Clone Sequence Records
BS08414.3prime Sequence
857 bp (812 high quality bases) assembled on 2006-01-10
> BS08414.3prime
ATGGTCTAGAAAGCTTCTAGAAGAGCAGGGAGAAGAGGCTCCTCACGCCA
GTGGAGCCAGCTCCGGAACCGAGGGTAAAGCCCGTACTGGGCGTGCCACT
GCTGCGATGCCGCGAGGTGTGGCTGGAAACGTTAGCACGGACACGGTCGT
AGCTGGCAACATCCTCTTTGTCGGCATTGGCCAGCACCGATCGCATCGAG
TTGGCCACCGGCCACTTCTTCTTCATCACCAGATTGTTGGGTGGATCATG
TGCGGTACCAGCATCGACGGACCAAATGGTTACACTAGCACCGCCGAGTA
CCTTCGATCCGCGCGAGAACTTGAAGGCCAGTTCCTCGTCGCCGGCAATG
CGGGTTAGCTGCCAGCCAGTCAGATTGATCTCCTCGGTTCCCTTGTTGTG
CAGCTTGATGAAGCGTCCCTCAACGTCCGCCTCGATGATCTCCAGATCTC
CCTTGGCGGCGGCATTCACCGAGTACTCGGACAGAGTGCGATCCTCGCTC
TCATCGATCACGGTGCGGCGACGCTTCACGGCGCTGGATCCAGAGATGCC
AGGTGTAGCCGAGCGACGGCCACTGGGCGTGACCCTGCCGGATCGGGAAC
TGGCACTGGCGGTCAAGTGGCTGCCATTGCTGGAGATACCGGAGTCGGTA
GTCGGGCGTCCGGGCGACTCGATGTTCAGGCGACGCTCCTCACCGCACAG
CAGTTTGTCGTAAGCGGCAATTTCGAGATCCAACGACACCTTGATGTCCA
TCAGACCCTGGTACTCCTGCAGCTGGTGAGCCATCTCGTCGCGCATACGC
TGTAGTTCGGCTTCAAGGAGGCGATGTACTGGTTGTGGCGCTGGCGCTCC
GTGTCCA
BS08414.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10119-PA | 1866 | LamC-RA | 1069..1866 | 814..17 | 3990 | 100 | Minus |
| CG10119-PA | 1866 | LamC-RA | 1025..1068 | 857..814 | 220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LamC-RA | 2367 | CG10119-RA | 1171..2012 | 857..17 | 4185 | 99.9 | Minus |
| LamC-RB | 2450 | CG10119-RB | 1171..1866 | 857..163 | 3455 | 99.9 | Minus |
| LamC-RB | 2450 | CG10119-RB | 1949..2095 | 163..17 | 735 | 100 | Minus |
| Lam-RD | 3191 | CG6944-RD | 1300..1424 | 795..671 | 250 | 81 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14571459..14572154 | 163..857 | 3430 | 99.9 | Plus |
| 2R | 25286936 | 2R | 14571165..14571313 | 17..165 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:00:47 has no hits.
