Clone Sequence Records
BS08415.3prime Sequence
855 bp (805 high quality bases) assembled on 2006-01-10
> BS08415.3prime
ATGGTCTAGAAAGCTTCTATGTAGATTTCTGTGTGGTGGTGAGCTGCTCC
CCTGGAGCCAAGCAGTTGAAGGTCCGGACAAAAACAGGCAGCCTTGTCAG
GGAATTTATGGGTGAACCGCCCTCGACGAAATCGCTGCCGAAATACAGGG
TTTGGCCGAAGGAACTCTGGCCAAATCTGAAGAAGAACAATTCCCTCAGA
GACATGGTGGTGAAGTTGGGCTGCCTCTGGCTGAACTTGGAACCTTCTGC
GAAGTAGGCTTCGTGGACCAAATGGAGCACGACGAGGTACTGGTCGCGTT
GGCTAAGCAAATTATCTTGGGTCCATGCGCTTACACACTCATCGCCGGCG
GTAGTAATTTGGTTATCGTCGAACAATTGGAGCATATTGACCTTATGATG
TTTGCAATTAAAAAGATCGAAACTTTTTAACATCTCAAGGCCAAAGCGAA
TGCCCAAGGGTGTCACTTTGAAGATATCGTGGCTGTCGGGATCAAATGAA
GCATCTGCCAGAAAGTCGTATGCCACATAAATCGTATTTCCATTTTCCTC
ATACGCAGTTTCGAAGAAGAAATTCGAAATGGGATATGAATGGAGCATGT
ATCGCCGGTCTTTGAAGTTCGGTTGGTCCAGTAAGCTTAGTTCGGCACGC
GTTCGGTGCTCCAGAACCTTTAGGTGAGCAGTCGCAAGTTCCTCGTCGTC
CGCAAATTCAAGCTCCTTGTAGTATCGGGTTACGAAACGTCGATGGCCCG
CCTTTCCCGGCAGATTGCCGATGCTCAGGCTCAGGCCATTCAACTTCTTC
TGCAGTAAGGAAATCTCAGCGGGCGGCAGCTTAAGAACGTTCCTTTCGAG
CCGGA
BS08415.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31918-PA | 1890 | CG31918-RA | 1052..1890 | 855..17 | 4195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31918-RA | 2267 | CG31918-RA | 1164..2002 | 855..17 | 4195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5056247..5057085 | 17..855 | 4195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:16:59 has no hits.
BS08415.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:39:59 Download gff for
BS08415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31918-PA | 1053..1890 | 17..854 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:56 Download gff for
BS08415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31918-PA | 1053..1890 | 17..854 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:22:09 Download gff for
BS08415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31918-RA | 1165..2005 | 10..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:29:25 Download gff for
BS08415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31918-RA | 1165..2005 | 10..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:29:25 Download gff for
BS08415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5056244..5057084 | 10..854 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:22:09 Download gff for
BS08415.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5056244..5057084 | 10..854 | 99 | | Plus |
BS08415.5prime Sequence
941 bp (919 high quality bases) assembled on 2006-01-10
> BS08415.5prime
GAAGTTATCAGTCGACATGATGGAATCCAGATCGTACCTCAGCCTAAGCT
GGCTGCTTCTTCTTCTGTGCAGTACAGTATGTTCTGCAAATCCCAATCTC
GAGATCATGAAGCGAATGCTAGACGACATGGATGAAAAAGTCGAACCATG
TCACAATTTCTACAACTCCTCCCAAAAGAATCTCAAGTGGCATGCATTTG
CGACGGTGAGCGATCAGTTCCAACTCCTCTTCGACGGAATTGAGAACGAG
GTGTTCGAGAAGCACAGCTTCGAGGAAAAGTTGCAGCGTCTATACAAAAT
CTGTTCGACCATGGAGAGACCCAGTCTTCTGAGGTATTTTGAGCTGGTGA
AGCCGGGAGAAGATCTCAACTGGCCCTTTCTGACGCCCCGAGGAGGCAAG
TGGCCCAAGGAGAAGTTTCAGTGGATGGAGGCACTGGCTCGACTGCGTCG
GTACGGCTTCAATGACATCATGTTTGGAATGAGTATAAGACAGGATCCGA
ACAGTGACAGTGGCCAACCCATAGTAGTTTTTGAAAAAAAGTACGATTCT
CTATTCCGTTTCATAGAGTCGCTGCAAAATATTGGTCTGCCACCAAAATT
GGCAAAGGAGATAGCGCCTCTGGATAATGCCATACAAGAAATGTACAAAT
CAGATATGAAATTTGAACACTATGCACGAGATGCAGCACCAGTGAAACGG
ATTAGTCTAGGGCAGTTGGAAATTTATGGGGTGTCCCTAACCAAGTATCT
GGAGATCGTCTTCGGACGCCCCTTTTCGCCGGATTTTGTAGTGCATGTGG
AGAATCTGTACTACTTACGGGGGCTCCAGAATTTGATGACTGCCGTTCCG
AGCCAGGTGGTGGCCATTATCTAACGGCACGCTTCAGCTTCTATATAATG
TTCACGTTCATGAAGCATGGAGATTCATGCGTGACTACAAT
BS08415.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31918-PA | 1890 | CG31918-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
| CG31918-PA | 1890 | CG31918-RA | 851..926 | 866..941 | 380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:59:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31918-RA | 2267 | CG31918-RA | 113..1038 | 17..941 | 4605 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:59:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5057211..5058136 | 941..17 | 4580 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:59:54 has no hits.
