
Well:12
Vector:pDNR-Dual
Associated Gene/Transcriptmsi-RA
Protein status:BS08412.pep: full length peptide match
Sequenced Size:1853

Clone Sequence Records

BS08412.5prime Sequence

908 bp (796 high quality bases) assembled on 2006-01-10

> BS08412.5prime
GAAGTTATCAGTCGACATGCACGCGCTTCAGGAAGGCGCCACCGTGCTGC
ACCACCAGCAGCCACCGCCACCCACTTCTGGCGAGGATCACCTGCTCACC
GCTGATAGTTTCTTTTATGCACGCAGCAATCCCATGGAGAACGCGGCCGC
AGCAGCCGCCGCCGCAGCAGCGGGCTTGATTGATCCGCACCACAATCGCG
ATCTCCACCAGGCGCTGGTGGCCTCGATAGCCAATAATAGTGTGGCCGCC
ATCGGCGGTGGCCTGACCACAGCGGCAGTCTTGAAGAGTGCCGCTCAGCA
GTCCCAGCAGGCGGTGCAACAGAACCAGAACGCGGTAGTGGTGACACCGG
GACTGGAACAGCCCAAACAGGAACCAGCCCAACAGGCGGCACTGGCGCTG
CTCAAGGAGAATGTAAACGCCTCCGCCGGAGCGGGACAGAACAACGGTCA
GGCGGCCATGGGTGGCAGCAACAAGAGCGGCTCCTCTGGCAGATCCACGC
CCAGCCTGAGCGGAGGCAGTGGCTCCGATCCGGCACCCGGCAAACTCTTT
GTCGGCGGTCTCAGCTGGCAGACGTCGTCTGACAAGCTCAAGGAATACTT
CAACATGTTCGGCACCGTCACCGATGTGCTCATCATGAAGGATCCCGTCA
CCCAGCGCAGTCGCGGCTTTGGTTTCATCACATTCCAAGAACCCTGCACC
GTGGAGAAGGTTCTCAAGGTGCCCATTCACACACTCGATGGCAAGAAGAT
CGATCCCAAGCATGCCACCCCAAAGAATCGACCTCGTCAGGCCAACAAAG
ACAAGAAGATCTTCGTGGGCGGCGTCTCACAGGATACTTCGGCCGAGGAG
GTAAGGCTTACTTCAGCCAGTTCGGACCCGTCGAGGAGACGGTTATGTTG
ATGGACCA

BS08412.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5099-PA 1821 msi-RA 1..782 17..798 3910 100 Plus
CG5099-PB 1905 msi-RB 194..866 126..798 3365 100 Plus
CG5099-PA 1821 msi-RA 837..893 852..908 285 100 Plus
CG5099-PB 1905 msi-RB 921..977 852..908 285 100 Plus
CG5099-PA 1821 msi-RA 786..836 802..852 255 100 Plus
CG5099-PB 1905 msi-RB 870..920 802..852 255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
msi-RA 3984 CG5099-RA 490..1382 17..908 4395 99.7 Plus
msi-RD 2801 CG5099-RD 700..1484 125..908 3855 99.6 Plus
msi-RF 10175 CG5099-RF 788..1571 126..908 3850 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25594964..25595602 17..655 3195 100 Plus
3R 32079331 3R 25599504..25599760 653..908 1190 98.4 Plus
Blast to na_te.dros performed on 2015-02-12 01:47:14 has no hits.

BS08412.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:39:56 Download gff for BS08412.5prime
Subject Subject Range Query Range Percent Splice Strand
msi-PA 1..892 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:52 Download gff for BS08412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5099-PA 1..892 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:51:04 Download gff for BS08412.5prime
Subject Subject Range Query Range Percent Splice Strand
msi-RA 484..1381 9..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:44 Download gff for BS08412.5prime
Subject Subject Range Query Range Percent Splice Strand
msi-RA 484..1381 9..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:44 Download gff for BS08412.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25594958..25595602 9..655 99 -> Plus
3R 25599507..25599759 656..907 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:51:04 Download gff for BS08412.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21420680..21421324 9..655 99 -> Plus
arm_3R 21425229..21425481 656..907 98   Plus

