Clone Sequence Records
BS08417.3prime Sequence
877 bp (835 high quality bases) assembled on 2006-01-10
> BS08417.3prime
ATGGTCTAGAAAGCTTTTAGTGCTCTTGCAGACTAAGCTTTAACGCCTGC
TCGATCATCTCCTGCTCCTGCTGCCGCTCCAGTTCGAACTTTCTCTGCTC
TTGCTGTGACAGTCGCATGGCCATGGCCAAATCGGGATCCACATACCGGA
AGCCACCATCGTCGTCTTCGTCGGAGGCGGGCGAACCGCTTTGGAGATTT
GCATGGGCGCCAAGCAGCGATTCCTGCAGGACTCGTTGCAGCTGCTCGTC
ATCTTCTGGCAGGAGATCGGAGCCCACGACGTTTTGGCCTCTCAACACTT
CCCAGATATCCACCTTGTCGTCGTCCCGAGCGTCCACGCCACAGGCTCCG
CTTGTTTCCACCAAACTCTGCTCAATTGCATACTGTAGCATGTCATCCTC
GTCAAGAGGAATTTGCCGACGGACATCGCTGCCCCTGTTTGTGTAGTGAG
CTGGGATATCGAAGCAGCGATCATCGACCAAACAAGTGACACGATCTTGC
TCCTGCAGCGTGGCCACGTGATCAACGGGCGTGGTTAAAGCAAATACGTT
TCCAAATGTAATACAGGCATTTAAAACATGGAAGAGCGGGATTTCCACTT
TGACTGGAAAACCAGCAGGCAGCTGCATGGTGATAAAGTCTCTCAGCTTG
GACACATGTGGACTGGCCATGGTGGACATGAGATCCAAAATGGGAAGCAC
CTGTTCCTGCAGTCGAATGGGATGCTCCTCGGCTAACCATAAGTTGGCTC
TAAAGCGCTGCACCTTTGTGCTCAGGTTCTTGGGACCGCCAACATCCCTT
CCGTGAAGATCAAACTCCTGAGTAAAATACTCCTCCGGAGTAACAGAAGA
CTTTGGAGTACTGGTGCCCGACGCACC
BS08417.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-PC | 1914 | CG15118-RC | 1054..1914 | 877..17 | 4255 | 99.7 | Minus |
| CG15118-PA | 1914 | CG15118-RA | 1054..1914 | 877..17 | 4255 | 99.7 | Minus |
| CG15118-PB | 1914 | CG15118-RB | 1054..1914 | 877..17 | 4255 | 99.7 | Minus |
| CG15118-PD | 1779 | CG15118-RD | 919..1779 | 877..17 | 4255 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-RD | 2345 | CG15118-RD | 997..1857 | 877..17 | 4275 | 99.8 | Minus |
| CG15118-RB | 2528 | CG15118-RB | 1180..2040 | 877..17 | 4275 | 99.8 | Minus |
| CG15118-RA | 2475 | CG15118-RA | 1127..1987 | 877..17 | 4275 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19134883..19135526 | 234..877 | 3205 | 99.8 | Plus |
| 2R | 25286936 | 2R | 19134215..19134432 | 17..234 | 1075 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:01:42 has no hits.
BS08417.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:04 Download gff for
BS08417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-PA | 1054..1914 | 17..877 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:02 Download gff for
BS08417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-PD | 919..1779 | 17..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:02:30 Download gff for
BS08417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 1127..1996 | 9..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:15:58 Download gff for
BS08417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 1127..1996 | 9..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:15:58 Download gff for
BS08417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19134206..19134431 | 9..233 | 97 | <- | Plus |
| 2R | 19134883..19135526 | 234..877 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:02:30 Download gff for
BS08417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15021711..15021936 | 9..233 | 97 | <- | Plus |
| arm_2R | 15022388..15023031 | 234..877 | 99 | | Plus |
BS08417.5prime Sequence
950 bp (806 high quality bases) assembled on 2006-01-10
> BS08417.5prime
GAAGTTATCAGTCGACATGAGGAGCGTCGAGGAGATCAAAGCGGAGTACC
CGCTGCACTGGCACATCTGGCACAACGAACTGGAGCAGCTGCAGGCGGCC
ATCGACCAGAACGATAAGGAGAAAATCGATCCCCGCGGCCGGACGCCACT
GATGCTGGCTGTGAGATTGGCCAATTTGCCATGCGTTAAATGCCTTCTGG
CGGCCAAATGCAATGCGACCTATGAGTACGAAGGCTGGTCGATTGTCCAG
GAAGCGGTCTGCACCGGCGATGTGGACATACTGACGGCCATCATCGAAGT
