Clone Sequence Records
BS08419.3prime Sequence
917 bp (822 high quality bases) assembled on 2006-01-10
> BS08419.3prime
ATGGTCTAGAAAGCTTTTAGTAAACGGGTCCGCTGAATCCCTCTGTGCCA
GAGATTATCCGCAGTTGATCGTTGAAGCTCTGCGCGGGCGGAATCTGATT
CTTCTTAGAATCCTTTTCCATTGAACGGGATCGCAGATGCGGCTTATTCT
TAACGCAACTGAGTGGAGTTCGCTTTTGTGCGGACAGGGGGGTACTGTTT
GTCTTGGGCGTAATGGATCCTCCGGTCACCGGGGACCCCTCCTCTTGGTC
AACATAGATCTTTGGCTTGTTGGCTCTGGCGGGCTTGCGCGGTGGCACAC
GACGCTTGTGACCCAAACGCACTCGCTCCAAATGTTTGTTCGACGGCACT
TCTGGTAGCTGCTCCTCGCCAGCGACAAAGGAGGCCATGCTGCTGCCAGT
GCTGAGATTCAGGGTCAGTGTTTCCAGGATGTGCTCCAGCATCTGGGCCT
CGCGTGCCTCCTCCTCCTCGTCGTCGCAGAAGATGATGGGTGTGCGATCG
ACGCCCAGGCTGGGCGATCGGGGATCACCATGGGGCTGCTGTTCTGGCGG
GGGCGTGGCCATTTTCACCTGGCCCTGCTCCAGATTCGGCTCCTGATACG
GCAGCAGCTGTTGCTCGCAAGGCAAGGTTTCTTCCTGATCATAGGGCAGT
GAAACAATCTCCAGGGAAATATTGTTGTGTGCAGCAGACGGCGGTGTGCC
GAAGCTATCGCAGCTCTCCTCTAAATCCACTTGGGGCGGTGATGCAGGCA
CTGCTCTCTGTGCTGTACCCACCCTGGTGTCCACGAAGAGATCGGCGAAT
GTGTCATCCATATTAAGCGAACGAACCTCATCGAGGACCAGTGGAGTGCG
ATTCAGCTGAGGAGAGCGAGGATCGTTCAGGGAGAAGCCCTTGAGCAAAC
GTTTTCGCAGCATGGAG
BS08419.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10364-PA | 1146 | msb1l-RA | 246..1146 | 917..17 | 4505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msb1l-RA | 1366 | CG10364-RA | 343..1243 | 917..17 | 4505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:21:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19578108..19579008 | 917..17 | 4505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 07:21:50 has no hits.
BS08419.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:08 Download gff for
BS08419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-PA | 246..1146 | 17..917 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:08 Download gff for
BS08419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10364-PA | 246..1146 | 17..917 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:13:43 Download gff for
BS08419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 343..1256 | 6..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:43:17 Download gff for
BS08419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 343..1256 | 6..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:43:17 Download gff for
BS08419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19578108..19579021 | 6..917 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:13:43 Download gff for
BS08419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19578108..19579021 | 6..917 | 99 | | Minus |
BS08419.5prime Sequence
900 bp (843 high quality bases) assembled on 2006-01-10
> BS08419.5prime
GAAGTTATCAGTCGACATGGGAGCAAAGGCAACAAAAATGGAAGGTGAAT
ATCTGCCGGATACGCCGACACTAAACAAAATGCGCCTGGCCAGCGAAAAG
CGAGAACAAATGGAAATGACGACGCCGAATCGAGAGCAAAACAACGCTTT
GCTCGATCCTCGATCACCAAATGGCTGCCGCACGCCTTTAACCTTCTTGC
AGGCGTCAAAACCTCGCGTTGAGGAGGAGGAGCAGCATGTGACCACCAGT
GAAAATGCCTTCTCCATGCTGCGAAAACGTTTGCTCAAGGGCTTCTCCCT
GAACGATCCTCGCTCTCCTCAGCTGAATCGCACTCCACTGGTCCTCGATG
AGGTTCGTTCGCTTAATATGGATGACACATTCGCCGATCTCTTCGTGGAC
ACCAGGGTGGGTACAGCACAGAGAGCAGTGCCTGCATCACCGCCCCAAGT
GGATTTAGAGGAGAGCTGCGATAGCTTCGGCACACCGCCGTCTGCTGCAC
ACAACAATATTTCCCTGGAGATTGTTTCACTGCCCTATGATCAGGAAGAA
ACCTTGCCTTGCGAGCAACAGCTGCTGCCGTATCAGGAGCCGAATCTGGA
GCAGGGCCAGGTGAAAATGGCCACGCCCCCGCCAGAACAGCAGCCCCATG
GTGATCCCCGATCGCCCAGCCTGGGCGTCGATCGCACACCCATCATCTTC
TGCGACGACGAGGAGGAGGAGGCACGCGAGGCCCAGATGCTGGAGCACAT
CCTGGAAACACTGACCCTGAATCTCAGCACTGGCAGCAGCATGGCCTCCT
TTGTCGCTGGCGAGGAGCAGCTACCAGAAGTGCCGTCGAACAAACATTTG
GAGCGAGTGCGTTTGGGTCACAAGCGTCGTGTGCCACCGCGCAAGCCCCG
BS08419.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:06:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10364-PA | 1146 | msb1l-RA | 1..882 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:57:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msb1l-RA | 1366 | CG10364-RA | 98..979 | 17..898 | 4410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19578040..19578744 | 194..898 | 3525 | 100 | Plus |
| 2L | 23513712 | 2L | 19577798..19577974 | 17..193 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:57:28 has no hits.