BS08412.3prime Sequence

919 bp (860 high quality bases) assembled on 2006-01-10

> BS08412.3prime
ATGGTCTAGAAAGCTTTTAGACGTACATGCCCATGCCGTACATGGTGCTC
CAATCGACGCCCTGGAAGCTGGACATGTCCACGTTGGCCAGCGCATAGTT
GGAGTAGGCAGCCGCCGGATTGGCAGCAGCGGCGGCGGCGGCAGCAGCGG
CATTCAGGGGATTGCCGGCCATTAAGCCAGCTTGCTGAGCGGCAGCGGCC
AGGCTGTGGGCTCCAGCGGCACCTGCCCCATTCGCGGCATTGGCCGCCAG
GGCGGCAGCCGCTGCTGCCGAGTGCGCCTGCGAAGCGGGATTCGAGACGG
CGTTGTGGTGGCTCTGCTGCTGCTGCTGGGCGGCGGCCACATGGGCATTG
TGGGTCTGCTGCTGGTGATGATGCTGCTGCTGTTGCTGCTGCTGGTGATG
ATGGGCAGCGGCGGCCACGCTTTGCGCCTGATGAGCCTGCATCAAGGCGG
CGTTGGCAGTGGCGGCGCTGGCGGGGATCGAGTAGGGTGCATATCTGACG
CTATGCAGCGCAGTCTGCGGATATGTGGTCAACAGCTTGCCGAAGCCAGC
CTGATTGGCAATCGAGGCTGCCGCAGCGGCGTTTTGTACTTGAAATGGGT
TCTGTGATATGAGGGCGGCCTGCTGGGCGGCAGCGGCTGCTGCCGGGGAT
TGCAGTAGCTGTGTGGGATTTTGAAGCATGGCCAGTGGGTTCATGGTGGC
CACGCCGGCACCACGGGCTCCAATCAGCTGGCCAGGAGCTGTGGGCAGCT
GGACGCCGAGGGTGCCCAACATAATGCGCTTCTGGAGAAGCTGAGCAGCC
GGTGTGACTGCTTCCTTGGGCTGTGCCTTCTTGCACTCGACCTTCTTGTT
CTTGATGGTGTGGAAGTGAATCTCACATACGCGATCGACCACATCCTCAT
TCTCAAAGGTGACAAATCC

BS08412.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5099-PB 1905 msi-RB 1003..1905 919..17 4515 100 Minus
CG5099-PA 1821 msi-RA 919..1821 919..17 4515 100 Minus
CG5488-PA 1938 B-H2-RA 351..389 404..366 145 94.8 Minus
CG3619-PA 2502 Dl-RA 2092..2120 123..151 145 100 Plus
CG3619-PB 2502 Dl-RB 2092..2120 123..151 145 100 Plus
CG14307-PA 1551 fru-RA 573..599 122..148 135 100 Plus
CG14307-PD 1998 fru-RD 573..599 122..148 135 100 Plus
CG14307-PF 2067 fru-RF 573..599 122..148 135 100 Plus
CG14307-PH 2088 fru-RH 573..599 122..148 135 100 Plus
CG14307-PK 2118 fru-RK 603..629 122..148 135 100 Plus
CG14307-PB 2370 fru-RB 876..902 122..148 135 100 Plus
CG14307-PG 2391 fru-RG 876..902 122..148 135 100 Plus
CG14307-PL 2565 fru-RL 573..599 122..148 135 100 Plus
CG14307-PM 2565 fru-RM 573..599 122..148 135 100 Plus
CG14307-PC 2565 fru-RC 573..599 122..148 135 100 Plus
CG14307-PI 2613 fru-RI 621..647 122..148 135 100 Plus
CG14307-PJ 2721 fru-RJ 729..755 122..148 135 100 Plus
CG14307-PE 2868 fru-RE 876..902 122..148 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
msi-RH 2676 CG5099-RH 1385..2287 919..17 4515 100 Minus
msi-RF 10175 CG5099-RF 1597..2499 919..17 4515 100 Minus
msi-RE 2840 CG5099-RE 1549..2451 919..17 4515 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25600268..25600747 496..17 2400 100 Minus
3R 32079331 3R 25599786..25600210 919..495 2125 100 Minus
Blast to na_te.dros performed 2015-02-11 11:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6868 414..302 215 68.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6890 414..261 190 62.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2427 403..302 188 66 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6827 403..302 179 65 Minus
roo 9092 roo DM_ROO 9092bp 1053..1160 412..296 178 68.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2451 403..302 167 67 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2499 440..296 163 62.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6824..6956 403..274 162 60.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2772..2869 403..306 157 62.2 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 641..734 316..409 154 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2529 414..299 132 61.2 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3218..3321 401..302 121 63.8 Minus