BS08415.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:00 Download gff for
BS08415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31918-PA | 1..926 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:38:58 Download gff for
BS08415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31918-PA | 1..926 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:33 Download gff for
BS08415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31918-RA | 98..1038 | 3..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:21 Download gff for
BS08415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31918-RA | 98..1038 | 3..941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:21 Download gff for
BS08415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5057211..5058151 | 3..941 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:33 Download gff for
BS08415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5057211..5058151 | 3..941 | 99 | | Minus |
BS08415.complete Sequence
1922 bp assembled on 2008-08-14
GenBank Submission: FJ636147
> BS08415.complete
GAAGTTATCAGTCGACATGATGGAATCCAGATCGTACCTCAGCCTAAGCT
GGCTGCTTCTTCTTCTGTGCAGTACAGTATGTTCTGCAAATCCCAATCTC
GAGATCATGAAGCGAATGCTAGACGACATGGATGAAAAAGTCGAACCATG
TCACAATTTCTACAACTCCTCCCAAAAGAATCTCAAGTGGCATGCATTTG
CGACGGTGAGCGATCAGTTCCAACTCCTCTTCGACGGAATTGAGAACGAG
GTGTTCGAGAAGCACAGCTTCGAGGAAAAGTTGCAGCGTCTATACAAAAT
CTGTTCGACCATGGAGAGACCCAGTCTTCTGAGGTATTTTGAGCTGGTGA
AGCCGGGAGAAGATCTCAACTGGCCCTTTCTGACGCCCCGAGGAGGCAAG
TGGCCCAAGGAGAAGTTTCAGTGGATGGAGGCACTGGCTCGACTGCGTCG
GTACGGCTTCAATGACATCATGTTTGGAATGAGTATAAGACAGGATCCGA
ACAGTGACAGTGGCCAACCCATAGTAGTTTTTGAAAAAAAGTACGATTCT
CTATTCCGTTTCATAGAGTCGCTGCAAAATATTGGTCTGCCACCAAAATT
GGCAAAGGAGATAGCGCCTCTGGATAATGCCATACAAGAAATGTACAAAT
CAGATATGAAATTTGAACACTATGCACGAGATGCAGCACCAGTGAAACGG
ATTAGTCTAGGGCAGTTGGAAATTTATGGGGTGTCCCTAACCAAGTATCT
GGAGATCGTCTTCGGACGCCCCTTTTCGCCGGATTTTGTAGTGCATGTGG
AGAATCTGTACTACTTACGGGGGCTCCAGAATTTGATGACTGCCGTTCCG
AGCCAGGTGGTGGCCAATTATCTAACGGCACGCTTCAGCTTCTATATAAT
GTTCACGTTCATGAAGCATGGAGATTCATGCGTGACTACAATGCGCCAAT
CCATGGAATTCGCCAGCAATCTGCTGTTCGAGGAGCGAATTCTGGGACGC
AAGAAGCTGCGTAGCTATCAAAACCAGGCCGGCAAGATATTTGATGCCAT
ACGCCAGCAGCTAAACATCCGGCTCGAAAGGAACGTTCTTAAGCTGCCGC
CCGCTGAGATTTCCTTACTGCAGAAGAAGTTGAATGGCCTGAGCCTGAGC
ATCGGCAATCTGCCGGGAAAGGCGGGCCATCGACGTTTCGTAACCCGATA
CTACAAGGAGCTTGAATTTGCGGACGACGAGGAACTTGCGACTGCTCACC
TAAAGGTTCTGGAGCACCGAACGCGTGCCGAACTAAGCTTACTGGACCAA
CCGAACTTCAAAGACCGGCGATACATGCTCCATTCATATCCCATTTCGAA
TTTCTTCTTCGAAACTGCGTATGAGGAAAATGGAAATACGATTTATGTGG
CATACGACTTTCTGGCAGATGCTTCATTTGATCCCGACAGCCACGATATC
TTCAAAGTGACACCCTTGGGCATTCGCTTTGGCCTTGAGATGTTAAAAAG
TTTCGATCTTTTTAATTGCAAACATCATAAGGTCAATATGCTCCAATTGT
TCGACGATAACCAAATTACTACCGCCGGCGATGAGTGTGTAAGCGCATGG
ACCCAAGATAATTTGCTTAGCCAACGCGACCAGTACCTCGTCGTGCTCCA
TTTGGTCCACGAAGCCTACTTCGCAGAAGGTTCCAAGTTCAGCCAGAGGC