CCGGGATCTCCAGCGTCATGTCCAGCGGGTTACGCATGTGCCTAAGCTGC
TGCAGCACCTATTGGACGCACCAGATTTCTACATCGAGATGAAGTGGGAA
TTCACCTCCTGGGTGCCTCTGATGTCGCGTCTCTGTCCCAGCGACACCTA
CAAGGTCTACAAGCGGGGAGCCAACGTCCGGATAGATACCACCCTGCTGG
GCTTCGACAACAACACCTGGCAACGGGGCAATCGCTCTTACATCTTCAAG
GGGGCCAAAGAAACTGCCACGATGATCGAGATCGATCACGATACAAACGA
AGTAATGGTGGAGGAGATGAGCAGCGATATCGGTGATATTGTGGCCATTC
CACCAGCCTTGGGCACCGTGAGGGCGCGCCTCAATGCCCCGGTGATCACG
AACAACATCGAGATGGACAAGATTAGCTTCGAGCGCAACAAGTGCGGCAT
ATGGNGATGGCGTAGCGAGAAATCTGAGATGATCAACGGCTACAACTGCA
AGGTGTATGGGGCCAGCAACGTGGAGTTTGTTACAAAGACGCGAATGGAT
CACCTTAGCGAGGAGCAAATTAAGACAAGACAGCGAGGACTCCACTGCAT
AGCCTGCTGGGAATTGCTGATGANGATNATGTGTCACCCGCTGATGCTGC
BS08417.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-PC | 1914 | CG15118-RC | 1..859 | 17..875 | 4276 | 99.8 | Plus |
| CG15118-PA | 1914 | CG15118-RA | 1..859 | 17..875 | 4276 | 99.8 | Plus |
| CG15118-PB | 1914 | CG15118-RB | 1..859 | 17..875 | 4276 | 99.8 | Plus |
| CG15118-PD | 1779 | CG15118-RD | 1..724 | 152..875 | 3601 | 99.8 | Plus |
| CG15118-PC | 1914 | CG15118-RC | 860..935 | 875..950 | 342 | 97.3 | Plus |
| CG15118-PA | 1914 | CG15118-RA | 860..935 | 875..950 | 342 | 97.3 | Plus |
| CG15118-PB | 1914 | CG15118-RB | 860..935 | 875..950 | 342 | 97.3 | Plus |
| CG15118-PD | 1779 | CG15118-RD | 725..800 | 875..950 | 342 | 97.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-RE | 2823 | CG15118-RE | 127..1061 | 17..950 | 4617 | 99.6 | Plus |
| CG15118-RB | 2528 | CG15118-RB | 127..1061 | 17..950 | 4617 | 99.6 | Plus |
| CG15118-RA | 2475 | CG15118-RA | 74..1008 | 17..950 | 4617 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:41:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19136323..19136637 | 557..243 | 1575 | 100 | Minus |
| 2R | 25286936 | 2R | 19135939..19136255 | 874..558 | 1574 | 99.7 | Minus |
| 2R | 25286936 | 2R | 19136695..19136830 | 242..107 | 680 | 100 | Minus |
| 2R | 25286936 | 2R | 19136951..19137043 | 109..17 | 465 | 100 | Minus |
| 2R | 25286936 | 2R | 19135704..19135779 | 950..875 | 358 | 97.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:41:25 has no hits.
BS08417.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:05 Download gff for
BS08417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-PA | 1..935 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:03 Download gff for
BS08417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-PB | 1..935 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:20:07 Download gff for
BS08417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 65..1008 | 9..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:38 Download gff for
BS08417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 65..1008 | 9..950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:38 Download gff for
BS08417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19136323..19136637 | 243..557 | 100 | <- | Minus |
| 2R | 19135704..19135780 | 875..950 | 96 | <- | Minus |
| 2R | 19135939..19136255 | 558..874 | 99 | <- | Minus |
| 2R | 19136695..19136827 | 110..242 | 100 | <- | Minus |
| 2R | 19136951..19137047 | 9..109 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:20:07 Download gff for
BS08417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15023209..15023285 | 875..950 | 96 | <- | Minus |
| arm_2R | 15023444..15023760 | 558..874 | 99 | <- | Minus |
| arm_2R | 15023828..15024142 | 243..557 | 100 | <- | Minus |