BS08412.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:39:55 Download gff for BS08412.3prime
Subject Subject Range Query Range Percent Splice Strand
msi-PB 1003..1905 17..919 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:50 Download gff for BS08412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5099-PA 919..1821 17..919 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:53:22 Download gff for BS08412.3prime
Subject Subject Range Query Range Percent Splice Strand
msi-RE 1549..2451 17..919 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:48:59 Download gff for BS08412.3prime
Subject Subject Range Query Range Percent Splice Strand
msi-RE 1549..2451 17..919 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:48:59 Download gff for BS08412.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25599786..25600210 495..919 100 -> Minus
3R 25600270..25600747 17..494 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:53:22 Download gff for BS08412.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21425508..21425932 495..919 100 -> Minus
arm_3R 21425992..21426469 17..494 100   Minus

BS08412.complete Sequence

1853 bp assembled on 2009-08-24

GenBank Submission: KX800771

> BS08412.complete
GAAGTTATCAGTCGACATGCACGCGCTTCAGGAAGGCGCCACCGTGCTGC
ACCACCAGCAGCCACCGCCACCCACTTCTGGCGAGGATCACCTGCTCACC
GCTGATAGTTTCTTTTATGCACGCAGCAATCCCATGGAGAACGCGGCCGC
AGCAGCCGCCGCCGCAGCAGCGGGCTTGATTGATCCGCACCACAATCGCG
ATCTCCACCAGGCGCTGGTGGCCTCGATAGCCAATAATAGTGTGGCCGCC
ATCGGCGGTGGCCTGACCACAGCGGCAGTCTTGAAGAGTGCCGCTCAGCA
GTCCCAGCAGGCGGTGCAACAGAACCAGAACGCGGTAGTGGTGACACCGG
GACTGGAACAGCCCAAACAGGAACCAGCCCAACAGGCGGCACTGGCGCTG
CTCAAGGAGAATGTAAACGCCTCCGCCGGAGCGGGACAGAACAACGGTCA
GGCGGCCATGGGTGGCAGCAACAAGAGCGGCTCCTCTGGCAGATCCACGC
CCAGCCTGAGCGGAGGCAGTGGCTCCGATCCGGCACCCGGCAAACTCTTT
GTCGGCGGTCTCAGCTGGCAGACGTCGTCTGACAAGCTCAAGGAATACTT
CAACATGTTCGGCACCGTCACCGATGTGCTCATCATGAAGGATCCCGTCA
CCCAGCGCAGTCGCGGCTTTGGTTTCATCACATTCCAAGAACCCTGCACC
GTGGAGAAGGTTCTCAAGGTGCCCATTCACACACTCGATGGCAAGAAGAT
CGATCCCAAGCATGCCACCCCAAAGAATCGACCTCGTCAGGCCAACAAGA
CCAAGAAGATCTTCGTGGGCGGCGTCTCACAGGATACTTCGGCCGAGGAG
GTTAAGGCTTACTTCAGCCAGTTCGGACCCGTCGAGGAGACGGTTATGTT
GATGGACCAGCAGACAAAGCGCCACCGTGGCTTCGGATTTGTCACCTTTG
AGAATGAGGATGTGGTCGATCGCGTATGTGAGATTCACTTCCACACCATC
AAGAACAAGAAGGTCGAGTGCAAGAAGGCACAGCCCAAGGAAGCAGTCAC
ACCGGCTGCTCAGCTTCTCCAGAAGCGCATTATGTTGGGCACCCTCGGCG
TCCAGCTGCCCACAGCTCCTGGCCAGCTGATTGGAGCCCGTGGTGCCGGC
GTGGCCACCATGAACCCACTGGCCATGCTTCAAAATCCCACACAGCTACT
GCAATCCCCGGCAGCAGCCGCTGCCGCCCAGCAGGCCGCCCTCATATCAC
AGAACCCATTTCAAGTACAAAACGCCGCTGCGGCAGCCTCGATTGCCAAT
CAGGCTGGCTTCGGCAAGCTGTTGACCACATATCCGCAGACTGCGCTGCA
TAGCGTCAGATATGCACCCTACTCGATCCCCGCCAGCGCCGCCACTGCCA
ACGCCGCCTTGATGCAGGCTCATCAGGCGCAAAGCGTGGCCGCCGCTGCC
CATCATCACCAGCAGCAGCAACAGCAGCAGCATCATCACCAGCAGCAGAC
CCACAATGCCCATGTGGCCGCCGCCCAGCAGCAGCAGCAGAGCCACCACA
ACGCCGTCTCGAATCCCGCTTCGCAGGCGCACTCGGCAGCAGCGGCTGCC
GCCCTGGCGGCCAATGCCGCGAATGGGGCAGGTGCCGCTGGAGCCCACAG
CCTGGCCGCTGCCGCTCAGCAAGCTGGCTTAATGGCCGGCAATCCCCTGA
ATGCCGCTGCTGCCGCCGCCGCCGCTGCTGCCAATCCGGCGGCTGCCTAC
TCCAACTATGCGCTGGCCAACGTGGACATGTCCAGCTTCCAGGGCGTCGA
TTGGAGCACCATGTACGGCATGGGCATGTACGTCTAAAAGCTTTCTAGAC
CAT