AGCCCAACTTCACCACCATGTCTCTGAGGGAATTGTTCTTCTTCAGATTT
GGCCAGAGTTCCTTCGGCCAAACCCTGTATTTCGGCAGCGATTTCGTCGA
GGGCGGTTCACCCATAAATTCCCTGACAAGGCTGCCTGTTTTTGTCCGGA
CCTTCAACTGCTTGGCTCCAGGGGAGCAGCTCACCACCACACAGAAATCT
ACATAGAAGCTTTCTAGACCAT
BS08415.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:23:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31918-RA | 1890 | CG31918-PA | 1..1890 | 17..1906 | 9450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31918-RA | 2267 | CG31918-RA | 113..2002 | 17..1906 | 9450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5056247..5058136 | 1906..17 | 9450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:23:39 has no hits.
BS08415.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:45:57 Download gff for
BS08415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31918-RA | 91..1998 | 3..1913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:33 Download gff for
BS08415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31918-RA | 113..2002 | 17..1906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:28 Download gff for
BS08415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31918-RA | 106..1995 | 17..1906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:57 Download gff for
BS08415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31918-RA | 113..2002 | 17..1906 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:57 Download gff for
BS08415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5056247..5058136 | 17..1906 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:33 Download gff for
BS08415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5056247..5058136 | 17..1906 | 100 | | Minus |
BS08415.pep Sequence
Translation from 16 to 1905
> BS08415.pep
MMESRSYLSLSWLLLLLCSTVCSANPNLEIMKRMLDDMDEKVEPCHNFYN
SSQKNLKWHAFATVSDQFQLLFDGIENEVFEKHSFEEKLQRLYKICSTME
RPSLLRYFELVKPGEDLNWPFLTPRGGKWPKEKFQWMEALARLRRYGFND
IMFGMSIRQDPNSDSGQPIVVFEKKYDSLFRFIESLQNIGLPPKLAKEIA
PLDNAIQEMYKSDMKFEHYARDAAPVKRISLGQLEIYGVSLTKYLEIVFG
RPFSPDFVVHVENLYYLRGLQNLMTAVPSQVVANYLTARFSFYIMFTFMK
HGDSCVTTMRQSMEFASNLLFEERILGRKKLRSYQNQAGKIFDAIRQQLN
IRLERNVLKLPPAEISLLQKKLNGLSLSIGNLPGKAGHRRFVTRYYKELE
FADDEELATAHLKVLEHRTRAELSLLDQPNFKDRRYMLHSYPISNFFFET
AYEENGNTIYVAYDFLADASFDPDSHDIFKVTPLGIRFGLEMLKSFDLFN
CKHHKVNMLQLFDDNQITTAGDECVSAWTQDNLLSQRDQYLVVLHLVHEA
YFAEGSKFSQRQPNFTTMSLRELFFFRFGQSSFGQTLYFGSDFVEGGSPI
NSLTRLPVFVRTFNCLAPGEQLTTTQKST*
BS08415.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31918-PA | 629 | CG31918-PA | 1..629 | 1..629 | 3294 | 100 | Plus |
| CG42370-PA | 655 | CG9508-PA | 23..615 | 24..601 | 567 | 28.5 | Plus |
| CG4580-PA | 619 | CG4580-PA | 2..578 | 12..586 | 457 | 23.7 | Plus |
| CG9507-PA | 684 | CG9507-PA | 7..631 | 10..586 | 250 | 21.2 | Plus |
| CG9505-PA | 652 | CG9505-PA | 38..637 | 22..615 | 202 | 19.8 | Plus |