BS08414.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:39:57 Download gff for
BS08414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-PA | 1026..1866 | 17..856 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:53 Download gff for
BS08414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10119-PA | 1026..1866 | 17..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:02:26 Download gff for
BS08414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 1172..2014 | 13..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:55 Download gff for
BS08414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 1172..2014 | 13..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:55 Download gff for
BS08414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14571163..14571311 | 13..163 | 98 | <- | Plus |
| 2R | 14571460..14572153 | 164..856 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:02:26 Download gff for
BS08414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10458668..10458816 | 13..163 | 98 | <- | Plus |
| arm_2R | 10458965..10459658 | 164..856 | 99 | | Plus |
BS08414.5prime Sequence
841 bp (774 high quality bases) assembled on 2006-01-10
> BS08414.5prime
GAAGTTATCAGTCGACATGTCAGCACGCCGCGTCACATTGAACACACGCG
TTTCGCGCGCCTCCACCTCCACGCCGGTGGGCGGGGCATCCACCTCGTCA
AGGGTGGGCGCCACCTCACCCACCTCGCCCACGCGCACCAGCCGGCAGCA
GGAGAAGGAGGAACTGCAGCATTTGAACGATCGCCTGGCCTGCTACATCG
ATCGCATGCGCAACCTGGAGAACGAGAACAGCCGGCTCACCCAGGAACTG
AATCTCGCCCAGGATACCGTCAACAGGGAGACCTCTAATCTGAAGGCGGT
CTATGAGAAGGAGCTGGCCGCCGCTCGCAAGCTGCTCGATGAGACCGCCA
AAGAGAAGGCCAAGCTTGAGATCGATATCAAGCGTCTGTGGGAGGAGAAC
GACGACTTGAAGCCCAGACTCGACAAAAAGACGAAGGAGGCTACCGTGGC
AGAGAACAATGCCCGCCTGTATGAGAACCGCTACAACGAGGTGAATGGCA
AGTACAACCAATCGTTGGCCGATCGCAAGAAGTTCGAGGATCAGGCCAAG
GAGCTCGCTCTGGAGAACGAACGCCTGCGCCGCCAACTGGATGATCTTCG
CAAGCAGCTGGAGGCGGAGACGCTGGCCCGCGTCGATCTGGAGAACCAGA
ACCAGAGCCTGCGCGAGGAGCTGGCCTTCAAGGATCAGGTGCACACCCAG
GAGCTCACCGAGACCCGATCCCGTCGCCAGATCGAGATCAGCGAGATCGA
TGGCCGACTGTCGCGTCAATACGAGGCCAAGCTGCAGCAATCGCTCCAGG
AACTGCGTGATCAGTACGAGGGTCAAATGCGCATCAATCGC
BS08414.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10119-PA | 1866 | LamC-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
| CG6944-PA | 1869 | Lam-RA | 376..410 | 368..402 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LamC-RB | 2450 | CG10119-RB | 147..971 | 17..841 | 4125 | 100 | Plus |
| LamC-RA | 2367 | CG10119-RA | 147..971 | 17..841 | 4125 | 100 | Plus |
| Lam-RD | 3191 | CG6944-RD | 348..437 | 152..241 | 210 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14572424..14572849 | 841..416 | 2130 | 100 | Minus |
| 2R | 25286936 | 2R | 14575225..14575625 | 417..17 | 2005 | 100 | Minus |
| 2L | 23513712 | 2L | 5543491..5543580 | 152..241 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:48:11 has no hits.
BS08414.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:39:58 Download gff for
BS08414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-PA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:55 Download gff for
BS08414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10119-PA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:50:17 Download gff for