BS08419.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:40:09 Download gff for
BS08419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-PA | 1..883 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:39:09 Download gff for
BS08419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10364-PA | 1..883 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:27:19 Download gff for
BS08419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 98..980 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:43 Download gff for
BS08419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 98..980 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:43 Download gff for
BS08419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19577800..19577974 | 19..193 | 100 | -> | Plus |
| 2L | 19578040..19578745 | 194..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:27:19 Download gff for
BS08419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19577800..19577974 | 19..193 | 100 | -> | Plus |
| arm_2L | 19578040..19578745 | 194..900 | 99 | | Plus |
BS08419.complete Sequence
1178 bp (1178 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ636149
> BS08419.complete
GAAGTTATCAGTCGACATGGGAGCAAAGGCAACAAAAATGGAAGGTGAAT
ATCTGCCGGATACGCCGACACTAAACAAAATGCGCCTGGCCAGCGAAAAG
CGAGAACAAATGGAAATGACGACGCCGAATCGAGAGCAAAACAACGCTTT
GCTCGATCCTCGATCACCAAATGGCTGCCGCACGCCTTTAACCTTCTTGC
AGGCGTCAAAACCTCGCGTTGAGGAGGAGGAGCAGCATGTGACCACCAGT
GAAAATGCCTTCTCCATGCTGCGAAAACGTTTGCTCAAGGGCTTCTCCCT
GAACGATCCTCGCTCTCCTCAGCTGAATCGCACTCCACTGGTCCTCGATG
AGGTTCGTTCGCTTAATATGGATGACACATTCGCCGATCTCTTCGTGGAC
ACCAGGGTGGGTACAGCACAGAGAGCAGTGCCTGCATCACCGCCCCAAGT
GGATTTAGAGGAGAGCTGCGATAGCTTCGGCACACCGCCGTCTGCTGCAC
ACAACAATATTTCCCTGGAGATTGTTTCACTGCCCTATGATCAGGAAGAA
ACCTTGCCTTGCGAGCAACAGCTGCTGCCGTATCAGGAGCCGAATCTGGA
GCAGGGCCAGGTGAAAATGGCCACGCCCCCGCCAGAACAGCAGCCCCATG
GTGATCCCCGATCGCCCAGCCTGGGCGTCGATCGCACACCCATCATCTTC
TGCGACGACGAGGAGGAGGAGGCACGCGAGGCCCAGATGCTGGAGCACAT
CCTGGAAACACTGACCCTGAATCTCAGCACTGGCAGCAGCATGGCCTCCT
TTGTCGCTGGCGAGGAGCAGCTACCAGAAGTGCCGTCGAACAAACATTTG
GAGCGAGTGCGTTTGGGTCACAAGCGTCGTGTGCCACCGCGCAAGCCCGC
CAGAGCCAACAAGCCAAAGATCTATGTTGACCAAGAGGAGGGGTCCCCGG
TGACCGGAGGATCCATTACGCCCAAGACAAACAGTACCCCCCTGTCCGCA
CAAAAGCGAACTCCACTCAGTTGCGTTAAGAATAAGCCGCATCTGCGATC
CCGTTCAATGGAAAAGGATTCTAAGAAGAATCAGATTCCGCCCGCGCAGA
GCTTCAACGATCAACTGCGGATAATCTCTGGCACAGAGGGATTCAGCGGA
CCCGTTTACTAAAAGCTTTCTAGACCAT
BS08419.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msb1l-RA | 1146 | CG10364-PA | 1..1146 | 17..1162 | 5730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:47:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msb1l-RA | 1366 | CG10364-RA | 98..1243 | 17..1162 | 5730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:47:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19578040..19579008 | 194..1162 | 4845 | 100 | Plus |
| 2L | 23513712 | 2L | 19577798..19577974 | 17..193 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:47:26 has no hits.
BS08419.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:03:29 Download gff for
BS08419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 1..1146 | 17..1162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:41:29 Download gff for
BS08419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 94..1252 | 17..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:57 Download gff for
BS08419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 98..1241 | 17..1160 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:03:29 Download gff for
BS08419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 94..1252 | 17..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:13 Download gff for
BS08419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 98..1241 | 17..1160 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:13 Download gff for
BS08419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19577798..19577974 | 17..193 | 100 | -> | Plus |
| 2L | 19578040..19579006 | 194..1160 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:57 Download gff for
BS08419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19577798..19577974 | 17..193 | 100 | -> | Plus |
| arm_2L | 19578040..19579006 | 194..1160 | 100 | | Plus |
BS08419.pep Sequence
Translation from 16 to 1161
> BS08419.pep
MGAKATKMEGEYLPDTPTLNKMRLASEKREQMEMTTPNREQNNALLDPRS
PNGCRTPLTFLQASKPRVEEEEQHVTTSENAFSMLRKRLLKGFSLNDPRS
PQLNRTPLVLDEVRSLNMDDTFADLFVDTRVGTAQRAVPASPPQVDLEES
CDSFGTPPSAAHNNISLEIVSLPYDQEETLPCEQQLLPYQEPNLEQGQVK
MATPPPEQQPHGDPRSPSLGVDRTPIIFCDDEEEEAREAQMLEHILETLT
LNLSTGSSMASFVAGEEQLPEVPSNKHLERVRLGHKRRVPPRKPARANKP
KIYVDQEEGSPVTGGSITPKTNSTPLSAQKRTPLSCVKNKPHLRSRSMEK
DSKKNQIPPAQSFNDQLRIISGTEGFSGPVY*
BS08419.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msb1l-PA | 381 | CG10364-PA | 1..381 | 1..381 | 1983 | 100 | Plus |