BS08412.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
msi-RA 1821 CG5099-PA 1..1821 17..1837 9105 100 Plus
msi-RD 1818 CG5099-PD 106..1818 125..1837 8565 100 Plus
msi-RF 1905 CG5099-PF 194..1905 126..1837 8560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
msi-RA 3984 CG5099-RA 490..2310 17..1837 9105 100 Plus
msi-RD 2801 CG5099-RD 700..2412 125..1837 8565 100 Plus
msi-RF 10175 CG5099-RF 788..2499 126..1837 8560 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25599504..25600210 653..1359 3535 100 Plus
3R 32079331 3R 25594964..25595602 17..655 3195 100 Plus
3R 32079331 3R 25600268..25600747 1358..1837 2400 100 Plus
Blast to na_te.dros performed 2014-11-28 01:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6868 1440..1552 215 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6890 1440..1593 190 62.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2427 1451..1552 188 66 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6827 1451..1552 179 65 Plus
roo 9092 roo DM_ROO 9092bp 1053..1160 1442..1558 178 68.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2451 1451..1552 167 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2499 1414..1558 163 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6824..6956 1451..1580 162 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2772..2869 1451..1548 157 62.2 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 641..734 1538..1445 154 65.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2529 1440..1555 132 61.2 Plus

BS08412.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:34 Download gff for BS08412.complete
Subject Subject Range Query Range Percent Splice Strand
msi-RA 452..2270 17..1835 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:16 Download gff for BS08412.complete
Subject Subject Range Query Range Percent Splice Strand
msi-RA 490..2308 17..1835 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:03 Download gff for BS08412.complete
Subject Subject Range Query Range Percent Splice Strand
msi-RA 490..2308 17..1835 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:03 Download gff for BS08412.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25594964..25595602 17..655 100 -> Plus
3R 25599507..25600210 656..1359 100 -> Plus
3R 25600270..25600745 1360..1835 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:16 Download gff for BS08412.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21420686..21421324 17..655 100 -> Plus
arm_3R 21425229..21425932 656..1359 100 -> Plus
arm_3R 21425992..21426467 1360..1835 100   Plus

BS08412.pep Sequence

Translation from 16 to 1836

> BS08412.pep
MHALQEGATVLHHQQPPPPTSGEDHLLTADSFFYARSNPMENAAAAAAAA
AAGLIDPHHNRDLHQALVASIANNSVAAIGGGLTTAAVLKSAAQQSQQAV
QQNQNAVVVTPGLEQPKQEPAQQAALALLKENVNASAGAGQNNGQAAMGG
SNKSGSSGRSTPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGT
VTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHA
TPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQT
KRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQL
LQKRIMLGTLGVQLPTAPGQLIGARGAGVATMNPLAMLQNPTQLLQSPAA
AAAAQQAALISQNPFQVQNAAAAASIANQAGFGKLLTTYPQTALHSVRYA
PYSIPASAATANAALMQAHQAQSVAAAAHHHQQQQQQQHHHQQQTHNAHV
AAAQQQQQSHHNAVSNPASQAHSAAAAAALAANAANGAGAAGAHSLAAAA
QQAGLMAGNPLNAAAAAAAAAANPAAAYSNYALANVDMSSFQGVDWSTMY
GMGMYV*

BS08412.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
msi-PA 606 CG5099-PA 1..606 1..606 3078 100 Plus
msi-PD 605 CG5099-PD 36..605 37..606 2881 100 Plus
msi-PF 634 CG5099-PF 66..634 38..606 2877 100 Plus
msi-PE 618 CG5099-PE 50..618 38..606 2877 100 Plus
msi-PC 634 CG5099-PC 66..634 38..606 2877 100 Plus