BS08414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 147..971 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:36:53 Download gff for
BS08414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 147..971 | 17..841 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:36:53 Download gff for
BS08414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14572424..14572847 | 418..841 | 100 | <- | Minus |
| 2R | 14575225..14575625 | 17..417 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:50:17 Download gff for
BS08414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10459929..10460352 | 418..841 | 100 | <- | Minus |
| arm_2R | 10462730..10463130 | 17..417 | 100 | | Minus |
BS08414.complete Sequence
1898 bp assembled on 2008-08-14
GenBank Submission: FJ636146
> BS08414.complete
GAAGTTATCAGTCGACATGTCAGCACGCCGCGTCACATTGAACACACGCG
TTTCGCGCGCCTCCACCTCCACGCCGGTGGGCGGGGCATCCACCTCGTCA
AGGGTGGGCGCCACCTCACCCACCTCGCCCACGCGCACCAGCCGGCAGCA
GGAGAAGGAGGAACTGCAGCATTTGAACGATCGCCTGGCCTGCTACATCG
ATCGCATGCGCAACCTGGAGAACGAGAACAGCCGGCTCACCCAGGAACTG
AATCTCGCCCAGGATACCGTCAACAGGGAGACCTCTAATCTGAAGGCGGT
CTATGAGAAGGAGCTGGCCGCCGCTCGCAAGCTGCTCGATGAGACCGCCA
AAGAGAAGGCCAAGCTTGAGATCGATATCAAGCGTCTGTGGGAGGAGAAC
GACGACTTGAAGCCCAGACTCGACAAAAAGACGAAGGAGGCTACCGTGGC
AGAGAACAATGCCCGCCTGTATGAGAACCGCTACAACGAGGTGAATGGCA
AGTACAACCAATCGTTGGCCGATCGCAAGAAGTTCGAGGATCAGGCCAAG
GAGCTCGCTCTGGAGAACGAACGCCTGCGCCGCCAACTGGATGATCTTCG
CAAGCAGCTGGAGGCGGAGACGCTGGCCCGCGTCGATCTGGAGAACCAGA
ACCAGAGCCTGCGCGAGGAGCTGGCCTTCAAGGATCAGGTGCACACCCAG
GAGCTCACCGAGACCCGATCCCGTCGCCAGATCGAGATCAGCGAGATCGA
TGGCCGACTGTCGCGTCAATACGAGGCCAAGCTGCAGCAATCGCTCCAGG
AACTGCGTGATCAGTACGAGGGTCAAATGCGCATCAATCGCGAGGAGATC
GAGCTGCTGTACGACAATGAGATCCAGAACCTCAAGGCTGCTGCCAATAG
GGCTGCCCAGGGATCCGCTCTTGCCACCGAGGAAGTCCGTCTCATGCGCA
CCAAGATCGATGGCTTGAACGCCAAGCTACAGAATCTGGAGGACACCAAT
GCTGGCTTGAATGCTCGCATTCGGGAGCTGGAGAACCTCTTGGACACGGA
GCGCCAGCGCCACAACCAGTACATCGCCTCCTTGGAAGCCGAACTACAGC
GTATGCGCGACGAGATGGCTCACCAGCTGCAGGAGTACCAGGGTCTGATG
GACATCAAGGTGTCGTTGGATCTCGAAATTGCCGCTTACGACAAACTGCT
GTGCGGTGAGGAGCGTCGCCTGAACATCGAGTCGCCCGGACGCCCGACTA
CCGACTCCGGTATCTCCAGCAATGGCAGCCACTTGACCGCCAGTGCCAGT
TCCCGATCCGGCAGGGTCACGCCCAGTGGCCGTCGCTCGGCTACACCTGG
CATCTCTGGATCCAGCGCCGTGAAGCGTCGCCGCACCGTGATCGATGAGA
GCGAGGATCGCACTCTGTCCGAGTACTCGGTGAATGCCGCCGCCAAGGGA
GATCTGGAGATCATCGAGGCGGACGTTGAGGGACGCTTCATCAAGCTGCA
CAACAAGGGAACCGAGGAGATCAATCTGACTGGCTGGCAGCTAACCCGCA
TTGCCGGCGACGAGGAACTGGCCTTCAAGTTCTCGCGCGGATCGAAGGTA
CTCGGCGGTGCTAGTGTAACCATTTGGTCCGTCGATGCTGGTACCGCACA
TGATCCACCCAACAATCTGGTGATGAAGAAGAAGTGGCCGGTGGCCAACT
CGATGCGATCGGTGCTGGCCAATGCCGACAAAGAGGATGTTGCCAGCTAC
GACCGTGTCCGTGCTAACGTTTCCAGCCACACCTCGCGGCATCGCAGCAG
TGGCACGCCCAGTACGGGCTTTACCCTCGGTTCCGGAGCTGGCTCCACTG
GCGTGAGGAGCCTCTTCTCCCTGCTCTTCTAGAAGCTTTCTAGACCAT
BS08414.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LamC-RA | 1866 | CG10119-PA | 1..1866 | 17..1882 | 9330 | 100 | Plus |
| LamC-RB | 1923 | CG10119-PB | 1..1720 | 17..1736 | 8600 | 100 | Plus |
| LamC-RB | 1923 | CG10119-PB | 1803..1923 | 1736..1856 | 605 | 100 | Plus |
| Lam-RD | 1869 | CG6944-PD | 1112..1236 | 1104..1228 | 250 | 80 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LamC-RA | 2367 | CG10119-RA | 147..2012 | 17..1882 | 9330 | 100 | Plus |
| LamC-RB | 2450 | CG10119-RB | 147..1866 | 17..1736 | 8600 | 100 | Plus |