| arm_2R | 15024200..15024332 | 110..242 | 100 | <- | Minus |
| arm_2R | 15024456..15024552 | 9..109 | 96 | | Minus |
BS08417.complete Sequence
1946 bp assembled on 2008-08-14
GenBank Submission: FJ636148
> BS08417.complete
GAAGTTATCAGTCGACATGAGGAGCGTCGAGGAGATCAAAGCGGAGTACC
CGCTGCACTGGCACATCTGGCACAACGAACTGGAGCAGCTGCAGGCGGCC
ATCGACCAGAACGATAAGGAGAAAATCGATCCCCGCGGCCGGACGCCACT
GATGCTGGCTGTGAGATTGGCCAATTTGCCATGCGTTAAATGCCTTCTGG
CGGCCAAATGCAATGCGACCTATGAGTACGAAGGCTGGTCGATTGTCCAG
GAAGCGGTCTGCACCGGCGATGTGGACATACTGACGGCCATCATCGAAGT
CCGGGATCTCCAGCGTCATGTCCAGCGGGTTACGCATGTGCCTAAGCTGC
TGCAGCACCTATTGGACGCACCAGATTTCTACATCGAGATGAAGTGGGAA
TTCACCTCCTGGGTGCCTCTGATGTCGCGTCTCTGTCCCAGCGACACCTA
CAAGGTCTACAAGCGGGGAGCCAACGTCCGGATAGATACCACCCTGCTGG
GCTTCGACAACAACACCTGGCAACGGGGCAATCGCTCTTACATCTTCAAG
GGGGCCAAAGAAACTGCCACGATGATCGAGATCGATCACGATACAAACGA
AGTAATGGTGGAGGAGATGAGCAGCGATATCGGTGATATTGTGGCCATTC
CACCAGCCTTGGGCACCGTGAGGGCGCGCCTCAATGCCCCGGTGATCACG
AACAACATCGAGATGGACAAGATTAGCTTCGAGCGCAACAAGTGCGGCAT
ATGGGGATGGCGTAGCGAGAAATCTGAGATGATCAACGGCTACAACTGCA
AGGTGTATGGGGCCAGCAACGTGGAGTTTGTTACAAAGACGCGAATGGAT
CACCTTAGCGAGGAGCAAATTAAGAACAAGACAGCGAGGACTCCACTGCA
TAGCCTGCTGGGAATTGCTGATGAGGATTATGTGTCACCCGCTGATGCTG
CTGCGGCACTAAAAGATCGTACACCATCGCCCCGGTTGGAGGAAGCTTCC
AACGCTGGAGTTGAAAATGGTGGCCGAAACTCACCAGCCCCTGGAAATCA
AAGCAACGGAAGCTCCGCGGGTGCGTCGGGCACCAGTACTCCAAAGTCTT
CTGTTACTCCGGAGGAGTATTTTACTCAGGAGTTTGATCTTCACGGAAGG
GATGTTGGCGGTCCCAAGAACCTGAGCACAAAGGTGCAGCGCTTTAGAGC
CAACTTATGGTTAGCCGAGGAGCATCCCATTCGACTGCAGGAACAGGTGC
TTCCCATTTTGGATCTCATGTCCACCATGGCCAGTCCACATGTGTCCAAG
CTGAGAGACTTTATCACCATGCAGCTGCCTGCTGGTTTTCCAGTCAAAGT
GGAAATCCCGCTCTTCCATGTTTTAAATGCCTGTATTACATTTGGAAACG
TATTTGCTTTAACCACGCCCGTTGATCACGTGGCCACGCTGCAGGAGCAA
GATCGTGTCACTTGTTTGGTCGATGATCGCTGCTTCGATATCCCAGCTCA
CTACACAAACAGGGGCAGCGATGTCCGTCGGCAAATTCCTCTTGACGAGG
ATGACATGCTACAGTATGCAATTGAGCAGAGTTTGGTGGAAACAAGCGGA
GCCTGTGGCGTGGACGCTCGGGACGACGACAAGGTGGATATCTGGGAAGT
GTTGAGAGGCCAAAACGTCGTGGGCTCCGATCTCCTGCCAGAAGATGACG
AGCAGCTGCAACGAGTCCTGCAGGAATCGCTGCTTGGCGCCCATGCAAAT
CTCCAAAGCGGTTCGCCCGCCTCCGACGAAGACGACGATGGTGGCTTCCG
GTATGTGGATCCCGATTTGGCCATGGCCATGCGACTGTCACAGCAAGAGC
AGAGAAAGTTCGAACTGGAGCGGCAGCAGGAGCAGGAGATGATCGAGCAG
GCGTTAAAGCTTAGTCTGCAAGAGCACTAAAAGCTTTCTAGACCAT
BS08417.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-RB | 1914 | CG15118-PB | 1..1914 | 17..1930 | 9540 | 99.9 | Plus |
| CG15118-RA | 1914 | CG15118-PA | 1..1914 | 17..1930 | 9540 | 99.9 | Plus |
| CG15118-RD | 1779 | CG15118-PD | 1..1779 | 152..1930 | 8865 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-RB | 2528 | CG15118-RB | 127..2040 | 17..1930 | 9540 | 99.9 | Plus |
| CG15118-RA | 2475 | CG15118-RA | 74..1987 | 17..1930 | 9540 | 99.9 | Plus |
| CG15118-RD | 2345 | CG15118-RD | 34..1857 | 107..1930 | 9090 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19134883..19135625 | 1713..971 | 3700 | 99.9 | Minus |
| 2R | 25286936 | 2R | 19135939..19136255 | 874..558 | 1585 | 100 | Minus |
| 2R | 25286936 | 2R | 19136323..19136637 | 557..243 | 1575 | 100 | Minus |
| 2R | 25286936 | 2R | 19134215..19134432 | 1930..1713 | 1075 | 99.5 | Minus |
| 2R | 25286936 | 2R | 19136695..19136830 | 242..107 | 680 | 100 | Minus |
| 2R | 25286936 | 2R | 19135685..19135786 | 970..869 | 495 | 99 | Minus |
| 2R | 25286936 | 2R | 19136951..19137043 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:47:50 has no hits.