| LamC-RB | 2450 | CG10119-RB | 1949..2095 | 1736..1882 | 735 | 100 | Plus |
| Lam-RD | 3191 | CG6944-RD | 1300..1424 | 1104..1228 | 250 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:20:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14571459..14572182 | 1736..1013 | 3620 | 100 | Minus |
| 2R | 25286936 | 2R | 14572252..14572849 | 1013..416 | 2990 | 100 | Minus |
| 2R | 25286936 | 2R | 14575225..14575625 | 417..17 | 2005 | 100 | Minus |
| 2R | 25286936 | 2R | 14571165..14571313 | 1882..1734 | 745 | 100 | Minus |
| 2L | 23513712 | 2L | 5543491..5543580 | 152..241 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:20:35 has no hits.
BS08414.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:52 Download gff for
BS08414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 178..2045 | 17..1886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:32:20 Download gff for
BS08414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 147..2012 | 17..1882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:54:03 Download gff for
BS08414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 178..2043 | 17..1882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:15 Download gff for
BS08414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 147..2012 | 17..1882 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:15 Download gff for
BS08414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14571165..14571311 | 1736..1882 | 100 | <- | Minus |
| 2R | 14571460..14572182 | 1013..1735 | 100 | <- | Minus |
| 2R | 14572253..14572847 | 418..1012 | 100 | <- | Minus |
| 2R | 14575225..14575625 | 17..417 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:32:20 Download gff for
BS08414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10458670..10458816 | 1736..1882 | 100 | <- | Minus |
| arm_2R | 10458965..10459687 | 1013..1735 | 100 | <- | Minus |
| arm_2R | 10459758..10460352 | 418..1012 | 100 | <- | Minus |
| arm_2R | 10462730..10463130 | 17..417 | 100 | | Minus |
BS08414.pep Sequence
Translation from 16 to 1881
> BS08414.pep
MSARRVTLNTRVSRASTSTPVGGASTSSRVGATSPTSPTRTSRQQEKEEL
QHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKEL
AAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNAR
LYENRYNEVNGKYNQSLADRKKFEDQAKELALENERLRRQLDDLRKQLEA
ETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSR
QYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGS
ALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELENLLDTERQRHN
QYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEER
RLNIESPGRPTTDSGISSNGSHLTASASSRSGRVTPSGRRSATPGISGSS
AVKRRRTVIDESEDRTLSEYSVNAAAKGDLEIIEADVEGRFIKLHNKGTE
EINLTGWQLTRIAGDEELAFKFSRGSKVLGGASVTIWSVDAGTAHDPPNN
LVMKKKWPVANSMRSVLANADKEDVASYDRVRANVSSHTSRHRSSGTPST
GFTLGSGAGSTGVRSLFSLLF*
BS08414.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:44:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LamC-PA | 621 | CG10119-PA | 1..621 | 1..621 | 3098 | 100 | Plus |
| LamC-PB | 640 | CG10119-PB | 1..573 | 1..573 | 2858 | 100 | Plus |
| Lam-PD | 622 | CG6944-PD | 17..591 | 9..595 | 1527 | 53.9 | Plus |
| Lam-PC | 622 | CG6944-PC | 17..591 | 9..595 | 1527 | 53.9 | Plus |
| Lam-PB | 622 | CG6944-PB | 17..591 | 9..595 | 1527 | 53.9 | Plus |