BS08417.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:44:50 Download gff for
BS08417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 73..2004 | 9..1938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:42 Download gff for
BS08417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 74..1985 | 17..1928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:31 Download gff for
BS08417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 82..1993 | 17..1928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:40 Download gff for
BS08417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 74..1985 | 17..1928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:40 Download gff for
BS08417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19134217..19134431 | 1714..1928 | 99 | <- | Minus |
| 2R | 19134883..19135625 | 971..1713 | 99 | <- | Minus |
| 2R | 19135685..19135780 | 875..970 | 100 | <- | Minus |
| 2R | 19135939..19136255 | 558..874 | 100 | <- | Minus |
| 2R | 19136323..19136637 | 243..557 | 100 | <- | Minus |
| 2R | 19136695..19136827 | 110..242 | 100 | <- | Minus |
| 2R | 19136951..19137043 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:42 Download gff for
BS08417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15021722..15021936 | 1714..1928 | 99 | <- | Minus |
| arm_2R | 15022388..15023130 | 971..1713 | 99 | <- | Minus |
| arm_2R | 15023190..15023285 | 875..970 | 100 | <- | Minus |
| arm_2R | 15023444..15023760 | 558..874 | 100 | <- | Minus |
| arm_2R | 15023828..15024142 | 243..557 | 100 | <- | Minus |
| arm_2R | 15024200..15024332 | 110..242 | 100 | <- | Minus |
| arm_2R | 15024456..15024548 | 17..109 | 100 | | Minus |
BS08417.pep Sequence
Translation from 16 to 1929
> BS08417.pep
MRSVEEIKAEYPLHWHIWHNELEQLQAAIDQNDKEKIDPRGRTPLMLAVR
LANLPCVKCLLAAKCNATYEYEGWSIVQEAVCTGDVDILTAIIEVRDLQR
HVQRVTHVPKLLQHLLDAPDFYIEMKWEFTSWVPLMSRLCPSDTYKVYKR
GANVRIDTTLLGFDNNTWQRGNRSYIFKGAKETATMIEIDHDTNEVMVEE
MSSDIGDIVAIPPALGTVRARLNAPVITNNIEMDKISFERNKCGIWGWRS
EKSEMINGYNCKVYGASNVEFVTKTRMDHLSEEQIKNKTARTPLHSLLGI
ADEDYVSPADAAAALKDRTPSPRLEEASNAGVENGGRNSPAPGNQSNGSS
AGASGTSTPKSSVTPEEYFTQEFDLHGRDVGGPKNLSTKVQRFRANLWLA
EEHPIRLQEQVLPILDLMSTMASPHVSKLRDFITMQLPAGFPVKVEIPLF
HVLNACITFGNVFALTTPVDHVATLQEQDRVTCLVDDRCFDIPAHYTNRG
SDVRRQIPLDEDDMLQYAIEQSLVETSGACGVDARDDDKVDIWEVLRGQN
VVGSDLLPEDDEQLQRVLQESLLGAHANLQSGSPASDEDDDGGFRYVDPD
LAMAMRLSQQEQRKFELERQQEQEMIEQALKLSLQEH*
BS08417.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-PB | 637 | CG15118-PB | 1..637 | 1..637 | 3337 | 100 | Plus |
| CG15118-PA | 637 | CG15118-PA | 1..637 | 1..637 | 3337 | 100 | Plus |
| CG15118-PD | 592 | CG15118-PD | 1..592 | 46..637 | 3090 | 100 | Plus |
| CG15118-PE | 630 | CG15118-PE | 1..578 | 1..576 | 2984 | 98.6 | Plus |
| CG5742-PB | 543 | CG5742-PB | 84..539 | 10..505 | 495 | 27.1 | Plus |
